RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 DCAF11Q8TEB1 546 aa19.4■□□□□ 0.7
SNCA-204ENST00000394989 SUPT16HQ9Y5B9 1047 aaKnown RBP19.4■□□□□ 0.7
SNCA-204ENST00000394989 CCDC144AA2RUR9 1427 aa19.4■□□□□ 0.7
SNCA-204ENST00000394989 ZFYVE16Q7Z3T8 1539 aa19.39■□□□□ 0.69
SNCA-204ENST00000394989 KDM2AQ9Y2K7 1162 aa19.39■□□□□ 0.69
SNCA-204ENST00000394989 BCANQ96GW7 911 aa19.38■□□□□ 0.69
SNCA-204ENST00000394989 AFAP1Q8N556 730 aa19.38■□□□□ 0.69
SNCA-204ENST00000394989 PRKRIP1Q9H875 184 aaPredicted RBP19.37■□□□□ 0.69
SNCA-204ENST00000394989 CCDC184Q52MB2 194 aa19.36■□□□□ 0.69
SNCA-204ENST00000394989 RTEL1-TNFRSF6BF6WH68 1400 aa19.36■□□□□ 0.69
SNCA-204ENST00000394989 FANCAO15360 1455 aa19.36■□□□□ 0.69
SNCA-204ENST00000394989 ATP10AO60312 1499 aa19.35■□□□□ 0.69
SNCA-204ENST00000394989 ASXL2Q76L83 1435 aa19.34■□□□□ 0.69
SNCA-204ENST00000394989 SPAG9O60271 1321 aaKnown RBP19.34■□□□□ 0.69
SNCA-204ENST00000394989 CARD11Q9BXL7 1154 aa19.34■□□□□ 0.69
SNCA-204ENST00000394989 TRPM1Q7Z4N2 1603 aa19.33■□□□□ 0.69
SNCA-204ENST00000394989 A2MP01023 1474 aa19.33■□□□□ 0.69
SNCA-204ENST00000394989 PRAG1Q86YV5 1406 aa19.33■□□□□ 0.69
SNCA-204ENST00000394989 INO80Q9ULG1 1556 aaPredicted RBP19.32■□□□□ 0.68
SNCA-204ENST00000394989 BCL11AQ9H165 835 aa19.31■□□□□ 0.68
SNCA-204ENST00000394989 DHX29Q7Z478 1369 aaKnown RBP19.31■□□□□ 0.68
SNCA-204ENST00000394989 RGL3Q3MIN7 710 aa19.3■□□□□ 0.68
SNCA-204ENST00000394989 OSCARQ8IYS5 282 aa19.3■□□□□ 0.68
SNCA-204ENST00000394989 DEPDC5O75140 1603 aa19.3■□□□□ 0.68
SNCA-204ENST00000394989 ATP7AQ04656 1500 aa19.3■□□□□ 0.68
SNCA-204ENST00000394989 E9PCH4 1651 aa19.29■□□□□ 0.68
SNCA-204ENST00000394989 ARID4BQ4LE39 1312 aaPredicted RBP19.29■□□□□ 0.68
SNCA-204ENST00000394989 ROCK2O75116 1388 aaKnown RBP19.29■□□□□ 0.68
SNCA-204ENST00000394989 ST20-MTHFSA0A0A6YYL1 179 aa19.28■□□□□ 0.68
SNCA-204ENST00000394989 ADGRL1O94910 1474 aa19.28■□□□□ 0.68
SNCA-204ENST00000394989 TSHZ2Q9NRE2 1034 aa19.27■□□□□ 0.68
SNCA-204ENST00000394989 SCAPERQ9BY12 1400 aa19.26■□□□□ 0.67
SNCA-204ENST00000394989 HNRNPUQ00839 825 aaKnown RBP eCLIP19.25■□□□□ 0.67
SNCA-204ENST00000394989 ANP32EQ9BTT0 268 aa19.25■□□□□ 0.67
SNCA-204ENST00000394989 POLR3GLQ9BT43 218 aa19.24■□□□□ 0.67
SNCA-204ENST00000394989 NBPF1Q3BBV0 1214 aa19.24■□□□□ 0.67
SNCA-204ENST00000394989 GPRASP1Q5JY77 1395 aa19.23■□□□□ 0.67
SNCA-204ENST00000394989 VWDEQ8N2E2 1590 aa19.22■□□□□ 0.67
SNCA-204ENST00000394989 LAMC1P11047 1609 aa19.21■□□□□ 0.67
SNCA-204ENST00000394989 MRS2Q9HD23 443 aa19.21■□□□□ 0.67
SNCA-204ENST00000394989 TRPM2O94759 1503 aa19.21■□□□□ 0.67
SNCA-204ENST00000394989 SPHKAPQ2M3C7 1700 aa19.2■□□□□ 0.66
SNCA-204ENST00000394989 PRDM15P57071 1507 aaPredicted RBP19.2■□□□□ 0.66
SNCA-204ENST00000394989 MROH1Q8NDA8 1641 aa19.2■□□□□ 0.66
SNCA-204ENST00000394989 KIDINS220Q9ULH0 1771 aa19.2■□□□□ 0.66
SNCA-204ENST00000394989 TET3O43151 1660 aa19.2■□□□□ 0.66
SNCA-204ENST00000394989 PTPRTO14522 1441 aa19.19■□□□□ 0.66
SNCA-204ENST00000394989 EIF2AK4Q9P2K8 1649 aaKnown RBP19.19■□□□□ 0.66
SNCA-204ENST00000394989 CEP152O94986 1710 aa19.17■□□□□ 0.66
SNCA-204ENST00000394989 FAM9BQ8IZU0 186 aa19.17■□□□□ 0.66
SNCA-204ENST00000394989 CLTCL1P53675 1640 aa19.17■□□□□ 0.66
SNCA-204ENST00000394989 FKBP8Q14318 412 aa19.17■□□□□ 0.66
SNCA-204ENST00000394989 RNF17Q9BXT8 1623 aaKnown RBP19.16■□□□□ 0.66
SNCA-204ENST00000394989 KIF3BO15066 747 aa19.15■□□□□ 0.66
SNCA-204ENST00000394989 NPM1P06748 294 aaKnown RBP eCLIP19.15■□□□□ 0.66
SNCA-204ENST00000394989 ZNF518AQ6AHZ1 1483 aa19.14■□□□□ 0.66
SNCA-204ENST00000394989 MADDQ8WXG6 1647 aa19.14■□□□□ 0.65
SNCA-204ENST00000394989 CNGB1Q14028 1251 aaPredicted RBP19.14■□□□□ 0.65
SNCA-204ENST00000394989 CD109Q6YHK3 1445 aa19.13■□□□□ 0.65
SNCA-204ENST00000394989 MYT1LQ9UL68 1186 aa19.13■□□□□ 0.65
SNCA-204ENST00000394989 TESK2Q96S53 571 aa19.12■□□□□ 0.65
SNCA-204ENST00000394989 KANK1Q14678 1352 aa19.11■□□□□ 0.65
SNCA-204ENST00000394989 COL17A1Q9UMD9 1497 aaPredicted RBP19.11■□□□□ 0.65
SNCA-204ENST00000394989 CFAP74Q9C0B2 1584 aa19.1■□□□□ 0.65
SNCA-204ENST00000394989 POGZQ7Z3K3 1410 aa19.09■□□□□ 0.65
SNCA-204ENST00000394989 DISP3Q9P2K9 1392 aa19.09■□□□□ 0.65
SNCA-204ENST00000394989 EFCAB6Q5THR3 1501 aa19.08■□□□□ 0.64
SNCA-204ENST00000394989 UGGT1Q9NYU2 1555 aa19.08■□□□□ 0.64
SNCA-204ENST00000394989 PPRC1Q5VV67 1664 aaKnown RBP19.07■□□□□ 0.64
SNCA-204ENST00000394989 FRMPD1Q5SYB0 1578 aa19.07■□□□□ 0.64
SNCA-204ENST00000394989 ZBED9Q6R2W3 1325 aa19.07■□□□□ 0.64
SNCA-204ENST00000394989 IQGAP1P46940 1657 aa19.06■□□□□ 0.64
SNCA-204ENST00000394989 NEURL4Q96JN8 1562 aa19.05■□□□□ 0.64
SNCA-204ENST00000394989 MLH3Q9UHC1 1453 aa19.05■□□□□ 0.64
SNCA-204ENST00000394989 NEFLP07196 543 aa19.04■□□□□ 0.64
SNCA-204ENST00000394989 LMTK2Q8IWU2 1503 aa19.04■□□□□ 0.64
SNCA-204ENST00000394989 HECW2Q9P2P5 1572 aa19.04■□□□□ 0.64
SNCA-204ENST00000394989 PER1O15534 1290 aaPredicted RBP19.02■□□□□ 0.64
SNCA-204ENST00000394989 ABCA6Q8N139 1617 aa19.02■□□□□ 0.64
SNCA-204ENST00000394989 PNISRQ8TF01 805 aaKnown RBP19.01■□□□□ 0.63
SNCA-204ENST00000394989 KTN1Q86UP2 1357 aaKnown RBP19.01■□□□□ 0.63
SNCA-204ENST00000394989 MROH2AA6NES4 1674 aa18.99■□□□□ 0.63
SNCA-204ENST00000394989 STAC3Q96MF2 364 aa18.99■□□□□ 0.63
SNCA-204ENST00000394989 MYBBP1AQ9BQG0 1328 aaKnown RBP18.99■□□□□ 0.63
SNCA-204ENST00000394989 RALBP1Q15311 655 aa18.99■□□□□ 0.63
SNCA-204ENST00000394989 KIF1BO60333 1816 aa18.99■□□□□ 0.63
SNCA-204ENST00000394989 PARD3Q8TEW0 1356 aa18.98■□□□□ 0.63
SNCA-204ENST00000394989 IFT172Q9UG01 1749 aa18.98■□□□□ 0.63
SNCA-204ENST00000394989 NEO1Q92859 1461 aa18.98■□□□□ 0.63
SNCA-204ENST00000394989 TMF1P82094 1093 aa18.97■□□□□ 0.63
SNCA-204ENST00000394989 KIAA1210Q9ULL0 1709 aa18.97■□□□□ 0.63
SNCA-204ENST00000394989 MAP3K4Q9Y6R4 1608 aa18.97■□□□□ 0.63
SNCA-204ENST00000394989 TMC1Q8TDI8 760 aa18.97■□□□□ 0.63
SNCA-204ENST00000394989 SCAF11Q99590 1463 aaKnown RBP18.97■□□□□ 0.63
SNCA-204ENST00000394989 BRD4O60885 1362 aaPredicted RBP18.96■□□□□ 0.63
SNCA-204ENST00000394989 RAPGEF3O95398 923 aa18.96■□□□□ 0.63
SNCA-204ENST00000394989 MYOM2P54296 1465 aa18.96■□□□□ 0.63
SNCA-204ENST00000394989 LRPPRCP42704 1394 aaKnown RBP18.95■□□□□ 0.62
SNCA-204ENST00000394989 NPATQ14207 1427 aa18.95■□□□□ 0.62
SNCA-204ENST00000394989 PANK3Q9H999 370 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms