RNA–Protein interactions for RNA: ENST00000344722.5

SMC4-201, Transcript of structural maintenance of chromosomes 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC4, Length 5,356 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-201ENST00000344722 CCDC7Q96M83 1385 aa22.43■■□□□ 1.18
SMC4-201ENST00000344722 ZNF771Q7L3S4 317 aaPredicted RBP22.42■■□□□ 1.18
SMC4-201ENST00000344722 USP47Q96K76 1375 aa22.42■■□□□ 1.18
SMC4-201ENST00000344722 HMMRO75330 724 aa22.41■■□□□ 1.18
SMC4-201ENST00000344722 KIF16BQ96L93 1317 aa22.41■■□□□ 1.18
SMC4-201ENST00000344722 ST20-MTHFSA0A0A6YYL1 179 aa22.4■■□□□ 1.18
SMC4-201ENST00000344722 GOLGA6L1Q8N7Z2 621 aa22.4■■□□□ 1.18
SMC4-201ENST00000344722 RUSC2Q8N2Y8 1516 aa22.4■■□□□ 1.18
SMC4-201ENST00000344722 SRPK2P78362 688 aaKnown RBP22.4■■□□□ 1.18
SMC4-201ENST00000344722 TAOK2Q9UL54 1235 aa22.38■■□□□ 1.17
SMC4-201ENST00000344722 COG6Q9Y2V7 657 aa22.37■■□□□ 1.17
SMC4-201ENST00000344722 PANK3Q9H999 370 aa22.37■■□□□ 1.17
SMC4-201ENST00000344722 ZKSCAN2Q63HK3 967 aa22.36■■□□□ 1.17
SMC4-201ENST00000344722 NGEFQ8N5V2 710 aa22.36■■□□□ 1.17
SMC4-201ENST00000344722 MSH5O43196 834 aa22.35■■□□□ 1.17
SMC4-201ENST00000344722 FHOD3Q2V2M9 1422 aa22.35■■□□□ 1.17
SMC4-201ENST00000344722 HDGFL2Q7Z4V5 671 aaPredicted RBP22.34■■□□□ 1.17
SMC4-201ENST00000344722 ATP6V1DQ9Y5K8 247 aa22.34■■□□□ 1.17
SMC4-201ENST00000344722 AAMPQ13685 434 aa22.34■■□□□ 1.17
SMC4-201ENST00000344722 FRAT2O75474 233 aaPredicted RBP22.33■■□□□ 1.17
SMC4-201ENST00000344722 TRIM6-TRIM34B2RNG4 842 aa22.33■■□□□ 1.17
SMC4-201ENST00000344722 RTF1Q92541 710 aaKnown RBP22.33■■□□□ 1.17
SMC4-201ENST00000344722 FOXD4L5Q5VV16 416 aaPredicted RBP22.33■■□□□ 1.16
SMC4-201ENST00000344722 FOXD4L4Q8WXT5 416 aaPredicted RBP22.33■■□□□ 1.16
SMC4-201ENST00000344722 KIF7Q2M1P5 1343 aa22.32■■□□□ 1.16
SMC4-201ENST00000344722 GNL2Q13823 731 aaKnown RBP22.32■■□□□ 1.16
SMC4-201ENST00000344722 BACH2Q9BYV9 841 aa22.32■■□□□ 1.16
SMC4-201ENST00000344722 NOL8Q76FK4 1167 aaKnown RBP22.31■■□□□ 1.16
SMC4-201ENST00000344722 NUCB2P80303 420 aa22.3■■□□□ 1.16
SMC4-201ENST00000344722 ANKRD45Q5TZF3 282 aa22.3■■□□□ 1.16
SMC4-201ENST00000344722 TRAK2O60296 914 aa22.29■■□□□ 1.16
SMC4-201ENST00000344722 PLPPR3Q6T4P5 718 aa22.29■■□□□ 1.16
SMC4-201ENST00000344722 NASPP49321 788 aaPredicted RBP22.29■■□□□ 1.16
SMC4-201ENST00000344722 C22orf23Q9BZE7 217 aa22.29■■□□□ 1.16
SMC4-201ENST00000344722 R3HCC1Q9Y3T6 440 aaKnown RBP22.29■■□□□ 1.16
SMC4-201ENST00000344722 WASHC2AQ641Q2 1341 aa22.29■■□□□ 1.16
SMC4-201ENST00000344722 UACAQ9BZF9 1416 aa22.28■■□□□ 1.16
SMC4-201ENST00000344722 CCDC39Q9UFE4 941 aa22.28■■□□□ 1.16
SMC4-201ENST00000344722 BRD4O60885 1362 aaPredicted RBP22.28■■□□□ 1.16
SMC4-201ENST00000344722 RRP9O43818 475 aaKnown RBP22.27■■□□□ 1.16
SMC4-201ENST00000344722 DDX19BQ9UMR2 479 aa22.27■■□□□ 1.16
SMC4-201ENST00000344722 ISY1Q9ULR0 285 aaKnown RBP22.26■■□□□ 1.15
SMC4-201ENST00000344722 SMARCA2P51531 1590 aa22.25■■□□□ 1.15
SMC4-201ENST00000344722 GPATCH3Q96I76 525 aa22.25■■□□□ 1.15
SMC4-201ENST00000344722 BCL2L13Q9BXK5 485 aa22.24■■□□□ 1.15
SMC4-201ENST00000344722 KIF21BO75037 1637 aa22.24■■□□□ 1.15
SMC4-201ENST00000344722 SMG6Q86US8 1419 aaKnown RBP22.24■■□□□ 1.15
SMC4-201ENST00000344722 CCDC173Q0VFZ6 552 aa22.23■■□□□ 1.15
SMC4-201ENST00000344722 RRP7AQ9Y3A4 280 aaKnown RBP22.23■■□□□ 1.15
SMC4-201ENST00000344722 GOLGA6L19H0YKK7 550 aa22.23■■□□□ 1.15
SMC4-201ENST00000344722 LMOD3Q0VAK6 560 aa22.23■■□□□ 1.15
SMC4-201ENST00000344722 APAF1O14727 1248 aa22.22■■□□□ 1.15
SMC4-201ENST00000344722 REC8O95072 547 aa22.22■■□□□ 1.15
SMC4-201ENST00000344722 STK31Q9BXU1 1019 aa22.22■■□□□ 1.15
SMC4-201ENST00000344722 TEX35Q5T0J7 233 aa22.22■■□□□ 1.15
SMC4-201ENST00000344722 GPS2Q13227 327 aa22.21■■□□□ 1.15
SMC4-201ENST00000344722 SETQ01105 290 aaPredicted RBP22.21■■□□□ 1.15
SMC4-201ENST00000344722 DIAPH3Q9NSV4 1193 aa22.21■■□□□ 1.15
SMC4-201ENST00000344722 SAFB2Q14151 953 aaKnown RBP eCLIP22.21■■□□□ 1.15
SMC4-201ENST00000344722 CCDC34Q96HJ3 373 aa22.2■■□□□ 1.14
SMC4-201ENST00000344722 DZIP1LQ8IYY4 767 aaKnown RBP22.2■■□□□ 1.14
SMC4-201ENST00000344722 AKNAQ7Z591 1439 aa22.2■■□□□ 1.14
SMC4-201ENST00000344722 HSP90B1P14625 803 aaKnown RBP22.2■■□□□ 1.14
SMC4-201ENST00000344722 MCTP1Q6DN14 999 aa22.2■■□□□ 1.14
SMC4-201ENST00000344722 RRBP1Q9P2E9 1410 aaKnown RBP22.19■■□□□ 1.14
SMC4-201ENST00000344722 CHMP4AQ9BY43 222 aa22.19■■□□□ 1.14
SMC4-201ENST00000344722 KIF3AQ9Y496 699 aa22.19■■□□□ 1.14
SMC4-201ENST00000344722 CCDC144AA2RUR9 1427 aa22.18■■□□□ 1.14
SMC4-201ENST00000344722 PLEKHG5O94827 1062 aa22.17■■□□□ 1.14
SMC4-201ENST00000344722 ZNF592Q92610 1267 aa22.17■■□□□ 1.14
SMC4-201ENST00000344722 BECN2A8MW95 431 aa22.16■■□□□ 1.14
SMC4-201ENST00000344722 HDAC5Q9UQL6 1122 aa22.16■■□□□ 1.14
SMC4-201ENST00000344722 TERF2IPQ9NYB0 399 aa22.16■■□□□ 1.14
SMC4-201ENST00000344722 SPAG9O60271 1321 aaKnown RBP22.15■■□□□ 1.14
SMC4-201ENST00000344722 RSPH4AQ5TD94 716 aa22.13■■□□□ 1.13
SMC4-201ENST00000344722 TPM3P06753 285 aa22.13■■□□□ 1.13
SMC4-201ENST00000344722 FOXD4L6Q3SYB3 417 aaPredicted RBP22.13■■□□□ 1.13
SMC4-201ENST00000344722 FOXD4L3Q6VB84 417 aaPredicted RBP22.13■■□□□ 1.13
SMC4-201ENST00000344722 FGD6Q6ZV73 1430 aa22.13■■□□□ 1.13
SMC4-201ENST00000344722 HMGN5P82970 282 aaKnown RBP22.13■■□□□ 1.13
SMC4-201ENST00000344722 NOC3LQ8WTT2 800 aaKnown RBP22.13■■□□□ 1.13
SMC4-201ENST00000344722 SLC4A10Q6U841 1118 aa22.12■■□□□ 1.13
SMC4-201ENST00000344722 MIA2Q96PC5 1412 aa22.11■■□□□ 1.13
SMC4-201ENST00000344722 GRPEL1Q9HAV7 217 aa22.11■■□□□ 1.13
SMC4-201ENST00000344722 CARMIL2Q6F5E8 1435 aa22.1■■□□□ 1.13
SMC4-201ENST00000344722 A0A0U1RQG5 324 aaPredicted RBP22.1■■□□□ 1.13
SMC4-201ENST00000344722 RILPL2Q969X0 211 aa22.1■■□□□ 1.13
SMC4-201ENST00000344722 INTS3Q68E01 1043 aaKnown RBP22.1■■□□□ 1.13
SMC4-201ENST00000344722 STK26Q9P289 416 aa22.1■■□□□ 1.13
SMC4-201ENST00000344722 CCDC66A2RUB6 948 aa22.09■■□□□ 1.13
SMC4-201ENST00000344722 SF3A1Q15459 793 aaKnown RBP22.09■■□□□ 1.13
SMC4-201ENST00000344722 LRRC9Q6ZRR7 1453 aa22.09■■□□□ 1.13
SMC4-201ENST00000344722 H3BQV1 296 aa22.08■■□□□ 1.13
SMC4-201ENST00000344722 RBM10P98175 930 aaKnown RBP22.08■■□□□ 1.13
SMC4-201ENST00000344722 IFFO2Q5TF58 517 aa22.08■■□□□ 1.13
SMC4-201ENST00000344722 UBE2Q2Q8WVN8 375 aa22.08■■□□□ 1.12
SMC4-201ENST00000344722 ESPNB1AK53 854 aa22.07■■□□□ 1.12
SMC4-201ENST00000344722 CUX1P39880 1505 aa22.07■■□□□ 1.12
SMC4-201ENST00000344722 CHMP4CQ96CF2 233 aa22.07■■□□□ 1.12
SMC4-201ENST00000344722 ARGLU1Q9NWB6 273 aaPredicted RBP22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms