RNA–Protein interactions for RNA: ENST00000361115.4

CCL28-201, Transcript of C-C motif chemokine ligand 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCL28, Length 3,126 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCL28-201ENST00000361115 RSPH4AQ5TD94 716 aa11.8□□□□□ -0.52
CCL28-201ENST00000361115 PZPP20742 1482 aa11.79□□□□□ -0.52
CCL28-201ENST00000361115 DNMT1P26358 1616 aaKnown RBP11.78□□□□□ -0.52
CCL28-201ENST00000361115 GTF3C3Q9Y5Q9 886 aa11.78□□□□□ -0.52
CCL28-201ENST00000361115 CAMSAP2Q08AD1 1489 aa11.78□□□□□ -0.52
CCL28-201ENST00000361115 MED1Q15648 1581 aaPredicted RBP11.76□□□□□ -0.53
CCL28-201ENST00000361115 ERICH6Q7L0X2 663 aa11.75□□□□□ -0.53
CCL28-201ENST00000361115 SYCP2Q9BX26 1530 aa11.74□□□□□ -0.53
CCL28-201ENST00000361115 ZMYM3Q14202 1370 aa11.74□□□□□ -0.53
CCL28-201ENST00000361115 NEURL4Q96JN8 1562 aa11.74□□□□□ -0.53
CCL28-201ENST00000361115 APLP2Q06481 763 aa11.74□□□□□ -0.53
CCL28-201ENST00000361115 GPATCH8Q9UKJ3 1502 aaKnown RBP11.74□□□□□ -0.53
CCL28-201ENST00000361115 CEP162Q5TB80 1403 aa11.73□□□□□ -0.53
CCL28-201ENST00000361115 LRRC9Q6ZRR7 1453 aa11.73□□□□□ -0.53
CCL28-201ENST00000361115 VWDEQ8N2E2 1590 aa11.73□□□□□ -0.53
CCL28-201ENST00000361115 HSPA2P54652 639 aa11.72□□□□□ -0.53
CCL28-201ENST00000361115 IQGAP1P46940 1657 aa11.72□□□□□ -0.53
CCL28-201ENST00000361115 SHANK2Q9UPX8 1470 aa11.71□□□□□ -0.53
CCL28-201ENST00000361115 P3H3Q8IVL6 736 aa11.71□□□□□ -0.54
CCL28-201ENST00000361115 MAP3K1Q13233 1512 aa11.7□□□□□ -0.54
CCL28-201ENST00000361115 SPAG9O60271 1321 aaKnown RBP11.7□□□□□ -0.54
CCL28-201ENST00000361115 DHX29Q7Z478 1369 aaKnown RBP11.69□□□□□ -0.54
CCL28-201ENST00000361115 NCOA2Q15596 1464 aa11.69□□□□□ -0.54
CCL28-201ENST00000361115 CCDC141Q6ZP82 1450 aa11.69□□□□□ -0.54
CCL28-201ENST00000361115 TIAM1Q13009 1591 aa11.69□□□□□ -0.54
CCL28-201ENST00000361115 TOM1O60784 492 aa11.67□□□□□ -0.54
CCL28-201ENST00000361115 SLIT1O75093 1534 aa11.66□□□□□ -0.54
CCL28-201ENST00000361115 TNRQ92752 1358 aa11.66□□□□□ -0.54
CCL28-201ENST00000361115 ARHGAP31Q2M1Z3 1444 aa11.66□□□□□ -0.54
CCL28-201ENST00000361115 ABCC3O15438 1527 aa11.66□□□□□ -0.54
CCL28-201ENST00000361115 CCNB3Q8WWL7 1395 aa11.65□□□□□ -0.54
CCL28-201ENST00000361115 MBD5Q9P267 1494 aa11.65□□□□□ -0.54
CCL28-201ENST00000361115 CENPBP07199 599 aaPredicted RBP11.64□□□□□ -0.55
CCL28-201ENST00000361115 ARHGAP23Q9P227 1491 aa11.63□□□□□ -0.55
CCL28-201ENST00000361115 NPHP4O75161 1426 aaPredicted RBP11.63□□□□□ -0.55
CCL28-201ENST00000361115 UGGT1Q9NYU2 1555 aa11.63□□□□□ -0.55
CCL28-201ENST00000361115 NWD1Q149M9 1564 aa11.63□□□□□ -0.55
CCL28-201ENST00000361115 NCOA3Q9Y6Q9 1424 aa11.62□□□□□ -0.55
CCL28-201ENST00000361115 PTPN23Q9H3S7 1636 aa11.62□□□□□ -0.55
CCL28-201ENST00000361115 AFAP1Q8N556 730 aa11.62□□□□□ -0.55
CCL28-201ENST00000361115 LMTK2Q8IWU2 1503 aa11.62□□□□□ -0.55
CCL28-201ENST00000361115 MLECQ14165 292 aa11.61□□□□□ -0.55
CCL28-201ENST00000361115 THEMISQ8N1K5 641 aaPredicted RBP11.61□□□□□ -0.55
CCL28-201ENST00000361115 UBR1Q8IWV7 1749 aa11.61□□□□□ -0.55
CCL28-201ENST00000361115 PRDM15P57071 1507 aaPredicted RBP11.6□□□□□ -0.55
CCL28-201ENST00000361115 MIA2Q96PC5 1412 aa11.6□□□□□ -0.55
CCL28-201ENST00000361115 NKTRP30414 1462 aaKnown RBP11.6□□□□□ -0.55
CCL28-201ENST00000361115 DIEXFQ68CQ4 756 aaKnown RBP11.6□□□□□ -0.55
CCL28-201ENST00000361115 ILDR2Q71H61 639 aa11.6□□□□□ -0.55
CCL28-201ENST00000361115 DUOX2Q9NRD8 1548 aa11.59□□□□□ -0.55
CCL28-201ENST00000361115 ARID3CA6NKF2 412 aa11.58□□□□□ -0.56
CCL28-201ENST00000361115 ANKLE2Q86XL3 938 aa11.58□□□□□ -0.56
CCL28-201ENST00000361115 CROCC2H7BZ55 1655 aa11.58□□□□□ -0.56
CCL28-201ENST00000361115 ALKQ9UM73 1620 aa11.58□□□□□ -0.56
CCL28-201ENST00000361115 UBAP1LF5GYI3 381 aa11.58□□□□□ -0.56
CCL28-201ENST00000361115 DIP2AQ14689 1571 aa11.57□□□□□ -0.56
CCL28-201ENST00000361115 ERBINQ96RT1 1412 aa11.57□□□□□ -0.56
CCL28-201ENST00000361115 ERVK-7P63135 1459 aa11.57□□□□□ -0.56
CCL28-201ENST00000361115 FAM135BQ49AJ0 1406 aa11.57□□□□□ -0.56
CCL28-201ENST00000361115 CEBPAP49715 358 aaPredicted RBP11.56□□□□□ -0.56
CCL28-201ENST00000361115 SLC4A1APQ9BWU0 796 aaKnown RBP11.56□□□□□ -0.56
CCL28-201ENST00000361115 LRRC7Q96NW7 1537 aa11.56□□□□□ -0.56
CCL28-201ENST00000361115 MYT1LQ9UL68 1186 aa11.55□□□□□ -0.56
CCL28-201ENST00000361115 MTUS2Q5JR59 1369 aa11.55□□□□□ -0.56
CCL28-201ENST00000361115 CFDP1Q9UEE9 299 aaPredicted RBP11.55□□□□□ -0.56
CCL28-201ENST00000361115 SCAF11Q99590 1463 aaKnown RBP11.54□□□□□ -0.56
CCL28-201ENST00000361115 CCER1Q8TC90 406 aaPredicted RBP11.53□□□□□ -0.56
CCL28-201ENST00000361115 MROH1Q8NDA8 1641 aa11.53□□□□□ -0.56
CCL28-201ENST00000361115 UBTFP17480 764 aaKnown RBP11.53□□□□□ -0.56
CCL28-201ENST00000361115 CDK12Q9NYV4 1490 aaPredicted RBP11.53□□□□□ -0.56
CCL28-201ENST00000361115 RPRD2Q5VT52 1461 aaKnown RBP11.52□□□□□ -0.56
CCL28-201ENST00000361115 DAXXQ9UER7 740 aaPredicted RBP11.52□□□□□ -0.56
CCL28-201ENST00000361115 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP11.52□□□□□ -0.57
CCL28-201ENST00000361115 ZNF335Q9H4Z2 1342 aaPredicted RBP11.52□□□□□ -0.57
CCL28-201ENST00000361115 NCKAP5LQ9HCH0 1330 aa11.52□□□□□ -0.57
CCL28-201ENST00000361115 FGD6Q6ZV73 1430 aa11.51□□□□□ -0.57
CCL28-201ENST00000361115 XIRP1Q702N8 1843 aaKnown RBP11.5□□□□□ -0.57
CCL28-201ENST00000361115 STRCP1A6NGW2 1772 aa11.49□□□□□ -0.57
CCL28-201ENST00000361115 SHPRHQ149N8 1683 aa11.48□□□□□ -0.57
CCL28-201ENST00000361115 ADGRB3O60242 1522 aa11.48□□□□□ -0.57
CCL28-201ENST00000361115 MYOM3Q5VTT5 1437 aa11.48□□□□□ -0.57
CCL28-201ENST00000361115 SETD1AO15047 1707 aaKnown RBP11.47□□□□□ -0.57
CCL28-201ENST00000361115 CEP152O94986 1710 aa11.47□□□□□ -0.57
CCL28-201ENST00000361115 AHDC1Q5TGY3 1603 aaPredicted RBP11.46□□□□□ -0.57
CCL28-201ENST00000361115 PIK3R4Q99570 1358 aa11.46□□□□□ -0.57
CCL28-201ENST00000361115 EFCAB6Q5THR3 1501 aa11.45□□□□□ -0.58
CCL28-201ENST00000361115 TET3O43151 1660 aa11.44□□□□□ -0.58
CCL28-201ENST00000361115 YTHDC1Q96MU7 727 aaKnown RBP11.44□□□□□ -0.58
CCL28-201ENST00000361115 GCC2Q8IWJ2 1684 aa11.44□□□□□ -0.58
CCL28-201ENST00000361115 KANK1Q14678 1352 aa11.44□□□□□ -0.58
CCL28-201ENST00000361115 DCCP43146 1447 aa11.43□□□□□ -0.58
CCL28-201ENST00000361115 FOXD1Q16676 465 aa11.43□□□□□ -0.58
CCL28-201ENST00000361115 ZBTB22O15209 634 aa11.43□□□□□ -0.58
CCL28-201ENST00000361115 HSPA1LP34931 641 aa11.43□□□□□ -0.58
CCL28-201ENST00000361115 WASHC2CQ9Y4E1 1318 aa11.42□□□□□ -0.58
CCL28-201ENST00000361115 PIK3C2BO00750 1634 aa11.42□□□□□ -0.58
CCL28-201ENST00000361115 TSPY4P0CV99 314 aa11.42□□□□□ -0.58
CCL28-201ENST00000361115 TSPY10P0CW01 314 aa11.42□□□□□ -0.58
CCL28-201ENST00000361115 ADGRL2O95490 1459 aa11.42□□□□□ -0.58
CCL28-201ENST00000361115 HNRNPMP52272 730 aaKnown RBP eCLIP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms