RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 FAM135AQ9P2D6 1515 aa27.2■■□□□ 1.94
CLN3-204ENST00000357857 ZMYM4Q5VZL5 1548 aa27.19■■□□□ 1.94
CLN3-204ENST00000357857 DEPDC5O75140 1603 aa27.18■■□□□ 1.94
CLN3-204ENST00000357857 A2MP01023 1474 aa27.18■■□□□ 1.94
CLN3-204ENST00000357857 NEUROD1Q13562 356 aa27.18■■□□□ 1.94
CLN3-204ENST00000357857 FOXD1Q16676 465 aa27.16■■□□□ 1.94
CLN3-204ENST00000357857 DIP2CQ9Y2E4 1556 aa27.15■■□□□ 1.94
CLN3-204ENST00000357857 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.15■■□□□ 1.94
CLN3-204ENST00000357857 PKD2Q13563 968 aa27.14■■□□□ 1.94
CLN3-204ENST00000357857 ANKRD30BQ9BXX2 1392 aa27.14■■□□□ 1.94
CLN3-204ENST00000357857 TIMELESSQ9UNS1 1208 aa27.1■■□□□ 1.93
CLN3-204ENST00000357857 BCORL1Q5H9F3 1711 aa27.1■■□□□ 1.93
CLN3-204ENST00000357857 KIF3BO15066 747 aa27.1■■□□□ 1.93
CLN3-204ENST00000357857 RNF17Q9BXT8 1623 aaKnown RBP27.08■■□□□ 1.93
CLN3-204ENST00000357857 YEATS2Q9ULM3 1422 aa27.08■■□□□ 1.93
CLN3-204ENST00000357857 PRDM15P57071 1507 aaPredicted RBP27.07■■□□□ 1.92
CLN3-204ENST00000357857 MROH1Q8NDA8 1641 aa27.07■■□□□ 1.92
CLN3-204ENST00000357857 COL17A1Q9UMD9 1497 aaPredicted RBP27.06■■□□□ 1.92
CLN3-204ENST00000357857 VWDEQ8N2E2 1590 aa27.05■■□□□ 1.92
CLN3-204ENST00000357857 KANK1Q14678 1352 aa27.04■■□□□ 1.92
CLN3-204ENST00000357857 TONSLQ96HA7 1378 aa27.04■■□□□ 1.92
CLN3-204ENST00000357857 RPRD2Q5VT52 1461 aaKnown RBP27.01■■□□□ 1.91
CLN3-204ENST00000357857 TET3O43151 1660 aa27.01■■□□□ 1.91
CLN3-204ENST00000357857 ATP10AO60312 1499 aa26.99■■□□□ 1.91
CLN3-204ENST00000357857 E9PCH4 1651 aa26.97■■□□□ 1.91
CLN3-204ENST00000357857 REREQ9P2R6 1566 aa26.97■■□□□ 1.91
CLN3-204ENST00000357857 ARHGEF40Q8TER5 1519 aa26.96■■□□□ 1.91
CLN3-204ENST00000357857 CEP152O94986 1710 aa26.96■■□□□ 1.91
CLN3-204ENST00000357857 LMTK2Q8IWU2 1503 aa26.92■■□□□ 1.9
CLN3-204ENST00000357857 PPP1R15AO75807 674 aaPredicted RBP26.9■■□□□ 1.9
CLN3-204ENST00000357857 GGT6Q6P531 493 aa26.9■■□□□ 1.9
CLN3-204ENST00000357857 EFCAB6Q5THR3 1501 aa26.89■■□□□ 1.89
CLN3-204ENST00000357857 PLA2R1Q13018 1463 aa26.89■■□□□ 1.89
CLN3-204ENST00000357857 SPHKAPQ2M3C7 1700 aa26.88■■□□□ 1.89
CLN3-204ENST00000357857 AGLP35573 1532 aa26.88■■□□□ 1.89
CLN3-204ENST00000357857 ABCC3O15438 1527 aa26.86■■□□□ 1.89
CLN3-204ENST00000357857 CCDC144AA2RUR9 1427 aa26.86■■□□□ 1.89
CLN3-204ENST00000357857 ZC3H13Q5T200 1668 aaKnown RBP26.85■■□□□ 1.89
CLN3-204ENST00000357857 L3MBTL2Q969R5 705 aa26.84■■□□□ 1.89
CLN3-204ENST00000357857 SIGLEC1Q9BZZ2 1709 aa26.83■■□□□ 1.89
CLN3-204ENST00000357857 CAMSAP1Q5T5Y3 1602 aa26.82■■□□□ 1.88
CLN3-204ENST00000357857 TRPM2O94759 1503 aa26.82■■□□□ 1.88
CLN3-204ENST00000357857 PTPRTO14522 1441 aa26.81■■□□□ 1.88
CLN3-204ENST00000357857 WASHC2CQ9Y4E1 1318 aa26.81■■□□□ 1.88
CLN3-204ENST00000357857 CFAP65Q6ZU64 1925 aaKnown RBP26.74■■□□□ 1.87
CLN3-204ENST00000357857 CLTCL1P53675 1640 aa26.74■■□□□ 1.87
CLN3-204ENST00000357857 NPATQ14207 1427 aa26.74■■□□□ 1.87
CLN3-204ENST00000357857 ZNF316A6NFI3 1004 aaPredicted RBP26.73■■□□□ 1.87
CLN3-204ENST00000357857 PPP6R1Q9UPN7 881 aa26.71■■□□□ 1.87
CLN3-204ENST00000357857 ARHGAP31Q2M1Z3 1444 aa26.7■■□□□ 1.86
CLN3-204ENST00000357857 CLTCQ00610 1675 aaKnown RBP26.67■■□□□ 1.86
CLN3-204ENST00000357857 KIF1BO60333 1816 aa26.66■■□□□ 1.86
CLN3-204ENST00000357857 CNTLNQ9NXG0 1405 aa26.65■■□□□ 1.86
CLN3-204ENST00000357857 SPATA31E1Q6ZUB1 1445 aa26.64■■□□□ 1.85
CLN3-204ENST00000357857 UGGT1Q9NYU2 1555 aa26.63■■□□□ 1.85
CLN3-204ENST00000357857 MLECQ14165 292 aa26.63■■□□□ 1.85
CLN3-204ENST00000357857 NBPF8Q3BBV2 869 aa26.62■■□□□ 1.85
CLN3-204ENST00000357857 NOS1P29475 1434 aa26.62■■□□□ 1.85
CLN3-204ENST00000357857 RGL3Q3MIN7 710 aa26.62■■□□□ 1.85
CLN3-204ENST00000357857 ARID4BQ4LE39 1312 aaPredicted RBP26.61■■□□□ 1.85
CLN3-204ENST00000357857 NEURL4Q96JN8 1562 aa26.61■■□□□ 1.85
CLN3-204ENST00000357857 PREX1Q8TCU6 1659 aa26.61■■□□□ 1.85
CLN3-204ENST00000357857 UHRF1BP1Q6BDS2 1440 aa26.61■■□□□ 1.85
CLN3-204ENST00000357857 DCAF11Q8TEB1 546 aa26.6■■□□□ 1.85
CLN3-204ENST00000357857 SYNMO15061 1565 aa26.58■■□□□ 1.85
CLN3-204ENST00000357857 KDM2AQ9Y2K7 1162 aa26.57■■□□□ 1.84
CLN3-204ENST00000357857 PIK3C2BO00750 1634 aa26.57■■□□□ 1.84
CLN3-204ENST00000357857 MROH2AA6NES4 1674 aa26.55■■□□□ 1.84
CLN3-204ENST00000357857 ZNF326Q5BKZ1 582 aaKnown RBP26.55■■□□□ 1.84
CLN3-204ENST00000357857 ESF1Q9H501 851 aaKnown RBP26.53■■□□□ 1.84
CLN3-204ENST00000357857 ADGRB3O60242 1522 aa26.52■■□□□ 1.84
CLN3-204ENST00000357857 ERVK-7P63135 1459 aa26.51■■□□□ 1.84
CLN3-204ENST00000357857 RALGAPBQ86X10 1494 aa26.51■■□□□ 1.83
CLN3-204ENST00000357857 PRAG1Q86YV5 1406 aa26.51■■□□□ 1.83
CLN3-204ENST00000357857 IFT172Q9UG01 1749 aa26.49■■□□□ 1.83
CLN3-204ENST00000357857 TRPM1Q7Z4N2 1603 aa26.48■■□□□ 1.83
CLN3-204ENST00000357857 SPATA31D1Q6ZQQ2 1576 aa26.47■■□□□ 1.83
CLN3-204ENST00000357857 FBXO31Q5XUX0 539 aaPredicted RBP26.46■■□□□ 1.83
CLN3-204ENST00000357857 STAC3Q96MF2 364 aa26.46■■□□□ 1.83
CLN3-204ENST00000357857 SLC52A1Q9NWF4 448 aa26.46■■□□□ 1.83
CLN3-204ENST00000357857 ZMYM3Q14202 1370 aa26.46■■□□□ 1.83
CLN3-204ENST00000357857 FER1L4A9Z1Z3 1794 aa26.45■■□□□ 1.82
CLN3-204ENST00000357857 MADDQ8WXG6 1647 aa26.45■■□□□ 1.82
CLN3-204ENST00000357857 CHGAP10645 457 aaKnown RBP26.44■■□□□ 1.82
CLN3-204ENST00000357857 EIF4G2P78344 907 aaKnown RBP eCLIP26.42■■□□□ 1.821e-9■■■■□ 22.4
CLN3-204ENST00000357857 PPLO60437 1756 aa26.42■■□□□ 1.82
CLN3-204ENST00000357857 IDI1Q13907 227 aa26.41■■□□□ 1.82
CLN3-204ENST00000357857 MYOM2P54296 1465 aa26.41■■□□□ 1.82
CLN3-204ENST00000357857 MYO5BQ9ULV0 1848 aa26.4■■□□□ 1.82
CLN3-204ENST00000357857 HSPA5P11021 654 aaKnown RBP26.4■■□□□ 1.82
CLN3-204ENST00000357857 HIRIP3Q9BW71 556 aaPredicted RBP26.4■■□□□ 1.82
CLN3-204ENST00000357857 TMEM131LA2VDJ0 1609 aa26.38■■□□□ 1.81
CLN3-204ENST00000357857 DIEXFQ68CQ4 756 aaKnown RBP26.37■■□□□ 1.81
CLN3-204ENST00000357857 ROCK2O75116 1388 aaKnown RBP26.37■■□□□ 1.81
CLN3-204ENST00000357857 RPGRIP1LQ68CZ1 1315 aa26.36■■□□□ 1.81
CLN3-204ENST00000357857 LAMC1P11047 1609 aa26.35■■□□□ 1.81
CLN3-204ENST00000357857 CARD11Q9BXL7 1154 aa26.34■■□□□ 1.81
CLN3-204ENST00000357857 C3P01024 1663 aa26.34■■□□□ 1.81
CLN3-204ENST00000357857 KIAA1210Q9ULL0 1709 aa26.34■■□□□ 1.81
CLN3-204ENST00000357857 USP47Q96K76 1375 aa26.33■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms