RNA–Protein interactions for RNA: ENST00000395794.2

CXCL12-205, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 1,052 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-205ENST00000395794 PTPN23Q9H3S7 1636 aa21.3■■□□□ 1
CXCL12-205ENST00000395794 PTPRKQ15262 1439 aa21.29■■□□□ 1
CXCL12-205ENST00000395794 FAM135AQ9P2D6 1515 aa21.29■■□□□ 1
CXCL12-205ENST00000395794 KDM5DQ9BY66 1539 aa21.28■■□□□ 1
CXCL12-205ENST00000395794 ABCC5O15440 1437 aa21.27■■□□□ 1
CXCL12-205ENST00000395794 SHANK2Q9UPX8 1470 aa21.26■□□□□ 0.99
CXCL12-205ENST00000395794 RRP7BPQ9NSQ0 103 aa21.25■□□□□ 0.99
CXCL12-205ENST00000395794 TCOF1Q13428 1488 aaKnown RBP21.25■□□□□ 0.99
CXCL12-205ENST00000395794 DUOX2Q9NRD8 1548 aa21.24■□□□□ 0.99
CXCL12-205ENST00000395794 KIF15Q9NS87 1388 aa21.24■□□□□ 0.99
CXCL12-205ENST00000395794 DAPK1P53355 1430 aa21.24■□□□□ 0.99
CXCL12-205ENST00000395794 FBXO41Q8TF61 875 aa21.24■□□□□ 0.99
CXCL12-205ENST00000395794 FAM50AQ14320 339 aaKnown RBP21.23■□□□□ 0.99
CXCL12-205ENST00000395794 PZPP20742 1482 aa21.21■□□□□ 0.99
CXCL12-205ENST00000395794 FBXO31Q5XUX0 539 aaPredicted RBP21.21■□□□□ 0.99
CXCL12-205ENST00000395794 EIF2AK4Q9P2K8 1649 aaKnown RBP21.21■□□□□ 0.99
CXCL12-205ENST00000395794 TNRQ92752 1358 aa21.21■□□□□ 0.99
CXCL12-205ENST00000395794 ANKRD30AQ9BXX3 1397 aa21.21■□□□□ 0.99
CXCL12-205ENST00000395794 NCOA1Q15788 1441 aa21.21■□□□□ 0.99
CXCL12-205ENST00000395794 STRCQ7RTU9 1775 aa21.2■□□□□ 0.99
CXCL12-205ENST00000395794 DNMT1P26358 1616 aaKnown RBP21.2■□□□□ 0.98
CXCL12-205ENST00000395794 MYO3AQ8NEV4 1616 aa21.2■□□□□ 0.98
CXCL12-205ENST00000395794 CHIC2Q9UKJ5 165 aa21.2■□□□□ 0.98
CXCL12-205ENST00000395794 PTPRTO14522 1441 aa21.2■□□□□ 0.98
CXCL12-205ENST00000395794 CAMSAP1Q5T5Y3 1602 aa21.19■□□□□ 0.98
CXCL12-205ENST00000395794 CEP170BQ9Y4F5 1589 aaPredicted RBP21.19■□□□□ 0.98
CXCL12-205ENST00000395794 RNF17Q9BXT8 1623 aaKnown RBP21.18■□□□□ 0.98
CXCL12-205ENST00000395794 CROCC2H7BZ55 1655 aa21.18■□□□□ 0.98
CXCL12-205ENST00000395794 CERKQ8TCT0 537 aa21.18■□□□□ 0.98
CXCL12-205ENST00000395794 ERBINQ96RT1 1412 aa21.18■□□□□ 0.98
CXCL12-205ENST00000395794 PKD2Q13563 968 aa21.17■□□□□ 0.98
CXCL12-205ENST00000395794 A2ML1A8K2U0 1454 aa21.16■□□□□ 0.98
CXCL12-205ENST00000395794 ABCC3O15438 1527 aa21.15■□□□□ 0.98
CXCL12-205ENST00000395794 NCKAP5LQ9HCH0 1330 aa21.15■□□□□ 0.98
CXCL12-205ENST00000395794 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.15■□□□□ 0.98
CXCL12-205ENST00000395794 ZNF142P52746 1687 aaPredicted RBP21.15■□□□□ 0.98
CXCL12-205ENST00000395794 ZC3H13Q5T200 1668 aaKnown RBP21.14■□□□□ 0.97
CXCL12-205ENST00000395794 PLA2R1Q13018 1463 aa21.13■□□□□ 0.97
CXCL12-205ENST00000395794 KANK1Q14678 1352 aa21.13■□□□□ 0.97
CXCL12-205ENST00000395794 THEMISQ8N1K5 641 aaPredicted RBP21.11■□□□□ 0.97
CXCL12-205ENST00000395794 NLRP1Q9C000 1473 aa21.1■□□□□ 0.97
CXCL12-205ENST00000395794 ADRA2BP18089 450 aa21.1■□□□□ 0.97
CXCL12-205ENST00000395794 MROH1Q8NDA8 1641 aa21.09■□□□□ 0.97
CXCL12-205ENST00000395794 PPARGC1BQ86YN6 1023 aaKnown RBP21.08■□□□□ 0.97
CXCL12-205ENST00000395794 PRDM15P57071 1507 aaPredicted RBP21.07■□□□□ 0.96
CXCL12-205ENST00000395794 ADGRL2O95490 1459 aa21.07■□□□□ 0.96
CXCL12-205ENST00000395794 ANKLE2Q86XL3 938 aa21.06■□□□□ 0.96
CXCL12-205ENST00000395794 ERVK-7P63135 1459 aa21.05■□□□□ 0.96
CXCL12-205ENST00000395794 SPATA31D1Q6ZQQ2 1576 aa21.04■□□□□ 0.96
CXCL12-205ENST00000395794 UGGT1Q9NYU2 1555 aa21.04■□□□□ 0.96
CXCL12-205ENST00000395794 CEP152O94986 1710 aa21.04■□□□□ 0.96
CXCL12-205ENST00000395794 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.03■□□□□ 0.96
CXCL12-205ENST00000395794 ARHGAP31Q2M1Z3 1444 aa21.03■□□□□ 0.96
CXCL12-205ENST00000395794 ANKRD50Q9ULJ7 1429 aa21.02■□□□□ 0.96
CXCL12-205ENST00000395794 DEPDC5O75140 1603 aa21.01■□□□□ 0.95
CXCL12-205ENST00000395794 ITGAEP38570 1179 aa21.01■□□□□ 0.95
CXCL12-205ENST00000395794 ZNF335Q9H4Z2 1342 aaPredicted RBP20.98■□□□□ 0.95
CXCL12-205ENST00000395794 ROCK1Q13464 1354 aa20.97■□□□□ 0.95
CXCL12-205ENST00000395794 LTBP4Q8N2S1 1624 aa20.96■□□□□ 0.95
CXCL12-205ENST00000395794 LMTK2Q8IWU2 1503 aa20.96■□□□□ 0.95
CXCL12-205ENST00000395794 STAG3Q9UJ98 1225 aa20.96■□□□□ 0.95
CXCL12-205ENST00000395794 VWDEQ8N2E2 1590 aa20.93■□□□□ 0.94
CXCL12-205ENST00000395794 POLR1AO95602 1720 aaPredicted RBP20.93■□□□□ 0.94
CXCL12-205ENST00000395794 IQSEC2Q5JU85 1478 aa20.93■□□□□ 0.94
CXCL12-205ENST00000395794 NPHP4O75161 1426 aaPredicted RBP20.92■□□□□ 0.94
CXCL12-205ENST00000395794 CFAP65Q6ZU64 1925 aaKnown RBP20.91■□□□□ 0.94
CXCL12-205ENST00000395794 EID1Q9Y6B2 187 aa20.91■□□□□ 0.94
CXCL12-205ENST00000395794 NEURL4Q96JN8 1562 aa20.9■□□□□ 0.94
CXCL12-205ENST00000395794 EFCAB6Q5THR3 1501 aa20.89■□□□□ 0.94
CXCL12-205ENST00000395794 MED14O60244 1454 aa20.89■□□□□ 0.94
CXCL12-205ENST00000395794 TXNDC2Q86VQ3 553 aa20.89■□□□□ 0.93
CXCL12-205ENST00000395794 IDI1Q13907 227 aa20.88■□□□□ 0.93
CXCL12-205ENST00000395794 SLC52A1Q9NWF4 448 aa20.87■□□□□ 0.93
CXCL12-205ENST00000395794 RPRD2Q5VT52 1461 aaKnown RBP20.87■□□□□ 0.93
CXCL12-205ENST00000395794 UBR1Q8IWV7 1749 aa20.87■□□□□ 0.93
CXCL12-205ENST00000395794 SCAF11Q99590 1463 aaKnown RBP20.85■□□□□ 0.93
CXCL12-205ENST00000395794 NOS1P29475 1434 aa20.85■□□□□ 0.93
CXCL12-205ENST00000395794 UBAP1LF5GYI3 381 aa20.84■□□□□ 0.93
CXCL12-205ENST00000395794 CPS1P31327 1500 aa20.83■□□□□ 0.93
CXCL12-205ENST00000395794 RRBP1Q9P2E9 1410 aaKnown RBP20.83■□□□□ 0.93
CXCL12-205ENST00000395794 UNC13BO14795 1591 aa20.83■□□□□ 0.92
CXCL12-205ENST00000395794 NUP155O75694 1391 aa20.83■□□□□ 0.92
CXCL12-205ENST00000395794 TMEM2Q9UHN6 1383 aa20.83■□□□□ 0.92
CXCL12-205ENST00000395794 SLIT1O75093 1534 aa20.83■□□□□ 0.92
CXCL12-205ENST00000395794 IQGAP1P46940 1657 aa20.83■□□□□ 0.92
CXCL12-205ENST00000395794 PIK3C2BO00750 1634 aa20.82■□□□□ 0.92
CXCL12-205ENST00000395794 LTKP29376 864 aa20.82■□□□□ 0.92
CXCL12-205ENST00000395794 ARHGAP23Q9P227 1491 aa20.81■□□□□ 0.92
CXCL12-205ENST00000395794 TET3O43151 1660 aa20.81■□□□□ 0.92
CXCL12-205ENST00000395794 SYNMO15061 1565 aa20.8■□□□□ 0.92
CXCL12-205ENST00000395794 KDM5AP29375 1690 aaKnown RBP20.77■□□□□ 0.92
CXCL12-205ENST00000395794 HDGFP51858 240 aaKnown RBP20.77■□□□□ 0.92
CXCL12-205ENST00000395794 ADGRB3O60242 1522 aa20.76■□□□□ 0.91
CXCL12-205ENST00000395794 GCC2Q8IWJ2 1684 aa20.76■□□□□ 0.91
CXCL12-205ENST00000395794 TOM1O60784 492 aa20.75■□□□□ 0.91
CXCL12-205ENST00000395794 CHGAP10645 457 aaKnown RBP20.75■□□□□ 0.91
CXCL12-205ENST00000395794 BCANQ96GW7 911 aa20.75■□□□□ 0.91
CXCL12-205ENST00000395794 IQGAP3Q86VI3 1631 aa20.75■□□□□ 0.91
CXCL12-205ENST00000395794 SCAF1Q9H7N4 1312 aaKnown RBP20.73■□□□□ 0.91
CXCL12-205ENST00000395794 PPP1R15AO75807 674 aaPredicted RBP20.72■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 167.6 ms