RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 MROH2BQ7Z745 1585 aa22.52■■□□□ 1.2
COL18A1-202ENST00000355480 NLRP13Q86W25 1043 aa22.52■■□□□ 1.2
COL18A1-202ENST00000355480 RBM19Q9Y4C8 960 aaKnown RBP22.52■■□□□ 1.2
COL18A1-202ENST00000355480 CCDC18Q5T9S5 1454 aa22.52■■□□□ 1.2
COL18A1-202ENST00000355480 SYAP1Q96A49 352 aaPredicted RBP22.51■■□□□ 1.19
COL18A1-202ENST00000355480 TOMM22Q9NS69 142 aa22.51■■□□□ 1.19
COL18A1-202ENST00000355480 RASSF8Q8NHQ8 419 aa22.5■■□□□ 1.19
COL18A1-202ENST00000355480 CCDC34Q96HJ3 373 aa22.5■■□□□ 1.19
COL18A1-202ENST00000355480 JPH4Q96JJ6 628 aa22.5■■□□□ 1.19
COL18A1-202ENST00000355480 NOL8Q76FK4 1167 aaKnown RBP22.49■■□□□ 1.19
COL18A1-202ENST00000355480 TPM4P67936 248 aa22.49■■□□□ 1.19
COL18A1-202ENST00000355480 NOC3LQ8WTT2 800 aaKnown RBP22.46■■□□□ 1.19
COL18A1-202ENST00000355480 RRP7AQ9Y3A4 280 aaKnown RBP22.46■■□□□ 1.19
COL18A1-202ENST00000355480 RAPGEF2Q9Y4G8 1499 aa22.45■■□□□ 1.18
COL18A1-202ENST00000355480 DEKP35659 375 aaKnown RBP22.45■■□□□ 1.18
COL18A1-202ENST00000355480 AMER1Q5JTC6 1135 aaPredicted RBP22.45■■□□□ 1.18
COL18A1-202ENST00000355480 C1orf141Q5JVX7 400 aa22.42■■□□□ 1.18
COL18A1-202ENST00000355480 COG3Q96JB2 828 aa22.42■■□□□ 1.18
COL18A1-202ENST00000355480 PDE3BQ13370 1112 aa22.42■■□□□ 1.18
COL18A1-202ENST00000355480 FOXD4L1Q9NU39 408 aa22.42■■□□□ 1.18
COL18A1-202ENST00000355480 EVA1CP58658 441 aa22.42■■□□□ 1.18
COL18A1-202ENST00000355480 CCDC144AA2RUR9 1427 aa22.41■■□□□ 1.18
COL18A1-202ENST00000355480 CSPP1Q1MSJ5 1256 aa22.41■■□□□ 1.18
COL18A1-202ENST00000355480 ELL2O00472 640 aaPredicted RBP22.4■■□□□ 1.18
COL18A1-202ENST00000355480 PHLDB1Q86UU1 1377 aa22.4■■□□□ 1.18
COL18A1-202ENST00000355480 CREBRFQ8IUR6 639 aa22.4■■□□□ 1.18
COL18A1-202ENST00000355480 CADPSQ9ULU8 1353 aa22.4■■□□□ 1.18
COL18A1-202ENST00000355480 VPS53Q5VIR6 699 aa22.39■■□□□ 1.18
COL18A1-202ENST00000355480 PANK3Q9H999 370 aa22.39■■□□□ 1.18
COL18A1-202ENST00000355480 MARCH6O60337 910 aa22.39■■□□□ 1.17
COL18A1-202ENST00000355480 ST20-MTHFSA0A0A6YYL1 179 aa22.39■■□□□ 1.17
COL18A1-202ENST00000355480 VGFO15240 615 aaPredicted RBP22.39■■□□□ 1.17
COL18A1-202ENST00000355480 KIF16BQ96L93 1317 aa22.38■■□□□ 1.17
COL18A1-202ENST00000355480 KIF15Q9NS87 1388 aa22.38■■□□□ 1.17
COL18A1-202ENST00000355480 UACAQ9BZF9 1416 aa22.37■■□□□ 1.17
COL18A1-202ENST00000355480 ST18O60284 1047 aa22.36■■□□□ 1.17
COL18A1-202ENST00000355480 KIF3AQ9Y496 699 aa22.36■■□□□ 1.17
COL18A1-202ENST00000355480 EVC2Q86UK5 1308 aa22.36■■□□□ 1.17
COL18A1-202ENST00000355480 PDE4CQ08493 712 aa22.35■■□□□ 1.17
COL18A1-202ENST00000355480 TEFQ10587 303 aa22.35■■□□□ 1.17
COL18A1-202ENST00000355480 MYBBP1AQ9BQG0 1328 aaKnown RBP22.35■■□□□ 1.17
COL18A1-202ENST00000355480 CGNL1Q0VF96 1302 aa22.35■■□□□ 1.17
COL18A1-202ENST00000355480 MSH5O43196 834 aa22.35■■□□□ 1.17
COL18A1-202ENST00000355480 CYB5RLQ6IPT4 315 aa22.34■■□□□ 1.17
COL18A1-202ENST00000355480 SF3A1Q15459 793 aaKnown RBP22.34■■□□□ 1.17
COL18A1-202ENST00000355480 RILPL2Q969X0 211 aa22.34■■□□□ 1.17
COL18A1-202ENST00000355480 MINK1Q8N4C8 1332 aaPredicted RBP22.33■■□□□ 1.17
COL18A1-202ENST00000355480 PRM3Q9NNZ6 103 aa22.33■■□□□ 1.17
COL18A1-202ENST00000355480 BCL2L13Q9BXK5 485 aa22.33■■□□□ 1.16
COL18A1-202ENST00000355480 TTC5Q8N0Z6 440 aa22.32■■□□□ 1.16
COL18A1-202ENST00000355480 NGEFQ8N5V2 710 aa22.32■■□□□ 1.16
COL18A1-202ENST00000355480 FOXD4L5Q5VV16 416 aaPredicted RBP22.31■■□□□ 1.16
COL18A1-202ENST00000355480 FOXD4L4Q8WXT5 416 aaPredicted RBP22.31■■□□□ 1.16
COL18A1-202ENST00000355480 GOLGA6L3A6NEY3 463 aa22.31■■□□□ 1.16
COL18A1-202ENST00000355480 PTPRGP23470 1445 aa22.29■■□□□ 1.16
COL18A1-202ENST00000355480 ANKRD45Q5TZF3 282 aa22.29■■□□□ 1.16
COL18A1-202ENST00000355480 NEXNQ0ZGT2 675 aa22.28■■□□□ 1.16
COL18A1-202ENST00000355480 H3BQV1 296 aa22.28■■□□□ 1.16
COL18A1-202ENST00000355480 EIF2S2P20042 333 aaKnown RBP22.28■■□□□ 1.16
COL18A1-202ENST00000355480 IFFO2Q5TF58 517 aa22.28■■□□□ 1.16
COL18A1-202ENST00000355480 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.27■■□□□ 1.16
COL18A1-202ENST00000355480 TOP2AP11388 1531 aaKnown RBP22.26■■□□□ 1.15
COL18A1-202ENST00000355480 ZKSCAN2Q63HK3 967 aa22.26■■□□□ 1.15
COL18A1-202ENST00000355480 ARID3AQ99856 593 aa22.26■■□□□ 1.15
COL18A1-202ENST00000355480 AKAP17AQ02040 695 aaKnown RBP22.25■■□□□ 1.15
COL18A1-202ENST00000355480 CEP89Q96ST8 783 aa22.25■■□□□ 1.15
COL18A1-202ENST00000355480 IPO9Q96P70 1041 aaKnown RBP22.25■■□□□ 1.15
COL18A1-202ENST00000355480 FAM184AQ8NB25 1140 aa22.25■■□□□ 1.15
COL18A1-202ENST00000355480 A0A0U1RQG5 324 aaPredicted RBP22.24■■□□□ 1.15
COL18A1-202ENST00000355480 E9PSI1 815 aa22.24■■□□□ 1.15
COL18A1-202ENST00000355480 PHF14O94880 888 aa22.24■■□□□ 1.15
COL18A1-202ENST00000355480 C9orf78Q9NZ63 289 aaPredicted RBP22.24■■□□□ 1.15
COL18A1-202ENST00000355480 SYTL4Q96C24 671 aaPredicted RBP22.23■■□□□ 1.15
COL18A1-202ENST00000355480 PES1O00541 588 aaKnown RBP22.23■■□□□ 1.15
COL18A1-202ENST00000355480 PSME1Q06323 249 aa22.23■■□□□ 1.15
COL18A1-202ENST00000355480 TPM3P06753 285 aa22.22■■□□□ 1.15
COL18A1-202ENST00000355480 NOL10Q9BSC4 688 aaKnown RBP22.22■■□□□ 1.15
COL18A1-202ENST00000355480 DIAPH3Q9NSV4 1193 aa22.21■■□□□ 1.15
COL18A1-202ENST00000355480 SYNE3Q6ZMZ3 975 aa22.21■■□□□ 1.15
COL18A1-202ENST00000355480 RAD21O60216 631 aa22.2■■□□□ 1.14
COL18A1-202ENST00000355480 TPD52L1Q16890 204 aaPredicted RBP22.2■■□□□ 1.14
COL18A1-202ENST00000355480 PLIN1O60240 522 aa22.2■■□□□ 1.14
COL18A1-202ENST00000355480 LRRFIP1Q32MZ4 808 aaKnown RBP22.2■■□□□ 1.14
COL18A1-202ENST00000355480 NECTIN2Q92692 538 aa22.2■■□□□ 1.14
COL18A1-202ENST00000355480 CHMP4CQ96CF2 233 aa22.2■■□□□ 1.14
COL18A1-202ENST00000355480 AMOTL1Q8IY63 956 aa22.2■■□□□ 1.14
COL18A1-202ENST00000355480 MEX3CQ5U5Q3 659 aaKnown RBP22.19■■□□□ 1.14
COL18A1-202ENST00000355480 DIAPH1O60610 1272 aaKnown RBP22.19■■□□□ 1.14
COL18A1-202ENST00000355480 TRIM34Q9BYJ4 488 aa22.19■■□□□ 1.14
COL18A1-202ENST00000355480 CENPQQ7L2Z9 268 aaPredicted RBP22.19■■□□□ 1.14
COL18A1-202ENST00000355480 OSCARQ8IYS5 282 aa22.19■■□□□ 1.14
COL18A1-202ENST00000355480 WIZO95785 1651 aa22.19■■□□□ 1.14
COL18A1-202ENST00000355480 USP47Q96K76 1375 aa22.17■■□□□ 1.14
COL18A1-202ENST00000355480 COG6Q9Y2V7 657 aa22.16■■□□□ 1.14
COL18A1-202ENST00000355480 APAF1O14727 1248 aa22.16■■□□□ 1.14
COL18A1-202ENST00000355480 GOLGA6L1Q8N7Z2 621 aa22.16■■□□□ 1.14
COL18A1-202ENST00000355480 FOXD4L6Q3SYB3 417 aaPredicted RBP22.15■■□□□ 1.14
COL18A1-202ENST00000355480 MCTP1Q6DN14 999 aa22.15■■□□□ 1.14
COL18A1-202ENST00000355480 FOXD4L3Q6VB84 417 aaPredicted RBP22.15■■□□□ 1.14
COL18A1-202ENST00000355480 VPS37DQ86XT2 251 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms