RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 DIP2BQ9P265 1576 aa18.22■□□□□ 0.51
CLK3-201ENST00000345005 FAM69CQ0P6D2 419 aa18.21■□□□□ 0.51
CLK3-201ENST00000345005 MYT1LQ9UL68 1186 aa18.21■□□□□ 0.51
CLK3-201ENST00000345005 KDM5CP41229 1560 aa18.2■□□□□ 0.5
CLK3-201ENST00000345005 L3MBTL2Q969R5 705 aa18.2■□□□□ 0.5
CLK3-201ENST00000345005 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.2■□□□□ 0.53e-9■■■■■ 27.4
CLK3-201ENST00000345005 EIF2AK4Q9P2K8 1649 aaKnown RBP18.2■□□□□ 0.5
CLK3-201ENST00000345005 POGZQ7Z3K3 1410 aa18.19■□□□□ 0.5
CLK3-201ENST00000345005 DEPDC5O75140 1603 aa18.19■□□□□ 0.5
CLK3-201ENST00000345005 TEX14Q8IWB6 1497 aa18.18■□□□□ 0.5
CLK3-201ENST00000345005 DHX29Q7Z478 1369 aaKnown RBP18.17■□□□□ 0.5
CLK3-201ENST00000345005 MIER1Q8N108 512 aa18.16■□□□□ 0.5
CLK3-201ENST00000345005 HECW2Q9P2P5 1572 aa18.16■□□□□ 0.5
CLK3-201ENST00000345005 MLH3Q9UHC1 1453 aa18.16■□□□□ 0.5
CLK3-201ENST00000345005 RICTORQ6R327 1708 aa18.13■□□□□ 0.49
CLK3-201ENST00000345005 KANK1Q14678 1352 aa18.12■□□□□ 0.49
CLK3-201ENST00000345005 TSPOAP1O95153 1857 aa18.11■□□□□ 0.49
CLK3-201ENST00000345005 A2MP01023 1474 aa18.1■□□□□ 0.49
CLK3-201ENST00000345005 TET3O43151 1660 aa18.1■□□□□ 0.49
CLK3-201ENST00000345005 ATP10AO60312 1499 aa18.1■□□□□ 0.49
CLK3-201ENST00000345005 KIF3BO15066 747 aa18.09■□□□□ 0.49
CLK3-201ENST00000345005 VWDEQ8N2E2 1590 aa18.09■□□□□ 0.49
CLK3-201ENST00000345005 E9PCH4 1651 aa18.09■□□□□ 0.49
CLK3-201ENST00000345005 CCDC144AA2RUR9 1427 aa18.08■□□□□ 0.49
CLK3-201ENST00000345005 PRDM15P57071 1507 aaPredicted RBP18.08■□□□□ 0.48
CLK3-201ENST00000345005 PPRC1Q5VV67 1664 aaKnown RBP18.08■□□□□ 0.48
CLK3-201ENST00000345005 BCORL1Q5H9F3 1711 aa18.07■□□□□ 0.48
CLK3-201ENST00000345005 ABCA6Q8N139 1617 aa18.07■□□□□ 0.48
CLK3-201ENST00000345005 RNF17Q9BXT8 1623 aaKnown RBP18.07■□□□□ 0.48
CLK3-201ENST00000345005 YTHDC1Q96MU7 727 aaKnown RBP18.07■□□□□ 0.48
CLK3-201ENST00000345005 PLA2R1Q13018 1463 aa18.06■□□□□ 0.48
CLK3-201ENST00000345005 MROH1Q8NDA8 1641 aa18.06■□□□□ 0.48
CLK3-201ENST00000345005 RAPGEF3O95398 923 aa18.06■□□□□ 0.48
CLK3-201ENST00000345005 NBPF8Q3BBV2 869 aa18.05■□□□□ 0.48
CLK3-201ENST00000345005 SPHKAPQ2M3C7 1700 aa18.04■□□□□ 0.48
CLK3-201ENST00000345005 FRMPD1Q5SYB0 1578 aa18.02■□□□□ 0.48
CLK3-201ENST00000345005 UHRF1BP1Q6BDS2 1440 aa18.02■□□□□ 0.48
CLK3-201ENST00000345005 DIP2CQ9Y2E4 1556 aa18.02■□□□□ 0.48
CLK3-201ENST00000345005 EIF4G2P78344 907 aaKnown RBP eCLIP18.02■□□□□ 0.47
CLK3-201ENST00000345005 ZMYM4Q5VZL5 1548 aa18■□□□□ 0.47
CLK3-201ENST00000345005 HIRIP3Q9BW71 556 aaPredicted RBP18■□□□□ 0.47
CLK3-201ENST00000345005 TRPM2O94759 1503 aa18■□□□□ 0.47
CLK3-201ENST00000345005 CEP152O94986 1710 aa18■□□□□ 0.47
CLK3-201ENST00000345005 LMTK2Q8IWU2 1503 aa17.99■□□□□ 0.47
CLK3-201ENST00000345005 PTPRTO14522 1441 aa17.99■□□□□ 0.47
CLK3-201ENST00000345005 HSPA5P11021 654 aaKnown RBP17.98■□□□□ 0.47
CLK3-201ENST00000345005 DCAF11Q8TEB1 546 aa17.97■□□□□ 0.47
CLK3-201ENST00000345005 EFCAB6Q5THR3 1501 aa17.97■□□□□ 0.47
CLK3-201ENST00000345005 ZNF326Q5BKZ1 582 aaKnown RBP17.95■□□□□ 0.46
CLK3-201ENST00000345005 RALGAPBQ86X10 1494 aa17.94■□□□□ 0.46
CLK3-201ENST00000345005 KDM2AQ9Y2K7 1162 aa17.94■□□□□ 0.46
CLK3-201ENST00000345005 CLTCL1P53675 1640 aa17.93■□□□□ 0.46
CLK3-201ENST00000345005 YEATS2Q9ULM3 1422 aa17.93■□□□□ 0.46
CLK3-201ENST00000345005 DDX10Q13206 875 aaKnown RBP17.93■□□□□ 0.46
CLK3-201ENST00000345005 RGL3Q3MIN7 710 aa17.93■□□□□ 0.46
CLK3-201ENST00000345005 GGT6Q6P531 493 aa17.93■□□□□ 0.46
CLK3-201ENST00000345005 POLR1AO95602 1720 aaPredicted RBP17.92■□□□□ 0.46
CLK3-201ENST00000345005 KIF1BO60333 1816 aa17.92■□□□□ 0.46
CLK3-201ENST00000345005 CFAP65Q6ZU64 1925 aaKnown RBP17.92■□□□□ 0.46
CLK3-201ENST00000345005 SPATA31E1Q6ZUB1 1445 aa17.91■□□□□ 0.46
CLK3-201ENST00000345005 ZC3H13Q5T200 1668 aaKnown RBP17.91■□□□□ 0.46
CLK3-201ENST00000345005 NEURL4Q96JN8 1562 aa17.9■□□□□ 0.46
CLK3-201ENST00000345005 COL17A1Q9UMD9 1497 aaPredicted RBP17.9■□□□□ 0.46
CLK3-201ENST00000345005 TRPM1Q7Z4N2 1603 aa17.9■□□□□ 0.46
CLK3-201ENST00000345005 ABCC3O15438 1527 aa17.89■□□□□ 0.45
CLK3-201ENST00000345005 PRAG1Q86YV5 1406 aa17.89■□□□□ 0.45
CLK3-201ENST00000345005 WASHC2CQ9Y4E1 1318 aa17.89■□□□□ 0.45
CLK3-201ENST00000345005 REREQ9P2R6 1566 aa17.89■□□□□ 0.45
CLK3-201ENST00000345005 CAMSAP1Q5T5Y3 1602 aa17.89■□□□□ 0.45
CLK3-201ENST00000345005 STAC3Q96MF2 364 aa17.88■□□□□ 0.45
CLK3-201ENST00000345005 USP47Q96K76 1375 aa17.85■□□□□ 0.45
CLK3-201ENST00000345005 CARD11Q9BXL7 1154 aa17.85■□□□□ 0.45
CLK3-201ENST00000345005 NPATQ14207 1427 aa17.84■□□□□ 0.45
CLK3-201ENST00000345005 LAMC1P11047 1609 aa17.84■□□□□ 0.45
CLK3-201ENST00000345005 WASHC2AQ641Q2 1341 aa17.84■□□□□ 0.45
CLK3-201ENST00000345005 AGLP35573 1532 aa17.83■□□□□ 0.45
CLK3-201ENST00000345005 ROCK2O75116 1388 aaKnown RBP17.83■□□□□ 0.44
CLK3-201ENST00000345005 CNTLNQ9NXG0 1405 aa17.82■□□□□ 0.44
CLK3-201ENST00000345005 ARHGAP31Q2M1Z3 1444 aa17.82■□□□□ 0.44
CLK3-201ENST00000345005 CCDC7Q96M83 1385 aa17.81■□□□□ 0.44
CLK3-201ENST00000345005 PPP6R1Q9UPN7 881 aa17.8■□□□□ 0.44
CLK3-201ENST00000345005 MADDQ8WXG6 1647 aa17.8■□□□□ 0.44
CLK3-201ENST00000345005 UGGT1Q9NYU2 1555 aa17.8■□□□□ 0.44
CLK3-201ENST00000345005 ARHGEF40Q8TER5 1519 aa17.8■□□□□ 0.44
CLK3-201ENST00000345005 GPRASP1Q5JY77 1395 aa17.8■□□□□ 0.44
CLK3-201ENST00000345005 SIGLEC1Q9BZZ2 1709 aa17.79■□□□□ 0.44
CLK3-201ENST00000345005 IFT172Q9UG01 1749 aa17.79■□□□□ 0.44
CLK3-201ENST00000345005 NOS1P29475 1434 aa17.78■□□□□ 0.44
CLK3-201ENST00000345005 ARID4BQ4LE39 1312 aaPredicted RBP17.77■□□□□ 0.44
CLK3-201ENST00000345005 C11orf95C9JLR9 678 aaPredicted RBP17.77■□□□□ 0.44
CLK3-201ENST00000345005 MROH2AA6NES4 1674 aa17.77■□□□□ 0.44
CLK3-201ENST00000345005 KIAA1210Q9ULL0 1709 aa17.77■□□□□ 0.44
CLK3-201ENST00000345005 SUPT16HQ9Y5B9 1047 aaKnown RBP17.77■□□□□ 0.43
CLK3-201ENST00000345005 PIK3C2BO00750 1634 aa17.75■□□□□ 0.43
CLK3-201ENST00000345005 ANP32CO43423 234 aa17.75■□□□□ 0.43
CLK3-201ENST00000345005 ADGRB3O60242 1522 aa17.75■□□□□ 0.43
CLK3-201ENST00000345005 PREX1Q8TCU6 1659 aa17.75■□□□□ 0.43
CLK3-201ENST00000345005 NBPF1Q3BBV0 1214 aa17.75■□□□□ 0.43
CLK3-201ENST00000345005 MYOM2P54296 1465 aa17.74■□□□□ 0.43
CLK3-201ENST00000345005 KIF7Q2M1P5 1343 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 305.8 ms