RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 ROCK2O75116 1388 aaKnown RBP15.35■□□□□ 0.05
TCOF1-203ENST00000394269 CROCC2H7BZ55 1655 aa15.34■□□□□ 0.05
TCOF1-203ENST00000394269 CHGAP10645 457 aaKnown RBP15.34■□□□□ 0.05
TCOF1-203ENST00000394269 GGT6Q6P531 493 aa15.33■□□□□ 0.05
TCOF1-203ENST00000394269 ASXL2Q76L83 1435 aa15.33■□□□□ 0.04
TCOF1-203ENST00000394269 PRKRIP1Q9H875 184 aaPredicted RBP15.33■□□□□ 0.04
TCOF1-203ENST00000394269 FAM135AQ9P2D6 1515 aa15.33■□□□□ 0.04
TCOF1-203ENST00000394269 ARHGEF5Q12774 1597 aa15.32■□□□□ 0.04
TCOF1-203ENST00000394269 WDR7Q9Y4E6 1490 aa15.31■□□□□ 0.04
TCOF1-203ENST00000394269 UHRF1BP1LA0JNW5 1464 aa15.31■□□□□ 0.04
TCOF1-203ENST00000394269 FKBP8Q14318 412 aa15.31■□□□□ 0.04
TCOF1-203ENST00000394269 FANCAO15360 1455 aa15.31■□□□□ 0.04
TCOF1-203ENST00000394269 SUPT16HQ9Y5B9 1047 aaKnown RBP15.3■□□□□ 0.04
TCOF1-203ENST00000394269 RAPGEF3O95398 923 aa15.29■□□□□ 0.04
TCOF1-203ENST00000394269 CNTLNQ9NXG0 1405 aa15.29■□□□□ 0.04
TCOF1-203ENST00000394269 MYO5CQ9NQX4 1742 aa15.28■□□□□ 0.04
TCOF1-203ENST00000394269 SPATA31E1Q6ZUB1 1445 aa15.27■□□□□ 0.03
TCOF1-203ENST00000394269 ADGRL1O94910 1474 aa15.26■□□□□ 0.03
TCOF1-203ENST00000394269 NEFLP07196 543 aa15.26■□□□□ 0.03
TCOF1-203ENST00000394269 IRX6P78412 446 aaPredicted RBP15.25■□□□□ 0.03
TCOF1-203ENST00000394269 PLA2R1Q13018 1463 aa15.24■□□□□ 0.03
TCOF1-203ENST00000394269 KANK1Q14678 1352 aa15.23■□□□□ 0.03
TCOF1-203ENST00000394269 DUOX2Q9NRD8 1548 aa15.23■□□□□ 0.03
TCOF1-203ENST00000394269 CD109Q6YHK3 1445 aa15.23■□□□□ 0.03
TCOF1-203ENST00000394269 TMC1Q8TDI8 760 aa15.21■□□□□ 0.03
TCOF1-203ENST00000394269 ABCC1P33527 1531 aa15.21■□□□□ 0.02
TCOF1-203ENST00000394269 NUTM2DQ5VT03 806 aaPredicted RBP15.2■□□□□ 0.02
TCOF1-203ENST00000394269 SALL2Q9Y467 1007 aaPredicted RBP15.2■□□□□ 0.02
TCOF1-203ENST00000394269 ERBINQ96RT1 1412 aa15.2■□□□□ 0.02
TCOF1-203ENST00000394269 CC2D1BQ5T0F9 858 aaKnown RBP15.19■□□□□ 0.02
TCOF1-203ENST00000394269 MLECQ14165 292 aa15.19■□□□□ 0.02
TCOF1-203ENST00000394269 KDM5DQ9BY66 1539 aa15.18■□□□□ 0.02
TCOF1-203ENST00000394269 WASHC2CQ9Y4E1 1318 aa15.17■□□□□ 0.02
TCOF1-203ENST00000394269 FAM69CQ0P6D2 419 aa15.17■□□□□ 0.02
TCOF1-203ENST00000394269 UHRF1BP1Q6BDS2 1440 aa15.16■□□□□ 0.02
TCOF1-203ENST00000394269 PRAG1Q86YV5 1406 aa15.16■□□□□ 0.02
TCOF1-203ENST00000394269 DHX29Q7Z478 1369 aaKnown RBP15.16■□□□□ 0.02
TCOF1-203ENST00000394269 RALGAPBQ86X10 1494 aa15.16■□□□□ 0.02
TCOF1-203ENST00000394269 A2MP01023 1474 aa15.15■□□□□ 0.02
TCOF1-203ENST00000394269 CFAP70Q5T0N1 1121 aa15.14■□□□□ 0.01
TCOF1-203ENST00000394269 MAST1Q9Y2H9 1570 aa15.14■□□□□ 0.01
TCOF1-203ENST00000394269 RTEL1-TNFRSF6BF6WH68 1400 aa15.14■□□□□ 0.01
TCOF1-203ENST00000394269 TMF1P82094 1093 aa15.13■□□□□ 0.01
TCOF1-203ENST00000394269 PANK3Q9H999 370 aa15.13■□□□□ 0.01
TCOF1-203ENST00000394269 ATP7AQ04656 1500 aa15.12■□□□□ 0.01
TCOF1-203ENST00000394269 PLXNC1O60486 1568 aa15.11■□□□□ 0.01
TCOF1-203ENST00000394269 ZFYVE16Q7Z3T8 1539 aa15.11■□□□□ 0.01
TCOF1-203ENST00000394269 BCORL1Q5H9F3 1711 aa15.11■□□□□ 0.01
TCOF1-203ENST00000394269 TESK2Q96S53 571 aa15.1■□□□□ 0.01
TCOF1-203ENST00000394269 ARID4BQ4LE39 1312 aaPredicted RBP15.09■□□□□ 0.01
TCOF1-203ENST00000394269 ADGRF5Q8IZF2 1346 aa15.09■□□□□ 0.01
TCOF1-203ENST00000394269 DISP3Q9P2K9 1392 aa15.09■□□□□ 0.01
TCOF1-203ENST00000394269 KDM5CP41229 1560 aa15.09■□□□□ 0.01
TCOF1-203ENST00000394269 UNC13BO14795 1591 aa15.08■□□□□ 0.01
TCOF1-203ENST00000394269 TMEM132EQ6IEE7 984 aa15.07■□□□□ 0
TCOF1-203ENST00000394269 ZNF518AQ6AHZ1 1483 aa15.07■□□□□ 0
TCOF1-203ENST00000394269 SLC24A1O60721 1099 aa15.06■□□□□ 0
TCOF1-203ENST00000394269 TRAK1Q9UPV9 953 aa15.06■□□□□ 0
TCOF1-203ENST00000394269 IQGAP3Q86VI3 1631 aa15.06■□□□□ 0
TCOF1-203ENST00000394269 ABCA9Q8IUA7 1624 aa15.06■□□□□ 0
TCOF1-203ENST00000394269 ATP10AO60312 1499 aa15.06■□□□□ 0
TCOF1-203ENST00000394269 UGGT1Q9NYU2 1555 aa15.05■□□□□ -0
TCOF1-203ENST00000394269 SAFB2Q14151 953 aaKnown RBP eCLIP15.05■□□□□ -0
TCOF1-203ENST00000394269 CFAP65Q6ZU64 1925 aaKnown RBP15.04■□□□□ -0
TCOF1-203ENST00000394269 KNSTRNQ9Y448 316 aa15.04■□□□□ -0
TCOF1-203ENST00000394269 ARAP3Q8WWN8 1544 aa15.03■□□□□ -0
TCOF1-203ENST00000394269 PNISRQ8TF01 805 aaKnown RBP15.03■□□□□ -0
TCOF1-203ENST00000394269 RALBP1Q15311 655 aa15.02■□□□□ -0
TCOF1-203ENST00000394269 KTN1Q86UP2 1357 aaKnown RBP15.02■□□□□ -0
TCOF1-203ENST00000394269 MYBBP1AQ9BQG0 1328 aaKnown RBP15.02■□□□□ -0
TCOF1-203ENST00000394269 STAG3Q9UJ98 1225 aa15.01□□□□□ -0.01
TCOF1-203ENST00000394269 MAGI2Q86UL8 1455 aa15.01□□□□□ -0.01
TCOF1-203ENST00000394269 POGZQ7Z3K3 1410 aa15.01□□□□□ -0.01
TCOF1-203ENST00000394269 PER1O15534 1290 aaPredicted RBP15□□□□□ -0.01
TCOF1-203ENST00000394269 STK26Q9P289 416 aa15□□□□□ -0.01
TCOF1-203ENST00000394269 ZBED9Q6R2W3 1325 aa14.99□□□□□ -0.01
TCOF1-203ENST00000394269 GPRASP1Q5JY77 1395 aa14.99□□□□□ -0.01
TCOF1-203ENST00000394269 E9PCH4 1651 aa14.99□□□□□ -0.01
TCOF1-203ENST00000394269 FBXO31Q5XUX0 539 aaPredicted RBP14.99□□□□□ -0.01
TCOF1-203ENST00000394269 NLRP13Q86W25 1043 aa14.98□□□□□ -0.01
TCOF1-203ENST00000394269 PTPRTO14522 1441 aa14.98□□□□□ -0.01
TCOF1-203ENST00000394269 TNNT2P45379 298 aaPredicted RBP14.97□□□□□ -0.01
TCOF1-203ENST00000394269 IDI1Q13907 227 aa14.97□□□□□ -0.01
TCOF1-203ENST00000394269 CDCA8Q53HL2 280 aa14.97□□□□□ -0.01
TCOF1-203ENST00000394269 YEATS2Q9ULM3 1422 aa14.96□□□□□ -0.01
TCOF1-203ENST00000394269 INO80Q9ULG1 1556 aaPredicted RBP14.96□□□□□ -0.01
TCOF1-203ENST00000394269 NOS1P29475 1434 aa14.96□□□□□ -0.02
TCOF1-203ENST00000394269 PRDM15P57071 1507 aaPredicted RBP14.95□□□□□ -0.02
TCOF1-203ENST00000394269 TRPM1Q7Z4N2 1603 aa14.95□□□□□ -0.02
TCOF1-203ENST00000394269 NPATQ14207 1427 aa14.95□□□□□ -0.02
TCOF1-203ENST00000394269 KIDINS220Q9ULH0 1771 aa14.95□□□□□ -0.02
TCOF1-203ENST00000394269 CLTCL1P53675 1640 aa14.94□□□□□ -0.02
TCOF1-203ENST00000394269 TRPM2O94759 1503 aa14.94□□□□□ -0.02
TCOF1-203ENST00000394269 STAC3Q96MF2 364 aa14.94□□□□□ -0.02
TCOF1-203ENST00000394269 EIF3AQ14152 1382 aaKnown RBP14.92□□□□□ -0.02
TCOF1-203ENST00000394269 MLH3Q9UHC1 1453 aa14.91□□□□□ -0.02
TCOF1-203ENST00000394269 B4GALNT3Q6L9W6 998 aa14.91□□□□□ -0.02
TCOF1-203ENST00000394269 ESF1Q9H501 851 aaKnown RBP14.91□□□□□ -0.02
TCOF1-203ENST00000394269 DNAJC5Q9H3Z4 198 aa14.91□□□□□ -0.02
TCOF1-203ENST00000394269 SCAF11Q99590 1463 aaKnown RBP14.91□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms