RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 FER1L4A9Z1Z3 1794 aa8.93□□□□□ -0.98
TM9SF4-202ENST00000398022 PCF11O94913 1555 aaKnown RBP8.92□□□□□ -0.98
TM9SF4-202ENST00000398022 CFAP74Q9C0B2 1584 aa8.92□□□□□ -0.98
TM9SF4-202ENST00000398022 NBR1Q14596 966 aa8.92□□□□□ -0.98
TM9SF4-202ENST00000398022 WWC1Q8IX03 1113 aa8.92□□□□□ -0.98
TM9SF4-202ENST00000398022 FTSJ3Q8IY81 847 aaKnown RBP8.92□□□□□ -0.98
TM9SF4-202ENST00000398022 CDC42BPBQ9Y5S2 1711 aa8.92□□□□□ -0.98
TM9SF4-202ENST00000398022 ILDR1Q86SU0 546 aaPredicted RBP8.92□□□□□ -0.98
TM9SF4-202ENST00000398022 CWC22Q9HCG8 908 aaKnown RBP8.92□□□□□ -0.98
TM9SF4-202ENST00000398022 RNF216Q9NWF9 866 aaPredicted RBP8.92□□□□□ -0.98
TM9SF4-202ENST00000398022 PTPRMP28827 1452 aa8.92□□□□□ -0.98
TM9SF4-202ENST00000398022 KDM5CP41229 1560 aa8.91□□□□□ -0.98
TM9SF4-202ENST00000398022 NEO1Q92859 1461 aa8.91□□□□□ -0.98
TM9SF4-202ENST00000398022 ARID4BQ4LE39 1312 aaPredicted RBP8.91□□□□□ -0.98
TM9SF4-202ENST00000398022 REREQ9P2R6 1566 aa8.91□□□□□ -0.98
TM9SF4-202ENST00000398022 CC2D2BQ6DHV5 1058 aa8.91□□□□□ -0.98
TM9SF4-202ENST00000398022 ZNF692Q9BU19 519 aaPredicted RBP8.9□□□□□ -0.98
TM9SF4-202ENST00000398022 ARHGEF12Q9NZN5 1544 aa8.9□□□□□ -0.98
TM9SF4-202ENST00000398022 PREX1Q8TCU6 1659 aa8.9□□□□□ -0.98
TM9SF4-202ENST00000398022 CD109Q6YHK3 1445 aa8.89□□□□□ -0.99
TM9SF4-202ENST00000398022 RRBP1Q9P2E9 1410 aaKnown RBP8.89□□□□□ -0.99
TM9SF4-202ENST00000398022 CCNB3Q8WWL7 1395 aa8.89□□□□□ -0.99
TM9SF4-202ENST00000398022 GRIPAP1Q4V328 841 aa8.89□□□□□ -0.99
TM9SF4-202ENST00000398022 BBXQ8WY36 941 aaPredicted RBP8.89□□□□□ -0.99
TM9SF4-202ENST00000398022 SETQ01105 290 aaPredicted RBP8.88□□□□□ -0.99
TM9SF4-202ENST00000398022 ZNF526Q8TF50 670 aaPredicted RBP8.88□□□□□ -0.99
TM9SF4-202ENST00000398022 KANK4Q5T7N3 995 aaPredicted RBP8.88□□□□□ -0.99
TM9SF4-202ENST00000398022 PRDM16Q9HAZ2 1276 aa8.88□□□□□ -0.99
TM9SF4-202ENST00000398022 MYO5CQ9NQX4 1742 aa8.88□□□□□ -0.99
TM9SF4-202ENST00000398022 KIF14Q15058 1648 aa8.87□□□□□ -0.99
TM9SF4-202ENST00000398022 HECW1Q76N89 1606 aa8.87□□□□□ -0.99
TM9SF4-202ENST00000398022 PTMAP06454 111 aaKnown RBP8.87□□□□□ -0.99
TM9SF4-202ENST00000398022 TSHZ2Q9NRE2 1034 aa8.87□□□□□ -0.99
TM9SF4-202ENST00000398022 ITGAEP38570 1179 aa8.87□□□□□ -0.99
TM9SF4-202ENST00000398022 C3P01024 1663 aa8.87□□□□□ -0.99
TM9SF4-202ENST00000398022 FHOD3Q2V2M9 1422 aa8.87□□□□□ -0.99
TM9SF4-202ENST00000398022 ITSN2Q9NZM3 1697 aa8.86□□□□□ -0.99
TM9SF4-202ENST00000398022 MCCP23508 829 aa8.86□□□□□ -0.99
TM9SF4-202ENST00000398022 ABCA6Q8N139 1617 aa8.86□□□□□ -0.99
TM9SF4-202ENST00000398022 CDC42BPAQ5VT25 1732 aa8.85□□□□□ -0.99
TM9SF4-202ENST00000398022 NEFMP07197 916 aa8.85□□□□□ -0.99
TM9SF4-202ENST00000398022 EFCAB5A4FU69 1503 aa8.84□□□□□ -0.99
TM9SF4-202ENST00000398022 RTL5Q5HYW3 569 aaPredicted RBP8.84□□□□□ -0.99
TM9SF4-202ENST00000398022 SUPT16HQ9Y5B9 1047 aaKnown RBP8.84□□□□□ -0.99
TM9SF4-202ENST00000398022 PREX2Q70Z35 1606 aa8.84□□□□□ -0.99
TM9SF4-202ENST00000398022 ZNF142P52746 1687 aaPredicted RBP8.84□□□□□ -0.99
TM9SF4-202ENST00000398022 MROH2AA6NES4 1674 aa8.83□□□□□ -1
TM9SF4-202ENST00000398022 CANXP27824 592 aaKnown RBP8.83□□□□□ -1
TM9SF4-202ENST00000398022 KIDINS220Q9ULH0 1771 aa8.83□□□□□ -1
TM9SF4-202ENST00000398022 DIP2CQ9Y2E4 1556 aa8.83□□□□□ -1
TM9SF4-202ENST00000398022 PHLDB1Q86UU1 1377 aa8.82□□□□□ -1
TM9SF4-202ENST00000398022 CNGB1Q14028 1251 aaPredicted RBP8.82□□□□□ -1
TM9SF4-202ENST00000398022 KCNG1Q9UIX4 513 aa8.82□□□□□ -1
TM9SF4-202ENST00000398022 ARHGAP35Q9NRY4 1499 aa8.81□□□□□ -1
TM9SF4-202ENST00000398022 PLXNC1O60486 1568 aa8.81□□□□□ -1
TM9SF4-202ENST00000398022 GTF2E1P29083 439 aaPredicted RBP8.81□□□□□ -1
TM9SF4-202ENST00000398022 RAD21O60216 631 aa8.8□□□□□ -1
TM9SF4-202ENST00000398022 FAM177A1Q8N128 213 aaPredicted RBP8.8□□□□□ -1
TM9SF4-202ENST00000398022 ZNF428Q96B54 188 aa8.8□□□□□ -1
TM9SF4-202ENST00000398022 RAB3GAP2Q9H2M9 1393 aa8.8□□□□□ -1
TM9SF4-202ENST00000398022 LTBP4Q8N2S1 1624 aa8.8□□□□□ -1
TM9SF4-202ENST00000398022 FAM43BQ6ZT52 329 aaPredicted RBP8.8□□□□□ -1
TM9SF4-202ENST00000398022 ZFYVE16Q7Z3T8 1539 aa8.8□□□□□ -1
TM9SF4-202ENST00000398022 ANAPC15P60006 121 aa8.8□□□□□ -1
TM9SF4-202ENST00000398022 SETD5Q9C0A6 1442 aa8.79□□□□□ -1
TM9SF4-202ENST00000398022 PPM1GO15355 546 aaPredicted RBP8.79□□□□□ -1
TM9SF4-202ENST00000398022 MAP3K1Q13233 1512 aa8.79□□□□□ -1
TM9SF4-202ENST00000398022 CDK13Q14004 1512 aaKnown RBP8.79□□□□□ -1
TM9SF4-202ENST00000398022 MAGI2Q86UL8 1455 aa8.79□□□□□ -1
TM9SF4-202ENST00000398022 FAM50AQ14320 339 aaKnown RBP8.79□□□□□ -1
TM9SF4-202ENST00000398022 USP35Q9P2H5 1018 aa8.79□□□□□ -1
TM9SF4-202ENST00000398022 YEATS2Q9ULM3 1422 aa8.78□□□□□ -1
TM9SF4-202ENST00000398022 FAM193AP78312 1265 aa8.78□□□□□ -1
TM9SF4-202ENST00000398022 POGZQ7Z3K3 1410 aa8.78□□□□□ -1
TM9SF4-202ENST00000398022 KCTD17Q8N5Z5 321 aa8.78□□□□□ -1
TM9SF4-202ENST00000398022 DNAJC2Q99543 621 aaKnown RBP8.77□□□□□ -1.01
TM9SF4-202ENST00000398022 ABCC1P33527 1531 aa8.77□□□□□ -1.01
TM9SF4-202ENST00000398022 RBM25P49756 843 aaKnown RBP8.77□□□□□ -1.01
TM9SF4-202ENST00000398022 CCDC27Q2M243 656 aa8.77□□□□□ -1.01
TM9SF4-202ENST00000398022 INO80Q9ULG1 1556 aaPredicted RBP8.76□□□□□ -1.01
TM9SF4-202ENST00000398022 ALKQ9UM73 1620 aa8.76□□□□□ -1.01
TM9SF4-202ENST00000398022 GPATCH11Q8N954 259 aa8.76□□□□□ -1.01
TM9SF4-202ENST00000398022 TIAM1Q13009 1591 aa8.76□□□□□ -1.01
TM9SF4-202ENST00000398022 ATP1B4Q9UN42 357 aaPredicted RBP8.76□□□□□ -1.01
TM9SF4-202ENST00000398022 MAFGO15525 162 aa8.76□□□□□ -1.01
TM9SF4-202ENST00000398022 FANCAO15360 1455 aa8.75□□□□□ -1.01
TM9SF4-202ENST00000398022 ADGBQ8N7X0 1667 aa8.75□□□□□ -1.01
TM9SF4-202ENST00000398022 AGLP35573 1532 aa8.75□□□□□ -1.01
TM9SF4-202ENST00000398022 AKNAQ7Z591 1439 aa8.75□□□□□ -1.01
TM9SF4-202ENST00000398022 DDX10Q13206 875 aaKnown RBP8.74□□□□□ -1.01
TM9SF4-202ENST00000398022 LRRC9Q6ZRR7 1453 aa8.74□□□□□ -1.01
TM9SF4-202ENST00000398022 ANP32CO43423 234 aa8.74□□□□□ -1.01
TM9SF4-202ENST00000398022 OS9Q13438 667 aaPredicted RBP8.74□□□□□ -1.01
TM9SF4-202ENST00000398022 STAC3Q96MF2 364 aa8.74□□□□□ -1.01
TM9SF4-202ENST00000398022 SAMD9LQ8IVG5 1584 aa8.73□□□□□ -1.01
TM9SF4-202ENST00000398022 RGS22Q8NE09 1264 aa8.73□□□□□ -1.01
TM9SF4-202ENST00000398022 MTMR7Q9Y216 660 aa8.73□□□□□ -1.01
TM9SF4-202ENST00000398022 PLCH2O75038 1416 aa8.73□□□□□ -1.01
TM9SF4-202ENST00000398022 PATL2C9JE40 543 aaKnown RBP8.73□□□□□ -1.01
TM9SF4-202ENST00000398022 MYO3AQ8NEV4 1616 aa8.73□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms