RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 NUP155O75694 1391 aa14.72□□□□□ -0.05
SYNE1-202ENST00000347037 CHMP7Q8WUX9 453 aaPredicted RBP14.72□□□□□ -0.05
SYNE1-202ENST00000347037 SKAP1Q86WV1 359 aa14.71□□□□□ -0.05
SYNE1-202ENST00000347037 CDCA7LQ96GN5 454 aa14.71□□□□□ -0.05
SYNE1-202ENST00000347037 KIF14Q15058 1648 aa14.71□□□□□ -0.05
SYNE1-202ENST00000347037 LRPPRCP42704 1394 aaKnown RBP14.7□□□□□ -0.06
SYNE1-202ENST00000347037 PLB1Q6P1J6 1458 aa14.7□□□□□ -0.06
SYNE1-202ENST00000347037 ANKRD30AQ9BXX3 1397 aa14.7□□□□□ -0.06
SYNE1-202ENST00000347037 BACH2Q9BYV9 841 aa14.69□□□□□ -0.06
SYNE1-202ENST00000347037 ANO8Q9HCE9 1232 aaPredicted RBP14.68□□□□□ -0.06
SYNE1-202ENST00000347037 CC2D1BQ5T0F9 858 aaKnown RBP14.68□□□□□ -0.06
SYNE1-202ENST00000347037 ANKRD50Q9ULJ7 1429 aa14.68□□□□□ -0.06
SYNE1-202ENST00000347037 NLRP13Q86W25 1043 aa14.68□□□□□ -0.06
SYNE1-202ENST00000347037 KTN1Q86UP2 1357 aaKnown RBP14.67□□□□□ -0.06
SYNE1-202ENST00000347037 JPH4Q96JJ6 628 aa14.67□□□□□ -0.06
SYNE1-202ENST00000347037 RALGAPBQ86X10 1494 aa14.66□□□□□ -0.06
SYNE1-202ENST00000347037 RGL3Q3MIN7 710 aa14.65□□□□□ -0.06
SYNE1-202ENST00000347037 CRBNQ96SW2 442 aa14.65□□□□□ -0.06
SYNE1-202ENST00000347037 TROQ12816 1431 aaPredicted RBP14.65□□□□□ -0.06
SYNE1-202ENST00000347037 MS4A1P11836 297 aa14.64□□□□□ -0.07
SYNE1-202ENST00000347037 PDE3BQ13370 1112 aa14.64□□□□□ -0.07
SYNE1-202ENST00000347037 PPM1GO15355 546 aaPredicted RBP14.63□□□□□ -0.07
SYNE1-202ENST00000347037 GPATCH8Q9UKJ3 1502 aaKnown RBP14.63□□□□□ -0.07
SYNE1-202ENST00000347037 UHRF1BP1Q6BDS2 1440 aa14.63□□□□□ -0.07
SYNE1-202ENST00000347037 TSPY4P0CV99 314 aa14.62□□□□□ -0.07
SYNE1-202ENST00000347037 TSPY10P0CW01 314 aa14.62□□□□□ -0.07
SYNE1-202ENST00000347037 CDC42BPAQ5VT25 1732 aa14.62□□□□□ -0.07
SYNE1-202ENST00000347037 DAXXQ9UER7 740 aaPredicted RBP14.62□□□□□ -0.07
SYNE1-202ENST00000347037 SLC4A3P48751 1232 aa14.62□□□□□ -0.07
SYNE1-202ENST00000347037 FBLN2P98095 1184 aa14.61□□□□□ -0.07
SYNE1-202ENST00000347037 CARMIL2Q6F5E8 1435 aa14.61□□□□□ -0.07
SYNE1-202ENST00000347037 USP35Q9P2H5 1018 aa14.61□□□□□ -0.07
SYNE1-202ENST00000347037 ADGBQ8N7X0 1667 aa14.61□□□□□ -0.07
SYNE1-202ENST00000347037 ATP10BO94823 1461 aa14.6□□□□□ -0.07
SYNE1-202ENST00000347037 NBPF1Q3BBV0 1214 aa14.59□□□□□ -0.07
SYNE1-202ENST00000347037 DDRGK1Q96HY6 314 aa14.59□□□□□ -0.07
SYNE1-202ENST00000347037 ADGRL2O95490 1459 aa14.59□□□□□ -0.07
SYNE1-202ENST00000347037 HNRNPMP52272 730 aaKnown RBP eCLIP14.58□□□□□ -0.08
SYNE1-202ENST00000347037 C20orf194Q5TEA3 1177 aa14.58□□□□□ -0.08
SYNE1-202ENST00000347037 PARD3Q8TEW0 1356 aa14.58□□□□□ -0.08
SYNE1-202ENST00000347037 C9orf84Q5VXU9 1444 aa14.57□□□□□ -0.08
SYNE1-202ENST00000347037 PLEKHD1A6NEE1 506 aa14.57□□□□□ -0.08
SYNE1-202ENST00000347037 CROCC2H7BZ55 1655 aa14.57□□□□□ -0.08
SYNE1-202ENST00000347037 ITSN2Q9NZM3 1697 aa14.57□□□□□ -0.08
SYNE1-202ENST00000347037 ABCC10Q5T3U5 1492 aa14.57□□□□□ -0.08
SYNE1-202ENST00000347037 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.56□□□□□ -0.08
SYNE1-202ENST00000347037 PANK3Q9H999 370 aa14.56□□□□□ -0.08
SYNE1-202ENST00000347037 ARHGEF12Q9NZN5 1544 aa14.56□□□□□ -0.08
SYNE1-202ENST00000347037 PRKCSHP14314 528 aaPredicted RBP14.55□□□□□ -0.08
SYNE1-202ENST00000347037 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.55□□□□□ -0.08
SYNE1-202ENST00000347037 ABCC2Q92887 1545 aa14.55□□□□□ -0.08
SYNE1-202ENST00000347037 PER1O15534 1290 aaPredicted RBP14.54□□□□□ -0.08
SYNE1-202ENST00000347037 CDC42BPBQ9Y5S2 1711 aa14.54□□□□□ -0.08
SYNE1-202ENST00000347037 ZCCHC11Q5TAX3 1644 aaKnown RBP14.53□□□□□ -0.08
SYNE1-202ENST00000347037 UHRF1BP1LA0JNW5 1464 aa14.53□□□□□ -0.08
SYNE1-202ENST00000347037 BRPF3Q9ULD4 1205 aa14.53□□□□□ -0.08
SYNE1-202ENST00000347037 NFKBIBQ15653 356 aa14.53□□□□□ -0.08
SYNE1-202ENST00000347037 RGS3P49796 1198 aa14.52□□□□□ -0.09
SYNE1-202ENST00000347037 GSE1Q14687 1217 aa14.52□□□□□ -0.09
SYNE1-202ENST00000347037 ADAMTS8Q9UP79 889 aa14.51□□□□□ -0.09
SYNE1-202ENST00000347037 CCDC144AA2RUR9 1427 aa14.51□□□□□ -0.09
SYNE1-202ENST00000347037 DISP3Q9P2K9 1392 aa14.51□□□□□ -0.09
SYNE1-202ENST00000347037 E9PCH4 1651 aa14.5□□□□□ -0.09
SYNE1-202ENST00000347037 WDR43Q15061 677 aaKnown RBP eCLIP14.5□□□□□ -0.09
SYNE1-202ENST00000347037 WASHC2CQ9Y4E1 1318 aa14.5□□□□□ -0.09
SYNE1-202ENST00000347037 PREX2Q70Z35 1606 aa14.49□□□□□ -0.09
SYNE1-202ENST00000347037 PRAG1Q86YV5 1406 aa14.49□□□□□ -0.09
SYNE1-202ENST00000347037 TMF1P82094 1093 aa14.49□□□□□ -0.09
SYNE1-202ENST00000347037 PTPRGP23470 1445 aa14.48□□□□□ -0.09
SYNE1-202ENST00000347037 CENPQQ7L2Z9 268 aaPredicted RBP14.48□□□□□ -0.09
SYNE1-202ENST00000347037 FRAT1Q92837 279 aaPredicted RBP14.48□□□□□ -0.09
SYNE1-202ENST00000347037 TTC37Q6PGP7 1564 aa14.47□□□□□ -0.09
SYNE1-202ENST00000347037 BLMP54132 1417 aaPredicted RBP14.47□□□□□ -0.09
SYNE1-202ENST00000347037 FAM161AQ3B820 660 aa14.47□□□□□ -0.09
SYNE1-202ENST00000347037 TESK2Q96S53 571 aa14.46□□□□□ -0.09
SYNE1-202ENST00000347037 KNSTRNQ9Y448 316 aa14.45□□□□□ -0.1
SYNE1-202ENST00000347037 KDM5DQ9BY66 1539 aa14.45□□□□□ -0.1
SYNE1-202ENST00000347037 ERBINQ96RT1 1412 aa14.45□□□□□ -0.1
SYNE1-202ENST00000347037 KDM2BQ8NHM5 1336 aa14.45□□□□□ -0.1
SYNE1-202ENST00000347037 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.45□□□□□ -0.1
SYNE1-202ENST00000347037 SHANK2Q9UPX8 1470 aa14.44□□□□□ -0.1
SYNE1-202ENST00000347037 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.44□□□□□ -0.1
SYNE1-202ENST00000347037 COL17A1Q9UMD9 1497 aaPredicted RBP14.44□□□□□ -0.1
SYNE1-202ENST00000347037 FAM135AQ9P2D6 1515 aa14.44□□□□□ -0.1
SYNE1-202ENST00000347037 GOLGA2Q08379 1002 aa14.43□□□□□ -0.1
SYNE1-202ENST00000347037 CCDC146Q8IYE0 955 aa14.43□□□□□ -0.1
SYNE1-202ENST00000347037 C8orf34Q49A92 452 aa14.43□□□□□ -0.1
SYNE1-202ENST00000347037 DUSP27Q5VZP5 1158 aa14.43□□□□□ -0.1
SYNE1-202ENST00000347037 SAMD9LQ8IVG5 1584 aa14.43□□□□□ -0.1
SYNE1-202ENST00000347037 PLEKHH1Q9ULM0 1364 aa14.43□□□□□ -0.1
SYNE1-202ENST00000347037 ZMYM4Q5VZL5 1548 aa14.42□□□□□ -0.1
SYNE1-202ENST00000347037 FRAT2O75474 233 aaPredicted RBP14.42□□□□□ -0.1
SYNE1-202ENST00000347037 TRPM1Q7Z4N2 1603 aa14.42□□□□□ -0.1
SYNE1-202ENST00000347037 PPP2R1AP30153 589 aa14.41□□□□□ -0.1
SYNE1-202ENST00000347037 MYO5CQ9NQX4 1742 aa14.41□□□□□ -0.1
SYNE1-202ENST00000347037 PLEKHH2Q8IVE3 1493 aa14.4□□□□□ -0.1
SYNE1-202ENST00000347037 A2MP01023 1474 aa14.4□□□□□ -0.1
SYNE1-202ENST00000347037 EIF5BO60841 1220 aaKnown RBP14.39□□□□□ -0.11
SYNE1-202ENST00000347037 ARHGEF5Q12774 1597 aa14.39□□□□□ -0.11
SYNE1-202ENST00000347037 GPRASP1Q5JY77 1395 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms