RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 MSH5O43196 834 aa15.59■□□□□ 0.09
CUX1-204ENST00000393824 KIDINS220Q9ULH0 1771 aa15.59■□□□□ 0.09
CUX1-204ENST00000393824 FOXD1Q16676 465 aa15.59■□□□□ 0.09
CUX1-204ENST00000393824 PLXNC1O60486 1568 aa15.58■□□□□ 0.08
CUX1-204ENST00000393824 RTEL1-TNFRSF6BF6WH68 1400 aa15.57■□□□□ 0.08
CUX1-204ENST00000393824 FANCIQ9NVI1 1328 aa15.57■□□□□ 0.08
CUX1-204ENST00000393824 RICTORQ6R327 1708 aa15.57■□□□□ 0.08
CUX1-204ENST00000393824 YEATS2Q9ULM3 1422 aa15.57■□□□□ 0.08
CUX1-204ENST00000393824 TEX14Q8IWB6 1497 aa15.56■□□□□ 0.08
CUX1-204ENST00000393824 TIMELESSQ9UNS1 1208 aa15.55■□□□□ 0.08
CUX1-204ENST00000393824 MLH3Q9UHC1 1453 aa15.54■□□□□ 0.08
CUX1-204ENST00000393824 MPHOSPH9Q99550 1183 aa15.54■□□□□ 0.08
CUX1-204ENST00000393824 PZPP20742 1482 aa15.53■□□□□ 0.08
CUX1-204ENST00000393824 SIN3AQ96ST3 1273 aa15.53■□□□□ 0.08
CUX1-204ENST00000393824 DUOX2Q9NRD8 1548 aa15.53■□□□□ 0.08
CUX1-204ENST00000393824 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.52■□□□□ 0.081e-6■■□□□ 13.7
CUX1-204ENST00000393824 HECW2Q9P2P5 1572 aa15.52■□□□□ 0.08
CUX1-204ENST00000393824 ABCA6Q8N139 1617 aa15.52■□□□□ 0.08
CUX1-204ENST00000393824 NUP155O75694 1391 aa15.52■□□□□ 0.07
CUX1-204ENST00000393824 CCER2I3L3R5 266 aa15.5■□□□□ 0.07
CUX1-204ENST00000393824 DHX29Q7Z478 1369 aaKnown RBP15.5■□□□□ 0.07
CUX1-204ENST00000393824 SLC4A1APQ9BWU0 796 aaKnown RBP15.5■□□□□ 0.07
CUX1-204ENST00000393824 ERBINQ96RT1 1412 aa15.5■□□□□ 0.07
CUX1-204ENST00000393824 KIF3BO15066 747 aa15.49■□□□□ 0.07
CUX1-204ENST00000393824 DIP2CQ9Y2E4 1556 aa15.48■□□□□ 0.07
CUX1-204ENST00000393824 A2MP01023 1474 aa15.48■□□□□ 0.07
CUX1-204ENST00000393824 ZMYM4Q5VZL5 1548 aa15.46■□□□□ 0.07
CUX1-204ENST00000393824 PPP1R15AO75807 674 aaPredicted RBP15.46■□□□□ 0.07
CUX1-204ENST00000393824 PKD2Q13563 968 aa15.45■□□□□ 0.06
CUX1-204ENST00000393824 DDX10Q13206 875 aaKnown RBP15.45■□□□□ 0.06
CUX1-204ENST00000393824 SIGLEC1Q9BZZ2 1709 aa15.44■□□□□ 0.06
CUX1-204ENST00000393824 FAM135AQ9P2D6 1515 aa15.44■□□□□ 0.06
CUX1-204ENST00000393824 UNC13BO14795 1591 aa15.44■□□□□ 0.06
CUX1-204ENST00000393824 MAGI2Q86UL8 1455 aa15.44■□□□□ 0.06
CUX1-204ENST00000393824 MROH1Q8NDA8 1641 aa15.43■□□□□ 0.06
CUX1-204ENST00000393824 KDM5DQ9BY66 1539 aa15.43■□□□□ 0.06
CUX1-204ENST00000393824 GGT6Q6P531 493 aa15.42■□□□□ 0.06
CUX1-204ENST00000393824 ANKRD30BQ9BXX2 1392 aa15.41■□□□□ 0.06
CUX1-204ENST00000393824 DEPDC5O75140 1603 aa15.4■□□□□ 0.06
CUX1-204ENST00000393824 ATP10AO60312 1499 aa15.38■□□□□ 0.05
CUX1-204ENST00000393824 IQGAP3Q86VI3 1631 aa15.38■□□□□ 0.05
CUX1-204ENST00000393824 PRDM15P57071 1507 aaPredicted RBP15.37■□□□□ 0.05
CUX1-204ENST00000393824 EIF2AK4Q9P2K8 1649 aaKnown RBP15.37■□□□□ 0.05
CUX1-204ENST00000393824 ARHGEF40Q8TER5 1519 aa15.36■□□□□ 0.05
CUX1-204ENST00000393824 PLA2R1Q13018 1463 aa15.36■□□□□ 0.05
CUX1-204ENST00000393824 ANP32CO43423 234 aa15.36■□□□□ 0.05
CUX1-204ENST00000393824 VWDEQ8N2E2 1590 aa15.36■□□□□ 0.05
CUX1-204ENST00000393824 ANO8Q9HCE9 1232 aaPredicted RBP15.35■□□□□ 0.05
CUX1-204ENST00000393824 ERICH6BQ5W0A0 696 aa15.35■□□□□ 0.05
CUX1-204ENST00000393824 MLECQ14165 292 aa15.34■□□□□ 0.05
CUX1-204ENST00000393824 RNF17Q9BXT8 1623 aaKnown RBP15.34■□□□□ 0.05
CUX1-204ENST00000393824 DEKP35659 375 aaKnown RBP15.33■□□□□ 0.04
CUX1-204ENST00000393824 BCORL1Q5H9F3 1711 aa15.31■□□□□ 0.04
CUX1-204ENST00000393824 E9PCH4 1651 aa15.31■□□□□ 0.04
CUX1-204ENST00000393824 WASHC2CQ9Y4E1 1318 aa15.31■□□□□ 0.04
CUX1-204ENST00000393824 CEP152O94986 1710 aa15.3■□□□□ 0.04
CUX1-204ENST00000393824 ABCC3O15438 1527 aa15.3■□□□□ 0.04
CUX1-204ENST00000393824 KANK1Q14678 1352 aa15.29■□□□□ 0.04
CUX1-204ENST00000393824 REREQ9P2R6 1566 aa15.29■□□□□ 0.04
CUX1-204ENST00000393824 RPRD2Q5VT52 1461 aaKnown RBP15.29■□□□□ 0.04
CUX1-204ENST00000393824 NPATQ14207 1427 aa15.28■□□□□ 0.04
CUX1-204ENST00000393824 L3MBTL2Q969R5 705 aa15.27■□□□□ 0.04
CUX1-204ENST00000393824 AGLP35573 1532 aa15.27■□□□□ 0.04
CUX1-204ENST00000393824 TET3O43151 1660 aa15.27■□□□□ 0.03
CUX1-204ENST00000393824 EFCAB6Q5THR3 1501 aa15.27■□□□□ 0.03
CUX1-204ENST00000393824 UGGT1Q9NYU2 1555 aa15.27■□□□□ 0.03
CUX1-204ENST00000393824 ARID4BQ4LE39 1312 aaPredicted RBP15.27■□□□□ 0.03
CUX1-204ENST00000393824 LMTK2Q8IWU2 1503 aa15.26■□□□□ 0.03
CUX1-204ENST00000393824 TONSLQ96HA7 1378 aa15.25■□□□□ 0.03
CUX1-204ENST00000393824 CFAP65Q6ZU64 1925 aaKnown RBP15.24■□□□□ 0.03
CUX1-204ENST00000393824 PTPRTO14522 1441 aa15.24■□□□□ 0.03
CUX1-204ENST00000393824 FBXO31Q5XUX0 539 aaPredicted RBP15.23■□□□□ 0.03
CUX1-204ENST00000393824 PPP4R2Q9NY27 417 aa15.23■□□□□ 0.03
CUX1-204ENST00000393824 CCDC144AA2RUR9 1427 aa15.23■□□□□ 0.03
CUX1-204ENST00000393824 UBE2Q2Q8WVN8 375 aa15.22■□□□□ 0.03
CUX1-204ENST00000393824 CAMSAP1Q5T5Y3 1602 aa15.21■□□□□ 0.03
CUX1-204ENST00000393824 RGL3Q3MIN7 710 aa15.21■□□□□ 0.03
CUX1-204ENST00000393824 TRPM2O94759 1503 aa15.19■□□□□ 0.02
CUX1-204ENST00000393824 CLTCL1P53675 1640 aa15.19■□□□□ 0.02
CUX1-204ENST00000393824 NBPF8Q3BBV2 869 aa15.18■□□□□ 0.02
CUX1-204ENST00000393824 SPHKAPQ2M3C7 1700 aa15.18■□□□□ 0.02
CUX1-204ENST00000393824 CLTCQ00610 1675 aaKnown RBP15.18■□□□□ 0.02
CUX1-204ENST00000393824 HNRNPUQ00839 825 aaKnown RBP eCLIP15.17■□□□□ 0.021e-6■■■■□ 21.8
CUX1-204ENST00000393824 HIRIP3Q9BW71 556 aaPredicted RBP15.16■□□□□ 0.02
CUX1-204ENST00000393824 NOP58Q9Y2X3 529 aaKnown RBP15.16■□□□□ 0.02
CUX1-204ENST00000393824 NOS1P29475 1434 aa15.16■□□□□ 0.02
CUX1-204ENST00000393824 ARHGAP31Q2M1Z3 1444 aa15.16■□□□□ 0.02
CUX1-204ENST00000393824 SPATA31E1Q6ZUB1 1445 aa15.16■□□□□ 0.02
CUX1-204ENST00000393824 CEBPAP49715 358 aaPredicted RBP15.16■□□□□ 0.02
CUX1-204ENST00000393824 IRX6P78412 446 aaPredicted RBP15.16■□□□□ 0.02
CUX1-204ENST00000393824 KDM2AQ9Y2K7 1162 aa15.16■□□□□ 0.02
CUX1-204ENST00000393824 SYNMO15061 1565 aa15.16■□□□□ 0.02
CUX1-204ENST00000393824 ZC3H13Q5T200 1668 aaKnown RBP15.15■□□□□ 0.02
CUX1-204ENST00000393824 ZMYM3Q14202 1370 aa15.15■□□□□ 0.02
CUX1-204ENST00000393824 DCAF11Q8TEB1 546 aa15.15■□□□□ 0.02
CUX1-204ENST00000393824 ZNF326Q5BKZ1 582 aaKnown RBP15.14■□□□□ 0.01
CUX1-204ENST00000393824 PLPPR3Q6T4P5 718 aa15.14■□□□□ 0.01
CUX1-204ENST00000393824 IDI1Q13907 227 aa15.13■□□□□ 0.01
CUX1-204ENST00000393824 PPP6R1Q9UPN7 881 aa15.12■□□□□ 0.01
CUX1-204ENST00000393824 CNTLNQ9NXG0 1405 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms