RNA–Protein interactions for RNA: ENST00000372235.7

TMEM53-201, Transcript of transmembrane protein 53, humanhuman

TSL 2 BASIC

Gene TMEM53, Length 890 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-201ENST00000372235 SHANK2Q9UPX8 1470 aa29.37■■■□□ 2.29
TMEM53-201ENST00000372235 PTPN23Q9H3S7 1636 aa29.37■■■□□ 2.29
TMEM53-201ENST00000372235 EIF2AK4Q9P2K8 1649 aaKnown RBP29.37■■■□□ 2.29
TMEM53-201ENST00000372235 CERKQ8TCT0 537 aa29.35■■■□□ 2.29
TMEM53-201ENST00000372235 FGD6Q6ZV73 1430 aa29.35■■■□□ 2.29
TMEM53-201ENST00000372235 PZPP20742 1482 aa29.35■■■□□ 2.29
TMEM53-201ENST00000372235 DUOX2Q9NRD8 1548 aa29.35■■■□□ 2.29
TMEM53-201ENST00000372235 MYO3AQ8NEV4 1616 aa29.34■■■□□ 2.29
TMEM53-201ENST00000372235 ZNF142P52746 1687 aaPredicted RBP29.34■■■□□ 2.29
TMEM53-201ENST00000372235 PKD2Q13563 968 aa29.33■■■□□ 2.29
TMEM53-201ENST00000372235 CAMSAP1Q5T5Y3 1602 aa29.33■■■□□ 2.29
TMEM53-201ENST00000372235 CEP170BQ9Y4F5 1589 aaPredicted RBP29.32■■■□□ 2.28
TMEM53-201ENST00000372235 PLA2R1Q13018 1463 aa29.32■■■□□ 2.28
TMEM53-201ENST00000372235 TCOF1Q13428 1488 aaKnown RBP29.32■■■□□ 2.28
TMEM53-201ENST00000372235 RNF17Q9BXT8 1623 aaKnown RBP29.31■■■□□ 2.28
TMEM53-201ENST00000372235 ABCC5O15440 1437 aa29.29■■■□□ 2.28
TMEM53-201ENST00000372235 TNRQ92752 1358 aa29.29■■■□□ 2.28
TMEM53-201ENST00000372235 ZC3H13Q5T200 1668 aaKnown RBP29.29■■■□□ 2.28
TMEM53-201ENST00000372235 A2ML1A8K2U0 1454 aa29.29■■■□□ 2.28
TMEM53-201ENST00000372235 DAPK1P53355 1430 aa29.28■■■□□ 2.28
TMEM53-201ENST00000372235 KIF15Q9NS87 1388 aa29.27■■■□□ 2.28
TMEM53-201ENST00000372235 CROCC2H7BZ55 1655 aa29.27■■■□□ 2.28
TMEM53-201ENST00000372235 ERBINQ96RT1 1412 aa29.27■■■□□ 2.28
TMEM53-201ENST00000372235 DNMT1P26358 1616 aaKnown RBP29.26■■■□□ 2.27
TMEM53-201ENST00000372235 ANKRD30AQ9BXX3 1397 aa29.24■■■□□ 2.27
TMEM53-201ENST00000372235 NLRP1Q9C000 1473 aa29.23■■■□□ 2.27
TMEM53-201ENST00000372235 FBXO31Q5XUX0 539 aaPredicted RBP29.22■■■□□ 2.27
TMEM53-201ENST00000372235 RRP7BPQ9NSQ0 103 aa29.22■■■□□ 2.27
TMEM53-201ENST00000372235 ABCC3O15438 1527 aa29.21■■■□□ 2.27
TMEM53-201ENST00000372235 THEMISQ8N1K5 641 aaPredicted RBP29.19■■■□□ 2.26
TMEM53-201ENST00000372235 NCKAP5LQ9HCH0 1330 aa29.19■■■□□ 2.26
TMEM53-201ENST00000372235 KANK1Q14678 1352 aa29.16■■■□□ 2.26
TMEM53-201ENST00000372235 FAM50AQ14320 339 aaKnown RBP29.14■■■□□ 2.26
TMEM53-201ENST00000372235 MROH1Q8NDA8 1641 aa29.13■■■□□ 2.25
TMEM53-201ENST00000372235 PRDM15P57071 1507 aaPredicted RBP29.13■■■□□ 2.25
TMEM53-201ENST00000372235 IQSEC2Q5JU85 1478 aa29.12■■■□□ 2.25
TMEM53-201ENST00000372235 SPATA31D1Q6ZQQ2 1576 aa29.12■■■□□ 2.25
TMEM53-201ENST00000372235 ARHGAP31Q2M1Z3 1444 aa29.11■■■□□ 2.25
TMEM53-201ENST00000372235 CHIC2Q9UKJ5 165 aa29.11■■■□□ 2.25
TMEM53-201ENST00000372235 UGGT1Q9NYU2 1555 aa29.1■■■□□ 2.25
TMEM53-201ENST00000372235 ANKLE2Q86XL3 938 aa29.1■■■□□ 2.25
TMEM53-201ENST00000372235 ADGRL2O95490 1459 aa29.1■■■□□ 2.25
TMEM53-201ENST00000372235 ERVK-7P63135 1459 aa29.08■■■□□ 2.25
TMEM53-201ENST00000372235 LTBP4Q8N2S1 1624 aa29.07■■■□□ 2.24
TMEM53-201ENST00000372235 DEPDC5O75140 1603 aa29.06■■■□□ 2.24
TMEM53-201ENST00000372235 GRWD1Q9BQ67 446 aaKnown RBP eCLIP29.05■■■□□ 2.24
TMEM53-201ENST00000372235 CEP152O94986 1710 aa29.05■■■□□ 2.24
TMEM53-201ENST00000372235 POLR1AO95602 1720 aaPredicted RBP29.03■■■□□ 2.24
TMEM53-201ENST00000372235 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.02■■■□□ 2.24
TMEM53-201ENST00000372235 LMTK2Q8IWU2 1503 aa29■■■□□ 2.23
TMEM53-201ENST00000372235 ZNF335Q9H4Z2 1342 aaPredicted RBP28.98■■■□□ 2.23
TMEM53-201ENST00000372235 ANKRD50Q9ULJ7 1429 aa28.97■■■□□ 2.23
TMEM53-201ENST00000372235 MED14O60244 1454 aa28.96■■■□□ 2.23
TMEM53-201ENST00000372235 VWDEQ8N2E2 1590 aa28.94■■■□□ 2.22
TMEM53-201ENST00000372235 NEURL4Q96JN8 1562 aa28.93■■■□□ 2.22
TMEM53-201ENST00000372235 ROCK1Q13464 1354 aa28.93■■■□□ 2.22
TMEM53-201ENST00000372235 NPHP4O75161 1426 aaPredicted RBP28.93■■■□□ 2.22
TMEM53-201ENST00000372235 CPS1P31327 1500 aa28.9■■■□□ 2.22
TMEM53-201ENST00000372235 CFAP65Q6ZU64 1925 aaKnown RBP28.89■■■□□ 2.22
TMEM53-201ENST00000372235 STAG3Q9UJ98 1225 aa28.89■■■□□ 2.22
TMEM53-201ENST00000372235 EID1Q9Y6B2 187 aa28.88■■■□□ 2.21
TMEM53-201ENST00000372235 RPRD2Q5VT52 1461 aaKnown RBP28.87■■■□□ 2.21
TMEM53-201ENST00000372235 UBR1Q8IWV7 1749 aa28.87■■■□□ 2.21
TMEM53-201ENST00000372235 EFCAB6Q5THR3 1501 aa28.86■■■□□ 2.21
TMEM53-201ENST00000372235 SLC52A1Q9NWF4 448 aa28.85■■■□□ 2.21
TMEM53-201ENST00000372235 IQGAP1P46940 1657 aa28.84■■■□□ 2.21
TMEM53-201ENST00000372235 SLIT1O75093 1534 aa28.84■■■□□ 2.21
TMEM53-201ENST00000372235 KDM5AP29375 1690 aaKnown RBP28.83■■■□□ 2.21
TMEM53-201ENST00000372235 SCAF11Q99590 1463 aaKnown RBP28.83■■■□□ 2.21
TMEM53-201ENST00000372235 ARHGAP23Q9P227 1491 aa28.82■■■□□ 2.2
TMEM53-201ENST00000372235 TXNDC2Q86VQ3 553 aa28.81■■■□□ 2.2
TMEM53-201ENST00000372235 NOS1P29475 1434 aa28.8■■■□□ 2.2
TMEM53-201ENST00000372235 UBAP1LF5GYI3 381 aa28.8■■■□□ 2.2
TMEM53-201ENST00000372235 IDI1Q13907 227 aa28.79■■■□□ 2.2
TMEM53-201ENST00000372235 TMEM2Q9UHN6 1383 aa28.77■■■□□ 2.2
TMEM53-201ENST00000372235 PIK3C2BO00750 1634 aa28.77■■■□□ 2.2
TMEM53-201ENST00000372235 TET3O43151 1660 aa28.77■■■□□ 2.2
TMEM53-201ENST00000372235 UNC13BO14795 1591 aa28.76■■■□□ 2.19
TMEM53-201ENST00000372235 TOM1O60784 492 aa28.75■■■□□ 2.19
TMEM53-201ENST00000372235 PPARGC1BQ86YN6 1023 aaKnown RBP28.75■■■□□ 2.19
TMEM53-201ENST00000372235 ITGAEP38570 1179 aa28.74■■■□□ 2.19
TMEM53-201ENST00000372235 SYNMO15061 1565 aa28.72■■■□□ 2.19
TMEM53-201ENST00000372235 LTKP29376 864 aa28.72■■■□□ 2.19
TMEM53-201ENST00000372235 HDGFP51858 240 aaKnown RBP28.72■■■□□ 2.19
TMEM53-201ENST00000372235 GCC2Q8IWJ2 1684 aa28.71■■■□□ 2.19
TMEM53-201ENST00000372235 RRBP1Q9P2E9 1410 aaKnown RBP28.69■■■□□ 2.18
TMEM53-201ENST00000372235 ADGRB3O60242 1522 aa28.69■■■□□ 2.18
TMEM53-201ENST00000372235 NUP155O75694 1391 aa28.67■■■□□ 2.18
TMEM53-201ENST00000372235 IQGAP3Q86VI3 1631 aa28.66■■■□□ 2.18
TMEM53-201ENST00000372235 LRRC7Q96NW7 1537 aa28.59■■■□□ 2.17
TMEM53-201ENST00000372235 ABCF1Q8NE71 845 aaKnown RBP eCLIP28.58■■■□□ 2.17
TMEM53-201ENST00000372235 SCAF1Q9H7N4 1312 aaKnown RBP28.57■■■□□ 2.16
TMEM53-201ENST00000372235 E9PCH4 1651 aa28.57■■■□□ 2.16
TMEM53-201ENST00000372235 PPP1R15AO75807 674 aaPredicted RBP28.55■■■□□ 2.16
TMEM53-201ENST00000372235 BCANQ96GW7 911 aa28.55■■■□□ 2.16
TMEM53-201ENST00000372235 PIP4K2BP78356 416 aa28.54■■■□□ 2.16
TMEM53-201ENST00000372235 KCNA6P17658 529 aa28.53■■■□□ 2.16
TMEM53-201ENST00000372235 STRCP1A6NGW2 1772 aa28.52■■■□□ 2.16
TMEM53-201ENST00000372235 TMEM131LA2VDJ0 1609 aa28.52■■■□□ 2.16
TMEM53-201ENST00000372235 CHGAP10645 457 aaKnown RBP28.52■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms