RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 PPM1FP49593 454 aaPredicted RBP5.19□□□□□ -1.58
USH2A-202ENST00000366942 NCLP19338 710 aaKnown RBP5.18□□□□□ -1.58
USH2A-202ENST00000366942 BMS1Q14692 1282 aaKnown RBP5.18□□□□□ -1.58
USH2A-202ENST00000366942 DIEXFQ68CQ4 756 aaKnown RBP5.18□□□□□ -1.58
USH2A-202ENST00000366942 CHMP3Q9Y3E7 222 aa5.18□□□□□ -1.58
USH2A-202ENST00000366942 OTUD7BQ6GQQ9 843 aa5.18□□□□□ -1.58
USH2A-202ENST00000366942 RAB3GAP2Q9H2M9 1393 aa5.18□□□□□ -1.58
USH2A-202ENST00000366942 CADPSQ9ULU8 1353 aa5.18□□□□□ -1.58
USH2A-202ENST00000366942 GOLGA3Q08378 1498 aa5.18□□□□□ -1.58
USH2A-202ENST00000366942 HSP90AB1P08238 724 aaKnown RBP5.17□□□□□ -1.58
USH2A-202ENST00000366942 STRN4Q9NRL3 753 aa5.17□□□□□ -1.58
USH2A-202ENST00000366942 SOGA1O94964 1423 aa5.17□□□□□ -1.58
USH2A-202ENST00000366942 UACAQ9BZF9 1416 aa5.17□□□□□ -1.58
USH2A-202ENST00000366942 KIAA2012Q0VF49 1180 aa5.17□□□□□ -1.58
USH2A-202ENST00000366942 JDP2Q8WYK2 163 aa5.17□□□□□ -1.58
USH2A-202ENST00000366942 ZNF652Q9Y2D9 606 aa5.17□□□□□ -1.58
USH2A-202ENST00000366942 MSH6P52701 1360 aa5.17□□□□□ -1.58
USH2A-202ENST00000366942 CCDC18Q5T9S5 1454 aa5.17□□□□□ -1.58
USH2A-202ENST00000366942 GPATCH3Q96I76 525 aa5.17□□□□□ -1.58
USH2A-202ENST00000366942 TOM1L2Q6ZVM7 507 aa5.16□□□□□ -1.58
USH2A-202ENST00000366942 U2SURPO15042 1029 aaKnown RBP5.16□□□□□ -1.58
USH2A-202ENST00000366942 GNL2Q13823 731 aaKnown RBP5.16□□□□□ -1.58
USH2A-202ENST00000366942 WDR70Q9NW82 654 aa5.16□□□□□ -1.58
USH2A-202ENST00000366942 SMARCA2P51531 1590 aa5.16□□□□□ -1.58
USH2A-202ENST00000366942 ROCK1Q13464 1354 aa5.16□□□□□ -1.58
USH2A-202ENST00000366942 DDX58O95786 925 aaKnown RBP5.16□□□□□ -1.58
USH2A-202ENST00000366942 PRKCSHP14314 528 aaPredicted RBP5.16□□□□□ -1.58
USH2A-202ENST00000366942 TSPYL2Q9H2G4 693 aaPredicted RBP5.16□□□□□ -1.58
USH2A-202ENST00000366942 EIF4G1Q04637 1599 aaKnown RBP5.16□□□□□ -1.58
USH2A-202ENST00000366942 NRDCO43847 1150 aa5.16□□□□□ -1.58
USH2A-202ENST00000366942 MPHOSPH10O00566 681 aaKnown RBP5.15□□□□□ -1.58
USH2A-202ENST00000366942 MYO1BO43795 1136 aa5.15□□□□□ -1.58
USH2A-202ENST00000366942 ADAMTS2O95450 1211 aa5.15□□□□□ -1.58
USH2A-202ENST00000366942 RXRBP28702 533 aa5.15□□□□□ -1.58
USH2A-202ENST00000366942 TRIM26Q12899 539 aaPredicted RBP5.15□□□□□ -1.58
USH2A-202ENST00000366942 BCL2L13Q9BXK5 485 aa5.15□□□□□ -1.58
USH2A-202ENST00000366942 MINK1Q8N4C8 1332 aaPredicted RBP5.15□□□□□ -1.58
USH2A-202ENST00000366942 NLRP13Q86W25 1043 aa5.15□□□□□ -1.58
USH2A-202ENST00000366942 AK7Q96M32 723 aa5.15□□□□□ -1.58
USH2A-202ENST00000366942 B4DLN1 442 aa5.15□□□□□ -1.58
USH2A-202ENST00000366942 ZPR1O75312 459 aa5.15□□□□□ -1.58
USH2A-202ENST00000366942 MRPL12P52815 198 aaKnown RBP5.15□□□□□ -1.58
USH2A-202ENST00000366942 TCIRG1Q13488 830 aa5.15□□□□□ -1.58
USH2A-202ENST00000366942 PKD2Q13563 968 aa5.15□□□□□ -1.58
USH2A-202ENST00000366942 CABP1Q9NZU7 370 aa5.15□□□□□ -1.58
USH2A-202ENST00000366942 RAD21O60216 631 aa5.15□□□□□ -1.59
USH2A-202ENST00000366942 TATP17735 454 aaPredicted RBP5.15□□□□□ -1.59
USH2A-202ENST00000366942 ESCO1Q5FWF5 840 aa5.15□□□□□ -1.59
USH2A-202ENST00000366942 LTV1Q96GA3 475 aaPredicted RBP5.14□□□□□ -1.59
USH2A-202ENST00000366942 ADRA2BP18089 450 aa5.14□□□□□ -1.59
USH2A-202ENST00000366942 HOOK2Q96ED9 719 aa5.14□□□□□ -1.59
USH2A-202ENST00000366942 USP35Q9P2H5 1018 aa5.14□□□□□ -1.59
USH2A-202ENST00000366942 TMF1P82094 1093 aa5.14□□□□□ -1.59
USH2A-202ENST00000366942 GNL3LQ9NVN8 582 aaKnown RBP5.14□□□□□ -1.59
USH2A-202ENST00000366942 LAS1LQ9Y4W2 734 aaKnown RBP5.14□□□□□ -1.59
USH2A-202ENST00000366942 EEA1Q15075 1411 aa5.14□□□□□ -1.59
USH2A-202ENST00000366942 SAFB2Q14151 953 aaKnown RBP eCLIP5.14□□□□□ -1.59
USH2A-202ENST00000366942 TMEM132AQ24JP5 1023 aa5.14□□□□□ -1.59
USH2A-202ENST00000366942 FLAD1Q8NFF5 587 aa5.14□□□□□ -1.59
USH2A-202ENST00000366942 LRRC59Q96AG4 307 aaKnown RBP5.14□□□□□ -1.59
USH2A-202ENST00000366942 TAOK2Q9UL54 1235 aa5.14□□□□□ -1.59
USH2A-202ENST00000366942 COG3Q96JB2 828 aa5.14□□□□□ -1.59
USH2A-202ENST00000366942 NAP1L2Q9ULW6 460 aaPredicted RBP5.14□□□□□ -1.59
USH2A-202ENST00000366942 ELMSAN1Q6PJG2 1045 aa5.13□□□□□ -1.59
USH2A-202ENST00000366942 FHAD1B1AJZ9 1412 aa5.13□□□□□ -1.59
USH2A-202ENST00000366942 PDE6BP35913 854 aa5.13□□□□□ -1.59
USH2A-202ENST00000366942 CCDC174Q6PII3 467 aa5.13□□□□□ -1.59
USH2A-202ENST00000366942 EIF4E1BA6NMX2 242 aaKnown RBP5.13□□□□□ -1.59
USH2A-202ENST00000366942 TNNT2P45379 298 aaPredicted RBP5.13□□□□□ -1.59
USH2A-202ENST00000366942 FTSJ3Q8IY81 847 aaKnown RBP5.13□□□□□ -1.59
USH2A-202ENST00000366942 KIF6Q6ZMV9 814 aa5.13□□□□□ -1.59
USH2A-202ENST00000366942 UTP14AQ9BVJ6 771 aaKnown RBP5.13□□□□□ -1.59
USH2A-202ENST00000366942 GRIN3BO60391 1043 aa5.13□□□□□ -1.59
USH2A-202ENST00000366942 TRIM44Q96DX7 344 aaPredicted RBP5.13□□□□□ -1.59
USH2A-202ENST00000366942 TEX14Q8IWB6 1497 aa5.12□□□□□ -1.59
USH2A-202ENST00000366942 DHX16O60231 1041 aaKnown RBP5.12□□□□□ -1.59
USH2A-202ENST00000366942 IKQ13123 557 aaPredicted RBP5.12□□□□□ -1.59
USH2A-202ENST00000366942 SART3Q15020 963 aaKnown RBP5.12□□□□□ -1.59
USH2A-202ENST00000366942 SMARCC1Q92922 1105 aaPredicted RBP5.12□□□□□ -1.59
USH2A-202ENST00000366942 VTI1AQ96AJ9 217 aa5.12□□□□□ -1.59
USH2A-202ENST00000366942 HIRIP3Q9BW71 556 aaPredicted RBP5.12□□□□□ -1.59
USH2A-202ENST00000366942 BRDTQ58F21 947 aaPredicted RBP5.12□□□□□ -1.59
USH2A-202ENST00000366942 MORC1Q86VD1 984 aa5.12□□□□□ -1.59
USH2A-202ENST00000366942 MTIF3Q9H2K0 278 aaKnown RBP5.12□□□□□ -1.59
USH2A-202ENST00000366942 A0A087WZG4 1122 aa5.12□□□□□ -1.59
USH2A-202ENST00000366942 APBB1O00213 710 aa5.12□□□□□ -1.59
USH2A-202ENST00000366942 EXOC5O00471 708 aa5.12□□□□□ -1.59
USH2A-202ENST00000366942 AKAP17AQ02040 695 aaKnown RBP5.12□□□□□ -1.59
USH2A-202ENST00000366942 RTL5Q5HYW3 569 aaPredicted RBP5.12□□□□□ -1.59
USH2A-202ENST00000366942 TMEM106CQ9BVX2 250 aa5.12□□□□□ -1.59
USH2A-202ENST00000366942 TOMM22Q9NS69 142 aa5.12□□□□□ -1.59
USH2A-202ENST00000366942 MYCNP04198 464 aaPredicted RBP5.12□□□□□ -1.59
USH2A-202ENST00000366942 RBM5P52756 815 aaKnown RBP eCLIP5.12□□□□□ -1.59
USH2A-202ENST00000366942 RASSF8Q8NHQ8 419 aa5.12□□□□□ -1.59
USH2A-202ENST00000366942 ANKRD30AQ9BXX3 1397 aa5.12□□□□□ -1.59
USH2A-202ENST00000366942 STAC3Q96MF2 364 aa5.11□□□□□ -1.59
USH2A-202ENST00000366942 NOC2LQ9Y3T9 749 aaKnown RBP5.11□□□□□ -1.59
USH2A-202ENST00000366942 SMG6Q86US8 1419 aaKnown RBP5.11□□□□□ -1.59
USH2A-202ENST00000366942 ATF7IPQ6VMQ6 1270 aa5.11□□□□□ -1.59
USH2A-202ENST00000366942 C8orf37Q96NL8 207 aa5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms