RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 FBXW7Q969H0 707 aa19.53■□□□□ 0.72
PTPRF-201ENST00000359947 FOXD4L1Q9NU39 408 aa19.52■□□□□ 0.72
PTPRF-201ENST00000359947 MINK1Q8N4C8 1332 aaPredicted RBP19.52■□□□□ 0.72
PTPRF-201ENST00000359947 RAB3GAP2Q9H2M9 1393 aa19.52■□□□□ 0.72
PTPRF-201ENST00000359947 MARCH6O60337 910 aa19.52■□□□□ 0.71
PTPRF-201ENST00000359947 GZF1Q9H116 711 aaPredicted RBP19.52■□□□□ 0.71
PTPRF-201ENST00000359947 SMARCA2P51531 1590 aa19.52■□□□□ 0.71
PTPRF-201ENST00000359947 NECTIN2Q92692 538 aa19.51■□□□□ 0.71
PTPRF-201ENST00000359947 RALBP1Q15311 655 aa19.5■□□□□ 0.71
PTPRF-201ENST00000359947 PSME1Q06323 249 aa19.5■□□□□ 0.71
PTPRF-201ENST00000359947 CHAF1AQ13111 956 aaPredicted RBP19.5■□□□□ 0.71
PTPRF-201ENST00000359947 CFAP44Q96MT7 982 aa19.5■□□□□ 0.71
PTPRF-201ENST00000359947 SLKQ9H2G2 1235 aaPredicted RBP19.5■□□□□ 0.71
PTPRF-201ENST00000359947 CHMP4AQ9BY43 222 aa19.5■□□□□ 0.71
PTPRF-201ENST00000359947 OSCARQ8IYS5 282 aa19.5■□□□□ 0.71
PTPRF-201ENST00000359947 EIF2S2P20042 333 aaKnown RBP19.49■□□□□ 0.71
PTPRF-201ENST00000359947 NOC3LQ8WTT2 800 aaKnown RBP19.49■□□□□ 0.71
PTPRF-201ENST00000359947 MROH2BQ7Z745 1585 aa19.49■□□□□ 0.71
PTPRF-201ENST00000359947 HMMRO75330 724 aa19.49■□□□□ 0.71
PTPRF-201ENST00000359947 COG3Q96JB2 828 aa19.49■□□□□ 0.71
PTPRF-201ENST00000359947 L3MBTL2Q969R5 705 aa19.49■□□□□ 0.71
PTPRF-201ENST00000359947 FAM69CQ0P6D2 419 aa19.48■□□□□ 0.71
PTPRF-201ENST00000359947 MSNP26038 577 aaKnown RBP19.47■□□□□ 0.71
PTPRF-201ENST00000359947 VPS8Q8N3P4 1428 aa19.46■□□□□ 0.71
PTPRF-201ENST00000359947 FOXD4L5Q5VV16 416 aaPredicted RBP19.46■□□□□ 0.71
PTPRF-201ENST00000359947 FOXD4L4Q8WXT5 416 aaPredicted RBP19.46■□□□□ 0.71
PTPRF-201ENST00000359947 TTC5Q8N0Z6 440 aa19.46■□□□□ 0.71
PTPRF-201ENST00000359947 WWC1Q8IX03 1113 aa19.45■□□□□ 0.7
PTPRF-201ENST00000359947 LMOD3Q0VAK6 560 aa19.45■□□□□ 0.7
PTPRF-201ENST00000359947 BCL2L13Q9BXK5 485 aa19.45■□□□□ 0.7
PTPRF-201ENST00000359947 TEFQ10587 303 aa19.44■□□□□ 0.7
PTPRF-201ENST00000359947 HDAC5Q9UQL6 1122 aa19.44■□□□□ 0.7
PTPRF-201ENST00000359947 CCDC18Q5T9S5 1454 aa19.43■□□□□ 0.7
PTPRF-201ENST00000359947 RILPL2Q969X0 211 aa19.43■□□□□ 0.7
PTPRF-201ENST00000359947 TRIM34Q9BYJ4 488 aa19.43■□□□□ 0.7
PTPRF-201ENST00000359947 PMFBP1Q8TBY8 1022 aa19.41■□□□□ 0.7
PTPRF-201ENST00000359947 NUTM2GQ5VZR2 741 aa19.41■□□□□ 0.7
PTPRF-201ENST00000359947 TIMELESSQ9UNS1 1208 aa19.41■□□□□ 0.7
PTPRF-201ENST00000359947 CENPJQ9HC77 1338 aaPredicted RBP19.41■□□□□ 0.7
PTPRF-201ENST00000359947 SAMD1Q6SPF0 538 aaPredicted RBP19.41■□□□□ 0.7
PTPRF-201ENST00000359947 PANK3Q9H999 370 aa19.4■□□□□ 0.7
PTPRF-201ENST00000359947 HTATSF1O43719 755 aaKnown RBP19.4■□□□□ 0.7
PTPRF-201ENST00000359947 CCER2I3L3R5 266 aa19.4■□□□□ 0.7
PTPRF-201ENST00000359947 RSPH4AQ5TD94 716 aa19.39■□□□□ 0.7
PTPRF-201ENST00000359947 WIZO95785 1651 aa19.39■□□□□ 0.69
PTPRF-201ENST00000359947 L1TD1Q5T7N2 865 aaKnown RBP19.39■□□□□ 0.69
PTPRF-201ENST00000359947 VGFO15240 615 aaPredicted RBP19.39■□□□□ 0.69
PTPRF-201ENST00000359947 CTDP1Q9Y5B0 961 aaPredicted RBP19.38■□□□□ 0.69
PTPRF-201ENST00000359947 ATF3P18847 181 aa19.38■□□□□ 0.69
PTPRF-201ENST00000359947 VPS37DQ86XT2 251 aa19.38■□□□□ 0.69
PTPRF-201ENST00000359947 ST20-MTHFSA0A0A6YYL1 179 aa19.38■□□□□ 0.69
PTPRF-201ENST00000359947 ARID3AQ99856 593 aa19.37■□□□□ 0.69
PTPRF-201ENST00000359947 GBP4Q96PP9 640 aa19.37■□□□□ 0.69
PTPRF-201ENST00000359947 CCDC144AA2RUR9 1427 aa19.37■□□□□ 0.69
PTPRF-201ENST00000359947 PES1O00541 588 aaKnown RBP19.37■□□□□ 0.69
PTPRF-201ENST00000359947 PTPRGP23470 1445 aa19.37■□□□□ 0.69
PTPRF-201ENST00000359947 TCERG1O14776 1098 aaKnown RBP19.37■□□□□ 0.69
PTPRF-201ENST00000359947 USP35Q9P2H5 1018 aa19.36■□□□□ 0.69
PTPRF-201ENST00000359947 EVC2Q86UK5 1308 aa19.36■□□□□ 0.69
PTPRF-201ENST00000359947 CADPSQ9ULU8 1353 aa19.35■□□□□ 0.69
PTPRF-201ENST00000359947 NOL10Q9BSC4 688 aaKnown RBP19.35■□□□□ 0.69
PTPRF-201ENST00000359947 C9orf78Q9NZ63 289 aaPredicted RBP19.35■□□□□ 0.69
PTPRF-201ENST00000359947 TCEAL9Q9UHQ7 104 aa19.35■□□□□ 0.69
PTPRF-201ENST00000359947 RAPGEF2Q9Y4G8 1499 aa19.34■□□□□ 0.69
PTPRF-201ENST00000359947 FOXD4L6Q3SYB3 417 aaPredicted RBP19.34■□□□□ 0.69
PTPRF-201ENST00000359947 FOXD4L3Q6VB84 417 aaPredicted RBP19.34■□□□□ 0.69
PTPRF-201ENST00000359947 TPM4P67936 248 aa19.34■□□□□ 0.69
PTPRF-201ENST00000359947 SF3A1Q15459 793 aaKnown RBP19.33■□□□□ 0.69
PTPRF-201ENST00000359947 NEXNQ0ZGT2 675 aa19.33■□□□□ 0.68
PTPRF-201ENST00000359947 CCDC34Q96HJ3 373 aa19.33■□□□□ 0.68
PTPRF-201ENST00000359947 CWC22Q9HCG8 908 aaKnown RBP19.33■□□□□ 0.68
PTPRF-201ENST00000359947 APPP05067 770 aa19.32■□□□□ 0.68
PTPRF-201ENST00000359947 PPP1R1BQ9UD71 204 aaPredicted RBP19.32■□□□□ 0.68
PTPRF-201ENST00000359947 CGNL1Q0VF96 1302 aa19.32■□□□□ 0.68
PTPRF-201ENST00000359947 KIF16BQ96L93 1317 aa19.32■□□□□ 0.68
PTPRF-201ENST00000359947 ANKRD45Q5TZF3 282 aa19.31■□□□□ 0.68
PTPRF-201ENST00000359947 DHX16O60231 1041 aaKnown RBP19.31■□□□□ 0.68
PTPRF-201ENST00000359947 AKAP17AQ02040 695 aaKnown RBP19.31■□□□□ 0.68
PTPRF-201ENST00000359947 NLRP13Q86W25 1043 aa19.3■□□□□ 0.68
PTPRF-201ENST00000359947 H3BQV1 296 aa19.3■□□□□ 0.68
PTPRF-201ENST00000359947 IFFO2Q5TF58 517 aa19.3■□□□□ 0.68
PTPRF-201ENST00000359947 AMOTL1Q8IY63 956 aa19.29■□□□□ 0.68
PTPRF-201ENST00000359947 PRDM2Q13029 1718 aa19.29■□□□□ 0.68
PTPRF-201ENST00000359947 A0A0U1RQG5 324 aaPredicted RBP19.28■□□□□ 0.68
PTPRF-201ENST00000359947 CEP89Q96ST8 783 aa19.27■□□□□ 0.68
PTPRF-201ENST00000359947 SYAP1Q96A49 352 aaPredicted RBP19.27■□□□□ 0.68
PTPRF-201ENST00000359947 PLIN1O60240 522 aa19.27■□□□□ 0.68
PTPRF-201ENST00000359947 NLRP2Q9NX02 1062 aa19.26■□□□□ 0.67
PTPRF-201ENST00000359947 FAM177BA6PVY3 158 aa19.26■□□□□ 0.67
PTPRF-201ENST00000359947 AIMP1Q12904 312 aaKnown RBP19.26■□□□□ 0.67
PTPRF-201ENST00000359947 FAM184AQ8NB25 1140 aa19.25■□□□□ 0.67
PTPRF-201ENST00000359947 UACAQ9BZF9 1416 aa19.25■□□□□ 0.67
PTPRF-201ENST00000359947 TPD52L1Q16890 204 aaPredicted RBP19.25■□□□□ 0.67
PTPRF-201ENST00000359947 MCTP1Q6DN14 999 aa19.25■□□□□ 0.67
PTPRF-201ENST00000359947 RBM33Q96EV2 1170 aaKnown RBP19.24■□□□□ 0.67
PTPRF-201ENST00000359947 FYB1O15117 783 aa19.24■□□□□ 0.67
PTPRF-201ENST00000359947 HMOX1P09601 288 aa19.24■□□□□ 0.67
PTPRF-201ENST00000359947 CNKSR2Q8WXI2 1034 aa19.24■□□□□ 0.67
PTPRF-201ENST00000359947 SYNE3Q6ZMZ3 975 aa19.24■□□□□ 0.67
PTPRF-201ENST00000359947 KRI1Q8N9T8 703 aaKnown RBP19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms