RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 SYCP2Q9BX26 1530 aa14.24□□□□□ -0.13
HMGB1P39-201ENST00000366304 SHANK2Q9UPX8 1470 aa14.24□□□□□ -0.13
HMGB1P39-201ENST00000366304 DNMT1P26358 1616 aaKnown RBP14.23□□□□□ -0.13
HMGB1P39-201ENST00000366304 RGS17Q9UGC6 210 aaPredicted RBP14.23□□□□□ -0.13
HMGB1P39-201ENST00000366304 CDC42BPAQ5VT25 1732 aa14.23□□□□□ -0.13
HMGB1P39-201ENST00000366304 SPAG9O60271 1321 aaKnown RBP14.22□□□□□ -0.13
HMGB1P39-201ENST00000366304 TOM1O60784 492 aa14.22□□□□□ -0.13
HMGB1P39-201ENST00000366304 ZNF777Q9ULD5 760 aaPredicted RBP14.22□□□□□ -0.13
HMGB1P39-201ENST00000366304 A2ML1A8K2U0 1454 aa14.22□□□□□ -0.13
HMGB1P39-201ENST00000366304 VWDEQ8N2E2 1590 aa14.22□□□□□ -0.13
HMGB1P39-201ENST00000366304 CPS1P31327 1500 aa14.21□□□□□ -0.13
HMGB1P39-201ENST00000366304 A2MP01023 1474 aa14.21□□□□□ -0.13
HMGB1P39-201ENST00000366304 GGT6Q6P531 493 aa14.21□□□□□ -0.13
HMGB1P39-201ENST00000366304 ATP7AQ04656 1500 aa14.2□□□□□ -0.14
HMGB1P39-201ENST00000366304 UBTFP17480 764 aaKnown RBP14.2□□□□□ -0.14
HMGB1P39-201ENST00000366304 FBXO31Q5XUX0 539 aaPredicted RBP14.2□□□□□ -0.14
HMGB1P39-201ENST00000366304 FOXD4L1Q9NU39 408 aa14.2□□□□□ -0.14
HMGB1P39-201ENST00000366304 INO80Q9ULG1 1556 aaPredicted RBP14.2□□□□□ -0.14
HMGB1P39-201ENST00000366304 GPATCH8Q9UKJ3 1502 aaKnown RBP14.2□□□□□ -0.14
HMGB1P39-201ENST00000366304 CASKIN1Q8WXD9 1431 aa14.16□□□□□ -0.14
HMGB1P39-201ENST00000366304 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.15□□□□□ -0.14
HMGB1P39-201ENST00000366304 ZBTB22O15209 634 aa14.15□□□□□ -0.14
HMGB1P39-201ENST00000366304 POLR1AO95602 1720 aaPredicted RBP14.15□□□□□ -0.14
HMGB1P39-201ENST00000366304 KIAA1107Q9UPP5 1409 aa14.15□□□□□ -0.14
HMGB1P39-201ENST00000366304 SPINK5Q9NQ38 1064 aaPredicted RBP14.14□□□□□ -0.15
HMGB1P39-201ENST00000366304 CCDC18Q5T9S5 1454 aa14.13□□□□□ -0.15
HMGB1P39-201ENST00000366304 TNRQ92752 1358 aa14.13□□□□□ -0.15
HMGB1P39-201ENST00000366304 MYCNP04198 464 aaPredicted RBP14.13□□□□□ -0.15
HMGB1P39-201ENST00000366304 STRCP1A6NGW2 1772 aa14.13□□□□□ -0.15
HMGB1P39-201ENST00000366304 ZNF644Q9H582 1327 aaPredicted RBP14.13□□□□□ -0.15
HMGB1P39-201ENST00000366304 LRRC7Q96NW7 1537 aa14.12□□□□□ -0.15
HMGB1P39-201ENST00000366304 NPHP4O75161 1426 aaPredicted RBP14.11□□□□□ -0.15
HMGB1P39-201ENST00000366304 MED14O60244 1454 aa14.11□□□□□ -0.15
HMGB1P39-201ENST00000366304 CAPN15O75808 1086 aa14.1□□□□□ -0.15
HMGB1P39-201ENST00000366304 ANKLE2Q86XL3 938 aa14.1□□□□□ -0.15
HMGB1P39-201ENST00000366304 POTEAQ6S8J7 498 aa14.09□□□□□ -0.15
HMGB1P39-201ENST00000366304 CFDP1Q9UEE9 299 aaPredicted RBP14.09□□□□□ -0.15
HMGB1P39-201ENST00000366304 PZPP20742 1482 aa14.09□□□□□ -0.15
HMGB1P39-201ENST00000366304 MBD5Q9P267 1494 aa14.08□□□□□ -0.16
HMGB1P39-201ENST00000366304 SAMD1Q6SPF0 538 aaPredicted RBP14.07□□□□□ -0.16
HMGB1P39-201ENST00000366304 DEPDC5O75140 1603 aa14.07□□□□□ -0.16
HMGB1P39-201ENST00000366304 ADGBQ8N7X0 1667 aa14.07□□□□□ -0.16
HMGB1P39-201ENST00000366304 DHX29Q7Z478 1369 aaKnown RBP14.07□□□□□ -0.16
HMGB1P39-201ENST00000366304 MIA2Q96PC5 1412 aa14.07□□□□□ -0.16
HMGB1P39-201ENST00000366304 PLEKHH2Q8IVE3 1493 aa14.06□□□□□ -0.16
HMGB1P39-201ENST00000366304 THEMISQ8N1K5 641 aaPredicted RBP14.05□□□□□ -0.16
HMGB1P39-201ENST00000366304 FYCO1Q9BQS8 1478 aa14.05□□□□□ -0.16
HMGB1P39-201ENST00000366304 UGGT1Q9NYU2 1555 aa14.05□□□□□ -0.16
HMGB1P39-201ENST00000366304 RNF17Q9BXT8 1623 aaKnown RBP14.04□□□□□ -0.16
HMGB1P39-201ENST00000366304 KIF3BO15066 747 aa14.04□□□□□ -0.16
HMGB1P39-201ENST00000366304 CCNB3Q8WWL7 1395 aa14.04□□□□□ -0.16
HMGB1P39-201ENST00000366304 KDM5DQ9BY66 1539 aa14.04□□□□□ -0.16
HMGB1P39-201ENST00000366304 IQGAP1P46940 1657 aa14.04□□□□□ -0.16
HMGB1P39-201ENST00000366304 NLRP1Q9C000 1473 aa14.02□□□□□ -0.16
HMGB1P39-201ENST00000366304 APLP2Q06481 763 aa14.02□□□□□ -0.17
HMGB1P39-201ENST00000366304 RTEL1-TNFRSF6BF6WH68 1400 aa14.01□□□□□ -0.17
HMGB1P39-201ENST00000366304 TIAM1Q13009 1591 aa14□□□□□ -0.17
HMGB1P39-201ENST00000366304 FAM135AQ9P2D6 1515 aa14□□□□□ -0.17
HMGB1P39-201ENST00000366304 WASHC2CQ9Y4E1 1318 aa14□□□□□ -0.17
HMGB1P39-201ENST00000366304 SYNMO15061 1565 aa14□□□□□ -0.17
HMGB1P39-201ENST00000366304 ZC3H13Q5T200 1668 aaKnown RBP13.99□□□□□ -0.17
HMGB1P39-201ENST00000366304 SETD1AO15047 1707 aaKnown RBP13.98□□□□□ -0.17
HMGB1P39-201ENST00000366304 XIRP1Q702N8 1843 aaKnown RBP13.97□□□□□ -0.17
HMGB1P39-201ENST00000366304 LTKP29376 864 aa13.96□□□□□ -0.17
HMGB1P39-201ENST00000366304 NCOA2Q15596 1464 aa13.95□□□□□ -0.18
HMGB1P39-201ENST00000366304 FAM135BQ49AJ0 1406 aa13.94□□□□□ -0.18
HMGB1P39-201ENST00000366304 ABCC3O15438 1527 aa13.93□□□□□ -0.18
HMGB1P39-201ENST00000366304 MTUS2Q5JR59 1369 aa13.93□□□□□ -0.18
HMGB1P39-201ENST00000366304 ERVK-7P63135 1459 aa13.93□□□□□ -0.18
HMGB1P39-201ENST00000366304 CCDC141Q6ZP82 1450 aa13.92□□□□□ -0.18
HMGB1P39-201ENST00000366304 SCAF11Q99590 1463 aaKnown RBP13.92□□□□□ -0.18
HMGB1P39-201ENST00000366304 ARHGAP23Q9P227 1491 aa13.91□□□□□ -0.18
HMGB1P39-201ENST00000366304 UBR1Q8IWV7 1749 aa13.9□□□□□ -0.18
HMGB1P39-201ENST00000366304 DSG3P32926 999 aa13.9□□□□□ -0.18
HMGB1P39-201ENST00000366304 RBM33Q96EV2 1170 aaKnown RBP13.9□□□□□ -0.18
HMGB1P39-201ENST00000366304 ZNF219Q9P2Y4 722 aaPredicted RBP13.9□□□□□ -0.18
HMGB1P39-201ENST00000366304 CAMSAP2Q08AD1 1489 aa13.89□□□□□ -0.19
HMGB1P39-201ENST00000366304 TMEM94Q12767 1356 aa13.89□□□□□ -0.19
HMGB1P39-201ENST00000366304 MROH1Q8NDA8 1641 aa13.89□□□□□ -0.19
HMGB1P39-201ENST00000366304 TXNDC2Q86VQ3 553 aa13.88□□□□□ -0.19
HMGB1P39-201ENST00000366304 SLIT1O75093 1534 aa13.88□□□□□ -0.19
HMGB1P39-201ENST00000366304 MAP3K1Q13233 1512 aa13.88□□□□□ -0.19
HMGB1P39-201ENST00000366304 CEP162Q5TB80 1403 aa13.88□□□□□ -0.19
HMGB1P39-201ENST00000366304 ROBO1Q9Y6N7 1651 aa13.88□□□□□ -0.19
HMGB1P39-201ENST00000366304 UPF1Q92900 1129 aaKnown RBP eCLIP13.87□□□□□ -0.19
HMGB1P39-201ENST00000366304 EHBP1L1Q8N3D4 1523 aa13.85□□□□□ -0.19
HMGB1P39-201ENST00000366304 SRCAPQ6ZRS2 3230 aa13.83□□□□□ -0.19
HMGB1P39-201ENST00000366304 LRP6O75581 1613 aa13.83□□□□□ -0.2
HMGB1P39-201ENST00000366304 ATF5Q9Y2D1 282 aaPredicted RBP13.83□□□□□ -0.2
HMGB1P39-201ENST00000366304 ABCB7O75027 752 aa13.82□□□□□ -0.2
HMGB1P39-201ENST00000366304 ARHGEF5Q12774 1597 aa13.82□□□□□ -0.2
HMGB1P39-201ENST00000366304 CEP152O94986 1710 aa13.81□□□□□ -0.2
HMGB1P39-201ENST00000366304 TMEM2Q9UHN6 1383 aa13.81□□□□□ -0.2
HMGB1P39-201ENST00000366304 TET3O43151 1660 aa13.8□□□□□ -0.2
HMGB1P39-201ENST00000366304 KCNA6P17658 529 aa13.8□□□□□ -0.2
HMGB1P39-201ENST00000366304 RSPH4AQ5TD94 716 aa13.8□□□□□ -0.2
HMGB1P39-201ENST00000366304 PROSER2Q86WR7 435 aaPredicted RBP13.8□□□□□ -0.2
HMGB1P39-201ENST00000366304 SLC26A8Q96RN1 970 aa13.8□□□□□ -0.2
HMGB1P39-201ENST00000366304 TRIM52Q96A61 297 aa13.79□□□□□ -0.2
HMGB1P39-201ENST00000366304 PIK3C2BO00750 1634 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms