RNA–Protein interactions for RNA: ENST00000354822.6

NKX2-1-201, Transcript of NK2 homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene NKX2-1, Length 2,191 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1-201ENST00000354822 MRS2Q9HD23 443 aa30.59■■■□□ 2.49
NKX2-1-201ENST00000354822 BCORL1Q5H9F3 1711 aa30.59■■■□□ 2.49
NKX2-1-201ENST00000354822 DCAF11Q8TEB1 546 aa30.59■■■□□ 2.49
NKX2-1-201ENST00000354822 CCDC144AA2RUR9 1427 aa30.58■■■□□ 2.49
NKX2-1-201ENST00000354822 ABCA9Q8IUA7 1624 aa30.57■■■□□ 2.48
NKX2-1-201ENST00000354822 CCDC184Q52MB2 194 aa30.57■■■□□ 2.48
NKX2-1-201ENST00000354822 TRAPPC8Q9Y2L5 1435 aa30.55■■■□□ 2.48
NKX2-1-201ENST00000354822 KDM2AQ9Y2K7 1162 aa30.55■■■□□ 2.48
NKX2-1-201ENST00000354822 ERBINQ96RT1 1412 aa30.54■■■□□ 2.48
NKX2-1-201ENST00000354822 DHX29Q7Z478 1369 aaKnown RBP30.54■■■□□ 2.48
NKX2-1-201ENST00000354822 IQGAP3Q86VI3 1631 aa30.53■■■□□ 2.48
NKX2-1-201ENST00000354822 ASXL2Q76L83 1435 aa30.51■■■□□ 2.47
NKX2-1-201ENST00000354822 BCANQ96GW7 911 aa30.51■■■□□ 2.47
NKX2-1-201ENST00000354822 RTEL1-TNFRSF6BF6WH68 1400 aa30.49■■■□□ 2.47
NKX2-1-201ENST00000354822 FAM9BQ8IZU0 186 aa30.49■■■□□ 2.47
NKX2-1-201ENST00000354822 GRWD1Q9BQ67 446 aaKnown RBP eCLIP30.48■■■□□ 2.47
NKX2-1-201ENST00000354822 MAGI2Q86UL8 1455 aa30.48■■■□□ 2.47
NKX2-1-201ENST00000354822 ATP10AO60312 1499 aa30.46■■■□□ 2.47
NKX2-1-201ENST00000354822 PLA2R1Q13018 1463 aa30.46■■■□□ 2.47
NKX2-1-201ENST00000354822 FANCAO15360 1455 aa30.46■■■□□ 2.47
NKX2-1-201ENST00000354822 ZBED9Q6R2W3 1325 aa30.46■■■□□ 2.47
NKX2-1-201ENST00000354822 POLR3GLQ9BT43 218 aa30.45■■■□□ 2.47
NKX2-1-201ENST00000354822 PRAG1Q86YV5 1406 aa30.45■■■□□ 2.47
NKX2-1-201ENST00000354822 ST20-MTHFSA0A0A6YYL1 179 aa30.45■■■□□ 2.46
NKX2-1-201ENST00000354822 SPAG9O60271 1321 aaKnown RBP30.44■■■□□ 2.46
NKX2-1-201ENST00000354822 ZFYVE16Q7Z3T8 1539 aa30.43■■■□□ 2.46
NKX2-1-201ENST00000354822 NPM1P06748 294 aaKnown RBP eCLIP30.41■■■□□ 2.46
NKX2-1-201ENST00000354822 TSHZ2Q9NRE2 1034 aa30.41■■■□□ 2.46
NKX2-1-201ENST00000354822 TRPM1Q7Z4N2 1603 aa30.39■■■□□ 2.46
NKX2-1-201ENST00000354822 AFAP1Q8N556 730 aa30.39■■■□□ 2.46
NKX2-1-201ENST00000354822 ERICH6BQ5W0A0 696 aa30.38■■■□□ 2.45
NKX2-1-201ENST00000354822 GPRASP1Q5JY77 1395 aa30.37■■■□□ 2.45
NKX2-1-201ENST00000354822 KTN1Q86UP2 1357 aaKnown RBP30.37■■■□□ 2.45
NKX2-1-201ENST00000354822 INO80Q9ULG1 1556 aaPredicted RBP30.36■■■□□ 2.45
NKX2-1-201ENST00000354822 RGL3Q3MIN7 710 aa30.35■■■□□ 2.45
NKX2-1-201ENST00000354822 ADGRL1O94910 1474 aa30.35■■■□□ 2.45
NKX2-1-201ENST00000354822 A2MP01023 1474 aa30.35■■■□□ 2.45
NKX2-1-201ENST00000354822 ATP7AQ04656 1500 aa30.34■■■□□ 2.45
NKX2-1-201ENST00000354822 LAMC1P11047 1609 aa30.33■■■□□ 2.45
NKX2-1-201ENST00000354822 SCAPERQ9BY12 1400 aa30.32■■■□□ 2.44
NKX2-1-201ENST00000354822 EIF2AK4Q9P2K8 1649 aaKnown RBP30.31■■■□□ 2.44
NKX2-1-201ENST00000354822 RALBP1Q15311 655 aa30.28■■■□□ 2.44
NKX2-1-201ENST00000354822 DEPDC5O75140 1603 aa30.27■■■□□ 2.44
NKX2-1-201ENST00000354822 CFAP74Q9C0B2 1584 aa30.24■■■□□ 2.43
NKX2-1-201ENST00000354822 NBPF1Q3BBV0 1214 aa30.24■■■□□ 2.43
NKX2-1-201ENST00000354822 E9PCH4 1651 aa30.24■■■□□ 2.43
NKX2-1-201ENST00000354822 PRDM15P57071 1507 aaPredicted RBP30.23■■■□□ 2.43
NKX2-1-201ENST00000354822 TMC1Q8TDI8 760 aa30.23■■■□□ 2.43
NKX2-1-201ENST00000354822 STAC3Q96MF2 364 aa30.22■■■□□ 2.43
NKX2-1-201ENST00000354822 PNISRQ8TF01 805 aaKnown RBP30.21■■■□□ 2.43
NKX2-1-201ENST00000354822 MYBBP1AQ9BQG0 1328 aaKnown RBP30.2■■■□□ 2.43
NKX2-1-201ENST00000354822 BRD4O60885 1362 aaPredicted RBP30.2■■■□□ 2.43
NKX2-1-201ENST00000354822 CD109Q6YHK3 1445 aa30.2■■■□□ 2.42
NKX2-1-201ENST00000354822 CNGB1Q14028 1251 aaPredicted RBP30.17■■■□□ 2.42
NKX2-1-201ENST00000354822 MYT1LQ9UL68 1186 aa30.16■■■□□ 2.42
NKX2-1-201ENST00000354822 ZNF518AQ6AHZ1 1483 aa30.16■■■□□ 2.42
NKX2-1-201ENST00000354822 KIDINS220Q9ULH0 1771 aa30.16■■■□□ 2.42
NKX2-1-201ENST00000354822 TET3O43151 1660 aa30.16■■■□□ 2.42
NKX2-1-201ENST00000354822 VWDEQ8N2E2 1590 aa30.15■■■□□ 2.42
NKX2-1-201ENST00000354822 WASHC2CQ9Y4E1 1318 aa30.15■■■□□ 2.42
NKX2-1-201ENST00000354822 PTPRTO14522 1441 aa30.15■■■□□ 2.42
NKX2-1-201ENST00000354822 KANK1Q14678 1352 aa30.15■■■□□ 2.42
NKX2-1-201ENST00000354822 TRPM2O94759 1503 aa30.15■■■□□ 2.42
NKX2-1-201ENST00000354822 COL17A1Q9UMD9 1497 aaPredicted RBP30.14■■■□□ 2.42
NKX2-1-201ENST00000354822 SMG6Q86US8 1419 aaKnown RBP30.14■■■□□ 2.42
NKX2-1-201ENST00000354822 TESK2Q96S53 571 aa30.14■■■□□ 2.41
NKX2-1-201ENST00000354822 PPP4R2Q9NY27 417 aa30.12■■■□□ 2.41
NKX2-1-201ENST00000354822 SPHKAPQ2M3C7 1700 aa30.1■■■□□ 2.41
NKX2-1-201ENST00000354822 IRX6P78412 446 aaPredicted RBP30.1■■■□□ 2.41
NKX2-1-201ENST00000354822 TMF1P82094 1093 aa30.1■■■□□ 2.41
NKX2-1-201ENST00000354822 LRPPRCP42704 1394 aaKnown RBP30.1■■■□□ 2.41
NKX2-1-201ENST00000354822 RNF17Q9BXT8 1623 aaKnown RBP30.09■■■□□ 2.41
NKX2-1-201ENST00000354822 KIF3BO15066 747 aa30.08■■■□□ 2.41
NKX2-1-201ENST00000354822 PER1O15534 1290 aaPredicted RBP30.08■■■□□ 2.41
NKX2-1-201ENST00000354822 MROH1Q8NDA8 1641 aa30.08■■■□□ 2.41
NKX2-1-201ENST00000354822 PARD3Q8TEW0 1356 aa30.08■■■□□ 2.41
NKX2-1-201ENST00000354822 POGZQ7Z3K3 1410 aa30.07■■■□□ 2.41
NKX2-1-201ENST00000354822 MYT1Q01538 1121 aa30.07■■■□□ 2.4
NKX2-1-201ENST00000354822 NUDCQ9Y266 331 aa30.07■■■□□ 2.4
NKX2-1-201ENST00000354822 NLRP13Q86W25 1043 aa30.06■■■□□ 2.4
NKX2-1-201ENST00000354822 CEP152O94986 1710 aa30.05■■■□□ 2.4
NKX2-1-201ENST00000354822 DISP3Q9P2K9 1392 aa30.04■■■□□ 2.4
NKX2-1-201ENST00000354822 MADDQ8WXG6 1647 aa30.03■■■□□ 2.4
NKX2-1-201ENST00000354822 NEO1Q92859 1461 aa30.02■■■□□ 2.4
NKX2-1-201ENST00000354822 MLH3Q9UHC1 1453 aa30.02■■■□□ 2.4
NKX2-1-201ENST00000354822 NEURL4Q96JN8 1562 aa30.01■■■□□ 2.39
NKX2-1-201ENST00000354822 HECW2Q9P2P5 1572 aa30■■■□□ 2.39
NKX2-1-201ENST00000354822 CLTCL1P53675 1640 aa30■■■□□ 2.39
NKX2-1-201ENST00000354822 PANK3Q9H999 370 aa29.96■■■□□ 2.39
NKX2-1-201ENST00000354822 CDCA8Q53HL2 280 aa29.95■■■□□ 2.38
NKX2-1-201ENST00000354822 RNF123Q5XPI4 1314 aa29.95■■■□□ 2.38
NKX2-1-201ENST00000354822 LMTK2Q8IWU2 1503 aa29.95■■■□□ 2.38
NKX2-1-201ENST00000354822 RBM19Q9Y4C8 960 aaKnown RBP29.94■■■□□ 2.38
NKX2-1-201ENST00000354822 IQGAP1P46940 1657 aa29.94■■■□□ 2.38
NKX2-1-201ENST00000354822 EFCAB6Q5THR3 1501 aa29.94■■■□□ 2.38
NKX2-1-201ENST00000354822 SCAF11Q99590 1463 aaKnown RBP29.93■■■□□ 2.38
NKX2-1-201ENST00000354822 MAP3K4Q9Y6R4 1608 aa29.92■■■□□ 2.38
NKX2-1-201ENST00000354822 INSRP06213 1382 aa29.92■■■□□ 2.38
NKX2-1-201ENST00000354822 RIMBP3CA6NJZ7 1639 aa29.91■■■□□ 2.38
NKX2-1-201ENST00000354822 RIMBP3BA6NNM3 1639 aa29.91■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms