RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 FRMPD1Q5SYB0 1578 aa14.49□□□□□ -0.09
SYNE1-203ENST00000354674 TSPOAP1O95153 1857 aa14.49□□□□□ -0.09
SYNE1-203ENST00000354674 UNC13BO14795 1591 aa14.49□□□□□ -0.09
SYNE1-203ENST00000354674 HECW2Q9P2P5 1572 aa14.49□□□□□ -0.09
SYNE1-203ENST00000354674 PZPP20742 1482 aa14.48□□□□□ -0.09
SYNE1-203ENST00000354674 MAGI2Q86UL8 1455 aa14.47□□□□□ -0.09
SYNE1-203ENST00000354674 ZMYM4Q5VZL5 1548 aa14.47□□□□□ -0.09
SYNE1-203ENST00000354674 EIF2AK4Q9P2K8 1649 aaKnown RBP14.46□□□□□ -0.09
SYNE1-203ENST00000354674 ZNF316A6NFI3 1004 aaPredicted RBP14.45□□□□□ -0.1
SYNE1-203ENST00000354674 MPHOSPH9Q99550 1183 aa14.45□□□□□ -0.1
SYNE1-203ENST00000354674 TRIM52Q96A61 297 aa14.44□□□□□ -0.1
SYNE1-203ENST00000354674 DHX29Q7Z478 1369 aaKnown RBP14.44□□□□□ -0.1
SYNE1-203ENST00000354674 DEPDC5O75140 1603 aa14.44□□□□□ -0.1
SYNE1-203ENST00000354674 ABCA6Q8N139 1617 aa14.44□□□□□ -0.1
SYNE1-203ENST00000354674 RAPGEF3O95398 923 aa14.43□□□□□ -0.1
SYNE1-203ENST00000354674 BCORL1Q5H9F3 1711 aa14.43□□□□□ -0.1
SYNE1-203ENST00000354674 IQGAP3Q86VI3 1631 aa14.42□□□□□ -0.1
SYNE1-203ENST00000354674 DIP2CQ9Y2E4 1556 aa14.41□□□□□ -0.1
SYNE1-203ENST00000354674 NUP155O75694 1391 aa14.41□□□□□ -0.1
SYNE1-203ENST00000354674 A2MP01023 1474 aa14.41□□□□□ -0.1
SYNE1-203ENST00000354674 FAM135AQ9P2D6 1515 aa14.4□□□□□ -0.1
SYNE1-203ENST00000354674 COL17A1Q9UMD9 1497 aaPredicted RBP14.4□□□□□ -0.11
SYNE1-203ENST00000354674 SALL2Q9Y467 1007 aaPredicted RBP14.39□□□□□ -0.11
SYNE1-203ENST00000354674 VWDEQ8N2E2 1590 aa14.39□□□□□ -0.11
SYNE1-203ENST00000354674 MROH1Q8NDA8 1641 aa14.39□□□□□ -0.11
SYNE1-203ENST00000354674 RNF17Q9BXT8 1623 aaKnown RBP14.39□□□□□ -0.11
SYNE1-203ENST00000354674 SLC4A1APQ9BWU0 796 aaKnown RBP14.38□□□□□ -0.11
SYNE1-203ENST00000354674 ANKRD30BQ9BXX2 1392 aa14.38□□□□□ -0.11
SYNE1-203ENST00000354674 PRDM15P57071 1507 aaPredicted RBP14.38□□□□□ -0.11
SYNE1-203ENST00000354674 REREQ9P2R6 1566 aa14.37□□□□□ -0.11
SYNE1-203ENST00000354674 YEATS2Q9ULM3 1422 aa14.36□□□□□ -0.11
SYNE1-203ENST00000354674 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.36□□□□□ -0.11
SYNE1-203ENST00000354674 TIMELESSQ9UNS1 1208 aa14.36□□□□□ -0.11
SYNE1-203ENST00000354674 SIN3AQ96ST3 1273 aa14.35□□□□□ -0.11
SYNE1-203ENST00000354674 MYT1LQ9UL68 1186 aa14.34□□□□□ -0.11
SYNE1-203ENST00000354674 PKD2Q13563 968 aa14.33□□□□□ -0.12
SYNE1-203ENST00000354674 ATP10AO60312 1499 aa14.33□□□□□ -0.12
SYNE1-203ENST00000354674 RTN4Q9NQC3 1192 aaKnown RBP14.32□□□□□ -0.12
SYNE1-203ENST00000354674 LMTK2Q8IWU2 1503 aa14.32□□□□□ -0.12
SYNE1-203ENST00000354674 FOXD1Q16676 465 aa14.32□□□□□ -0.12
SYNE1-203ENST00000354674 RBM19Q9Y4C8 960 aaKnown RBP14.32□□□□□ -0.12
SYNE1-203ENST00000354674 ARHGEF40Q8TER5 1519 aa14.32□□□□□ -0.12
SYNE1-203ENST00000354674 TET3O43151 1660 aa14.31□□□□□ -0.12
SYNE1-203ENST00000354674 KIF3BO15066 747 aa14.31□□□□□ -0.12
SYNE1-203ENST00000354674 RPRD2Q5VT52 1461 aaKnown RBP14.31□□□□□ -0.12
SYNE1-203ENST00000354674 AGLP35573 1532 aa14.3□□□□□ -0.12
SYNE1-203ENST00000354674 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.29□□□□□ -0.12
SYNE1-203ENST00000354674 E9PCH4 1651 aa14.29□□□□□ -0.12
SYNE1-203ENST00000354674 MSH5O43196 834 aa14.29□□□□□ -0.12
SYNE1-203ENST00000354674 KANK1Q14678 1352 aa14.29□□□□□ -0.12
SYNE1-203ENST00000354674 TRHP20396 242 aaPredicted RBP14.28□□□□□ -0.12
SYNE1-203ENST00000354674 PLA2R1Q13018 1463 aa14.28□□□□□ -0.12
SYNE1-203ENST00000354674 SIGLEC1Q9BZZ2 1709 aa14.27□□□□□ -0.13
SYNE1-203ENST00000354674 EFCAB6Q5THR3 1501 aa14.26□□□□□ -0.13
SYNE1-203ENST00000354674 ZC3H13Q5T200 1668 aaKnown RBP14.25□□□□□ -0.13
SYNE1-203ENST00000354674 CEP152O94986 1710 aa14.25□□□□□ -0.13
SYNE1-203ENST00000354674 PTPRTO14522 1441 aa14.25□□□□□ -0.13
SYNE1-203ENST00000354674 ABCC3O15438 1527 aa14.25□□□□□ -0.13
SYNE1-203ENST00000354674 FKBP8Q14318 412 aa14.25□□□□□ -0.13
SYNE1-203ENST00000354674 DEKP35659 375 aaKnown RBP14.24□□□□□ -0.13
SYNE1-203ENST00000354674 TONSLQ96HA7 1378 aa14.24□□□□□ -0.13
SYNE1-203ENST00000354674 TRPM2O94759 1503 aa14.23□□□□□ -0.13
SYNE1-203ENST00000354674 PPP1R15AO75807 674 aaPredicted RBP14.22□□□□□ -0.13
SYNE1-203ENST00000354674 SPHKAPQ2M3C7 1700 aa14.22□□□□□ -0.13
SYNE1-203ENST00000354674 CAMSAP1Q5T5Y3 1602 aa14.21□□□□□ -0.13
SYNE1-203ENST00000354674 ARHGAP31Q2M1Z3 1444 aa14.2□□□□□ -0.14
SYNE1-203ENST00000354674 PPP6R1Q9UPN7 881 aa14.2□□□□□ -0.14
SYNE1-203ENST00000354674 GGT6Q6P531 493 aa14.2□□□□□ -0.14
SYNE1-203ENST00000354674 CCDC144AA2RUR9 1427 aa14.19□□□□□ -0.14
SYNE1-203ENST00000354674 NBR1Q14596 966 aa14.19□□□□□ -0.14
SYNE1-203ENST00000354674 NPATQ14207 1427 aa14.18□□□□□ -0.14
SYNE1-203ENST00000354674 L3MBTL2Q969R5 705 aa14.18□□□□□ -0.14
SYNE1-203ENST00000354674 NEURL4Q96JN8 1562 aa14.17□□□□□ -0.14
SYNE1-203ENST00000354674 WASHC2CQ9Y4E1 1318 aa14.17□□□□□ -0.14
SYNE1-203ENST00000354674 CLTCL1P53675 1640 aa14.16□□□□□ -0.14
SYNE1-203ENST00000354674 NOS1P29475 1434 aa14.15□□□□□ -0.14
SYNE1-203ENST00000354674 SPATA31E1Q6ZUB1 1445 aa14.14□□□□□ -0.15
SYNE1-203ENST00000354674 CNTLNQ9NXG0 1405 aa14.14□□□□□ -0.15
SYNE1-203ENST00000354674 UHRF1BP1Q6BDS2 1440 aa14.12□□□□□ -0.15
SYNE1-203ENST00000354674 PIK3C2BO00750 1634 aa14.12□□□□□ -0.15
SYNE1-203ENST00000354674 CLTCQ00610 1675 aaKnown RBP14.12□□□□□ -0.15
SYNE1-203ENST00000354674 SYNMO15061 1565 aa14.11□□□□□ -0.15
SYNE1-203ENST00000354674 PREX1Q8TCU6 1659 aa14.1□□□□□ -0.15
SYNE1-203ENST00000354674 UGGT1Q9NYU2 1555 aa14.09□□□□□ -0.15
SYNE1-203ENST00000354674 EIF5BO60841 1220 aaKnown RBP14.09□□□□□ -0.15
SYNE1-203ENST00000354674 MROH2AA6NES4 1674 aa14.08□□□□□ -0.16
SYNE1-203ENST00000354674 NBPF8Q3BBV2 869 aa14.08□□□□□ -0.16
SYNE1-203ENST00000354674 IL27Q8NEV9 243 aa14.08□□□□□ -0.16
SYNE1-203ENST00000354674 KIF1BO60333 1816 aa14.08□□□□□ -0.16
SYNE1-203ENST00000354674 ADGRB3O60242 1522 aa14.07□□□□□ -0.16
SYNE1-203ENST00000354674 SPATA31D1Q6ZQQ2 1576 aa14.07□□□□□ -0.16
SYNE1-203ENST00000354674 ERVK-7P63135 1459 aa14.07□□□□□ -0.16
SYNE1-203ENST00000354674 CFAP65Q6ZU64 1925 aaKnown RBP14.05□□□□□ -0.16
SYNE1-203ENST00000354674 IFT172Q9UG01 1749 aa14.05□□□□□ -0.16
SYNE1-203ENST00000354674 STAC3Q96MF2 364 aa14.04□□□□□ -0.16
SYNE1-203ENST00000354674 PRAG1Q86YV5 1406 aa14.04□□□□□ -0.16
SYNE1-203ENST00000354674 MLECQ14165 292 aa14.03□□□□□ -0.16
SYNE1-203ENST00000354674 DCAF11Q8TEB1 546 aa14.03□□□□□ -0.16
SYNE1-203ENST00000354674 ARID4BQ4LE39 1312 aaPredicted RBP14.03□□□□□ -0.16
SYNE1-203ENST00000354674 ZMYM3Q14202 1370 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms