RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 RFX1P22670 979 aa5.74□□□□□ -1.49
SCN1A-202ENST00000375405 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-202ENST00000375405 U2SURPO15042 1029 aaKnown RBP5.74□□□□□ -1.49
SCN1A-202ENST00000375405 IKQ13123 557 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-202ENST00000375405 CLASRPQ8N2M8 674 aaKnown RBP5.74□□□□□ -1.49
SCN1A-202ENST00000375405 HSP90AA2PQ14568 343 aaPredicted RBP5.74□□□□□ -1.49
SCN1A-202ENST00000375405 SF3A1Q15459 793 aaKnown RBP5.74□□□□□ -1.49
SCN1A-202ENST00000375405 LMOD3Q0VAK6 560 aa5.74□□□□□ -1.49
SCN1A-202ENST00000375405 MLECQ14165 292 aa5.74□□□□□ -1.49
SCN1A-202ENST00000375405 SEPT7Q16181 437 aaKnown RBP5.74□□□□□ -1.49
SCN1A-202ENST00000375405 RUFY1Q96T51 708 aa5.74□□□□□ -1.49
SCN1A-202ENST00000375405 TPM1P09493 284 aa5.73□□□□□ -1.49
SCN1A-202ENST00000375405 RTF1Q92541 710 aaKnown RBP5.73□□□□□ -1.49
SCN1A-202ENST00000375405 RGS3P49796 1198 aa5.73□□□□□ -1.49
SCN1A-202ENST00000375405 HOMER2Q9NSB8 354 aa5.73□□□□□ -1.49
SCN1A-202ENST00000375405 CCDC175P0C221 793 aa5.73□□□□□ -1.49
SCN1A-202ENST00000375405 SEPT6Q14141 434 aa5.73□□□□□ -1.49
SCN1A-202ENST00000375405 HSCBQ8IWL3 235 aa5.73□□□□□ -1.49
SCN1A-202ENST00000375405 HSP90AB4PQ58FF6 505 aa5.72□□□□□ -1.49
SCN1A-202ENST00000375405 SEPT10Q9P0V9 454 aa5.72□□□□□ -1.49
SCN1A-202ENST00000375405 DEKP35659 375 aaKnown RBP5.72□□□□□ -1.49
SCN1A-202ENST00000375405 NOM1Q5C9Z4 860 aaKnown RBP5.72□□□□□ -1.49
SCN1A-202ENST00000375405 HSP90AB3PQ58FF7 597 aa5.72□□□□□ -1.49
SCN1A-202ENST00000375405 VPS37DQ86XT2 251 aa5.72□□□□□ -1.49
SCN1A-202ENST00000375405 SF3B2Q13435 895 aaKnown RBP5.71□□□□□ -1.49
SCN1A-202ENST00000375405 ENOX2Q16206 610 aaKnown RBP5.71□□□□□ -1.49
SCN1A-202ENST00000375405 FOXD1Q16676 465 aa5.71□□□□□ -1.49
SCN1A-202ENST00000375405 DIAPH3Q9NSV4 1193 aa5.71□□□□□ -1.49
SCN1A-202ENST00000375405 SUPT16HQ9Y5B9 1047 aaKnown RBP5.71□□□□□ -1.49
SCN1A-202ENST00000375405 TONSLQ96HA7 1378 aa5.71□□□□□ -1.5
SCN1A-202ENST00000375405 IPO7O95373 1038 aaKnown RBP5.71□□□□□ -1.5
SCN1A-202ENST00000375405 CCDC173Q0VFZ6 552 aa5.71□□□□□ -1.5
SCN1A-202ENST00000375405 MFAP1P55081 439 aaKnown RBP5.71□□□□□ -1.5
SCN1A-202ENST00000375405 CSRNP3Q8WYN3 585 aa5.71□□□□□ -1.5
SCN1A-202ENST00000375405 COMMD10Q9Y6G5 202 aa5.71□□□□□ -1.5
SCN1A-202ENST00000375405 GPS2Q13227 327 aa5.71□□□□□ -1.5
SCN1A-202ENST00000375405 NOL8Q76FK4 1167 aaKnown RBP5.71□□□□□ -1.5
SCN1A-202ENST00000375405 DZIP1Q86YF9 867 aaKnown RBP5.71□□□□□ -1.5
SCN1A-202ENST00000375405 DRC1Q96MC2 740 aa5.71□□□□□ -1.5
SCN1A-202ENST00000375405 MTMR7Q9Y216 660 aa5.71□□□□□ -1.5
SCN1A-202ENST00000375405 CHIC2Q9UKJ5 165 aa5.7□□□□□ -1.5
SCN1A-202ENST00000375405 EVA1CP58658 441 aa5.7□□□□□ -1.5
SCN1A-202ENST00000375405 SYTL4Q96C24 671 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-202ENST00000375405 DYDC1Q8WWB3 177 aa5.7□□□□□ -1.5
SCN1A-202ENST00000375405 CDR1P51861 262 aa5.7□□□□□ -1.5
SCN1A-202ENST00000375405 TRIM6-TRIM34B2RNG4 842 aa5.7□□□□□ -1.5
SCN1A-202ENST00000375405 ZNF710Q8N1W2 664 aa5.7□□□□□ -1.5
SCN1A-202ENST00000375405 GPATCH3Q96I76 525 aa5.7□□□□□ -1.5
SCN1A-202ENST00000375405 BCL11BQ9C0K0 894 aaPredicted RBP5.7□□□□□ -1.5
SCN1A-202ENST00000375405 KCNH8Q96L42 1107 aa5.69□□□□□ -1.5
SCN1A-202ENST00000375405 GZF1Q9H116 711 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-202ENST00000375405 NOP58Q9Y2X3 529 aaKnown RBP5.69□□□□□ -1.5
SCN1A-202ENST00000375405 VGFO15240 615 aaPredicted RBP5.69□□□□□ -1.5
SCN1A-202ENST00000375405 CLGNO14967 610 aa5.69□□□□□ -1.5
SCN1A-202ENST00000375405 ATXN8OSP0DMR3 200 aa5.69□□□□□ -1.5
SCN1A-202ENST00000375405 KCNA4P22459 653 aa5.69□□□□□ -1.5
SCN1A-202ENST00000375405 MATR3P43243 847 aaKnown RBP eCLIP5.69□□□□□ -1.51e-10■■■■■ 37.8
SCN1A-202ENST00000375405 MRPS9P82933 396 aaKnown RBP5.69□□□□□ -1.5
SCN1A-202ENST00000375405 GRM1Q13255 1194 aa5.69□□□□□ -1.5
SCN1A-202ENST00000375405 ANKRD18AQ8IVF6 992 aa5.69□□□□□ -1.5
SCN1A-202ENST00000375405 RGS22Q8NE09 1264 aa5.69□□□□□ -1.5
SCN1A-202ENST00000375405 EZRP15311 586 aaKnown RBP5.68□□□□□ -1.5
SCN1A-202ENST00000375405 FLIIQ13045 1269 aa5.68□□□□□ -1.5
SCN1A-202ENST00000375405 ZNF592Q92610 1267 aa5.68□□□□□ -1.5
SCN1A-202ENST00000375405 OFD1O75665 1012 aa5.68□□□□□ -1.5
SCN1A-202ENST00000375405 DCTN1Q14203 1278 aa5.68□□□□□ -1.5
SCN1A-202ENST00000375405 CRBNQ96SW2 442 aa5.68□□□□□ -1.5
SCN1A-202ENST00000375405 ZNF771Q7L3S4 317 aaPredicted RBP5.68□□□□□ -1.5
SCN1A-202ENST00000375405 CEP63Q96MT8 703 aa5.68□□□□□ -1.5
SCN1A-202ENST00000375405 H0YHG0 523 aa5.68□□□□□ -1.5
SCN1A-202ENST00000375405 CCDC47Q96A33 483 aaKnown RBP5.68□□□□□ -1.5
SCN1A-202ENST00000375405 H3BQV1 296 aa5.68□□□□□ -1.5
SCN1A-202ENST00000375405 IFFO2Q5TF58 517 aa5.68□□□□□ -1.5
SCN1A-202ENST00000375405 NUDCQ9Y266 331 aa5.68□□□□□ -1.5
SCN1A-202ENST00000375405 SYCP1Q15431 976 aa5.67□□□□□ -1.5
SCN1A-202ENST00000375405 FYB1O15117 783 aa5.67□□□□□ -1.5
SCN1A-202ENST00000375405 CCDC112Q8NEF3 446 aa5.67□□□□□ -1.5
SCN1A-202ENST00000375405 RGL3Q3MIN7 710 aa5.67□□□□□ -1.5
SCN1A-202ENST00000375405 MNS1Q8NEH6 495 aa5.67□□□□□ -1.5
SCN1A-202ENST00000375405 FOXD4L5Q5VV16 416 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-202ENST00000375405 FOXD4L4Q8WXT5 416 aaPredicted RBP5.67□□□□□ -1.5
SCN1A-202ENST00000375405 TSPYL1Q9H0U9 437 aa5.67□□□□□ -1.5
SCN1A-202ENST00000375405 MPHOSPH10O00566 681 aaKnown RBP5.67□□□□□ -1.5
SCN1A-202ENST00000375405 SYNE3Q6ZMZ3 975 aa5.66□□□□□ -1.5
SCN1A-202ENST00000375405 RBM33Q96EV2 1170 aaKnown RBP5.66□□□□□ -1.5
SCN1A-202ENST00000375405 MCTP1Q6DN14 999 aa5.66□□□□□ -1.5
SCN1A-202ENST00000375405 B4GALNT3Q6L9W6 998 aa5.66□□□□□ -1.5
SCN1A-202ENST00000375405 CHMP4BQ9H444 224 aaKnown RBP5.66□□□□□ -1.5
SCN1A-202ENST00000375405 SYAP1Q96A49 352 aaPredicted RBP5.66□□□□□ -1.5
SCN1A-202ENST00000375405 PABPN1LA6NDY0 278 aaKnown RBP5.66□□□□□ -1.5
SCN1A-202ENST00000375405 TTLL5Q6EMB2 1281 aa5.66□□□□□ -1.5
SCN1A-202ENST00000375405 ANKRD20A12PQ8NF67 263 aa5.66□□□□□ -1.5
SCN1A-202ENST00000375405 GOLGA6L19H0YKK7 550 aa5.65□□□□□ -1.5
SCN1A-202ENST00000375405 AXDND1Q5T1B0 1012 aaPredicted RBP5.65□□□□□ -1.5
SCN1A-202ENST00000375405 GBP2P32456 591 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-202ENST00000375405 ANAPC15P60006 121 aa5.65□□□□□ -1.51
SCN1A-202ENST00000375405 SAFB2Q14151 953 aaKnown RBP eCLIP5.65□□□□□ -1.51
SCN1A-202ENST00000375405 PPM1EQ8WY54 764 aa5.65□□□□□ -1.51
SCN1A-202ENST00000375405 SLKQ9H2G2 1235 aaPredicted RBP5.65□□□□□ -1.51
SCN1A-202ENST00000375405 FOXD4L6Q3SYB3 417 aaPredicted RBP5.65□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms