RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 KDM5DQ9BY66 1539 aa22.91■■□□□ 1.26
PRPF40A-201ENST00000354363 TSPY4P0CV99 314 aa22.91■■□□□ 1.26
PRPF40A-201ENST00000354363 TSPY10P0CW01 314 aa22.91■■□□□ 1.26
PRPF40A-201ENST00000354363 MAST1Q9Y2H9 1570 aa22.9■■□□□ 1.26
PRPF40A-201ENST00000354363 A2ML1A8K2U0 1454 aa22.89■■□□□ 1.25
PRPF40A-201ENST00000354363 TCOF1Q13428 1488 aaKnown RBP22.88■■□□□ 1.25
PRPF40A-201ENST00000354363 DNMT1P26358 1616 aaKnown RBP22.88■■□□□ 1.25
PRPF40A-201ENST00000354363 PZPP20742 1482 aa22.88■■□□□ 1.25
PRPF40A-201ENST00000354363 PKD2Q13563 968 aa22.87■■□□□ 1.25
PRPF40A-201ENST00000354363 MYOM3Q5VTT5 1437 aa22.86■■□□□ 1.25
PRPF40A-201ENST00000354363 MIA2Q96PC5 1412 aa22.86■■□□□ 1.25
PRPF40A-201ENST00000354363 FBXO31Q5XUX0 539 aaPredicted RBP22.86■■□□□ 1.25
PRPF40A-201ENST00000354363 WASHC2CQ9Y4E1 1318 aa22.85■■□□□ 1.25
PRPF40A-201ENST00000354363 IQSEC2Q5JU85 1478 aa22.85■■□□□ 1.25
PRPF40A-201ENST00000354363 RNF17Q9BXT8 1623 aaKnown RBP22.85■■□□□ 1.25
PRPF40A-201ENST00000354363 TNRQ92752 1358 aa22.85■■□□□ 1.25
PRPF40A-201ENST00000354363 POLR1AO95602 1720 aaPredicted RBP22.83■■□□□ 1.24
PRPF40A-201ENST00000354363 EIF2AK4Q9P2K8 1649 aaKnown RBP22.81■■□□□ 1.24
PRPF40A-201ENST00000354363 ZNF335Q9H4Z2 1342 aaPredicted RBP22.81■■□□□ 1.24
PRPF40A-201ENST00000354363 ZC3H13Q5T200 1668 aaKnown RBP22.8■■□□□ 1.24
PRPF40A-201ENST00000354363 CROCC2H7BZ55 1655 aa22.77■■□□□ 1.24
PRPF40A-201ENST00000354363 CFAP65Q6ZU64 1925 aaKnown RBP22.77■■□□□ 1.24
PRPF40A-201ENST00000354363 ABCC3O15438 1527 aa22.77■■□□□ 1.24
PRPF40A-201ENST00000354363 MROH1Q8NDA8 1641 aa22.77■■□□□ 1.23
PRPF40A-201ENST00000354363 NEURL4Q96JN8 1562 aa22.76■■□□□ 1.23
PRPF40A-201ENST00000354363 CEP152O94986 1710 aa22.76■■□□□ 1.23
PRPF40A-201ENST00000354363 PTPN23Q9H3S7 1636 aa22.75■■□□□ 1.23
PRPF40A-201ENST00000354363 NLRP1Q9C000 1473 aa22.75■■□□□ 1.23
PRPF40A-201ENST00000354363 DUOX2Q9NRD8 1548 aa22.74■■□□□ 1.23
PRPF40A-201ENST00000354363 APLP2Q06481 763 aa22.73■■□□□ 1.23
PRPF40A-201ENST00000354363 SPATA31D1Q6ZQQ2 1576 aa22.72■■□□□ 1.23
PRPF40A-201ENST00000354363 UGGT1Q9NYU2 1555 aa22.72■■□□□ 1.23
PRPF40A-201ENST00000354363 SHANK2Q9UPX8 1470 aa22.71■■□□□ 1.23
PRPF40A-201ENST00000354363 ABCC5O15440 1437 aa22.7■■□□□ 1.23
PRPF40A-201ENST00000354363 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP22.7■■□□□ 1.22
PRPF40A-201ENST00000354363 THEMISQ8N1K5 641 aaPredicted RBP22.68■■□□□ 1.22
PRPF40A-201ENST00000354363 ERVK-7P63135 1459 aa22.68■■□□□ 1.22
PRPF40A-201ENST00000354363 DEPDC5O75140 1603 aa22.67■■□□□ 1.22
PRPF40A-201ENST00000354363 KIF15Q9NS87 1388 aa22.67■■□□□ 1.22
PRPF40A-201ENST00000354363 ANKLE2Q86XL3 938 aa22.67■■□□□ 1.22
PRPF40A-201ENST00000354363 FGD6Q6ZV73 1430 aa22.66■■□□□ 1.22
PRPF40A-201ENST00000354363 DAPK1P53355 1430 aa22.65■■□□□ 1.22
PRPF40A-201ENST00000354363 PRDM15P57071 1507 aaPredicted RBP22.65■■□□□ 1.22
PRPF40A-201ENST00000354363 ERBINQ96RT1 1412 aa22.65■■□□□ 1.22
PRPF40A-201ENST00000354363 UBAP1LF5GYI3 381 aa22.64■■□□□ 1.21
PRPF40A-201ENST00000354363 RRP7BPQ9NSQ0 103 aa22.64■■□□□ 1.21
PRPF40A-201ENST00000354363 MED14O60244 1454 aa22.63■■□□□ 1.21
PRPF40A-201ENST00000354363 NPHP4O75161 1426 aaPredicted RBP22.62■■□□□ 1.21
PRPF40A-201ENST00000354363 CPS1P31327 1500 aa22.62■■□□□ 1.21
PRPF40A-201ENST00000354363 IQGAP1P46940 1657 aa22.62■■□□□ 1.21
PRPF40A-201ENST00000354363 UBR1Q8IWV7 1749 aa22.62■■□□□ 1.21
PRPF40A-201ENST00000354363 VWDEQ8N2E2 1590 aa22.61■■□□□ 1.21
PRPF40A-201ENST00000354363 DISP3Q9P2K9 1392 aa22.61■■□□□ 1.21
PRPF40A-201ENST00000354363 ARHGAP31Q2M1Z3 1444 aa22.59■■□□□ 1.21
PRPF40A-201ENST00000354363 CHIC2Q9UKJ5 165 aa22.56■■□□□ 1.2
PRPF40A-201ENST00000354363 ANKRD30AQ9BXX3 1397 aa22.55■■□□□ 1.2
PRPF40A-201ENST00000354363 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.55■■□□□ 1.23e-8■■■■□ 24.9
PRPF40A-201ENST00000354363 STRCP1A6NGW2 1772 aa22.55■■□□□ 1.2
PRPF40A-201ENST00000354363 KANK1Q14678 1352 aa22.52■■□□□ 1.2
PRPF40A-201ENST00000354363 PIK3C2BO00750 1634 aa22.51■■□□□ 1.19
PRPF40A-201ENST00000354363 ILDR2Q71H61 639 aa22.5■■□□□ 1.19
PRPF40A-201ENST00000354363 SLIT1O75093 1534 aa22.5■■□□□ 1.19
PRPF40A-201ENST00000354363 LMTK2Q8IWU2 1503 aa22.5■■□□□ 1.19
PRPF40A-201ENST00000354363 ADGRL2O95490 1459 aa22.5■■□□□ 1.19
PRPF40A-201ENST00000354363 ARHGAP23Q9P227 1491 aa22.5■■□□□ 1.19
PRPF40A-201ENST00000354363 SCAF11Q99590 1463 aaKnown RBP22.49■■□□□ 1.19
PRPF40A-201ENST00000354363 TOM1O60784 492 aa22.48■■□□□ 1.19
PRPF40A-201ENST00000354363 KDM5AP29375 1690 aaKnown RBP22.46■■□□□ 1.19
PRPF40A-201ENST00000354363 LTKP29376 864 aa22.46■■□□□ 1.19
PRPF40A-201ENST00000354363 FAM50AQ14320 339 aaKnown RBP22.46■■□□□ 1.19
PRPF40A-201ENST00000354363 SYNMO15061 1565 aa22.45■■□□□ 1.18
PRPF40A-201ENST00000354363 PIP4K2BP78356 416 aa22.45■■□□□ 1.18
PRPF40A-201ENST00000354363 SCAF1Q9H7N4 1312 aaKnown RBP22.45■■□□□ 1.18
PRPF40A-201ENST00000354363 ALKQ9UM73 1620 aa22.45■■□□□ 1.18
PRPF40A-201ENST00000354363 TXNDC2Q86VQ3 553 aa22.44■■□□□ 1.18
PRPF40A-201ENST00000354363 EFCAB6Q5THR3 1501 aa22.43■■□□□ 1.18
PRPF40A-201ENST00000354363 LRRC7Q96NW7 1537 aa22.43■■□□□ 1.18
PRPF40A-201ENST00000354363 HSPA1LP34931 641 aa22.41■■□□□ 1.18
PRPF40A-201ENST00000354363 NOS1P29475 1434 aa22.4■■□□□ 1.18
PRPF40A-201ENST00000354363 TMEM2Q9UHN6 1383 aa22.4■■□□□ 1.18
PRPF40A-201ENST00000354363 IDI1Q13907 227 aa22.4■■□□□ 1.18
PRPF40A-201ENST00000354363 EID1Q9Y6B2 187 aa22.4■■□□□ 1.18
PRPF40A-201ENST00000354363 ANKRD50Q9ULJ7 1429 aa22.39■■□□□ 1.18
PRPF40A-201ENST00000354363 STAG3Q9UJ98 1225 aa22.39■■□□□ 1.18
PRPF40A-201ENST00000354363 XIRP1Q702N8 1843 aaKnown RBP22.38■■□□□ 1.17
PRPF40A-201ENST00000354363 TET3O43151 1660 aa22.35■■□□□ 1.17
PRPF40A-201ENST00000354363 ADGRB3O60242 1522 aa22.35■■□□□ 1.17
PRPF40A-201ENST00000354363 MYO5BQ9ULV0 1848 aa22.35■■□□□ 1.17
PRPF40A-201ENST00000354363 SOCS7O14512 581 aa22.35■■□□□ 1.17
PRPF40A-201ENST00000354363 RPRD2Q5VT52 1461 aaKnown RBP22.33■■□□□ 1.17
PRPF40A-201ENST00000354363 GCC2Q8IWJ2 1684 aa22.33■■□□□ 1.17
PRPF40A-201ENST00000354363 UNC13BO14795 1591 aa22.33■■□□□ 1.16
PRPF40A-201ENST00000354363 SLC52A1Q9NWF4 448 aa22.31■■□□□ 1.16
PRPF40A-201ENST00000354363 MED1Q15648 1581 aaPredicted RBP22.31■■□□□ 1.16
PRPF40A-201ENST00000354363 ROCK1Q13464 1354 aa22.27■■□□□ 1.16
PRPF40A-201ENST00000354363 E9PCH4 1651 aa22.26■■□□□ 1.15
PRPF40A-201ENST00000354363 SLC26A8Q96RN1 970 aa22.24■■□□□ 1.15
PRPF40A-201ENST00000354363 TMEM131LA2VDJ0 1609 aa22.24■■□□□ 1.15
PRPF40A-201ENST00000354363 IQGAP3Q86VI3 1631 aa22.24■■□□□ 1.15
PRPF40A-201ENST00000354363 KCNA6P17658 529 aa22.23■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 444.2 ms