RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 SLC4A1APQ9BWU0 796 aaKnown RBP16.03■□□□□ 0.16
RTN3-203ENST00000341307 USP35Q9P2H5 1018 aa16.03■□□□□ 0.16
RTN3-203ENST00000341307 ABCA9Q8IUA7 1624 aa16.03■□□□□ 0.16
RTN3-203ENST00000341307 ADGBQ8N7X0 1667 aa16.03■□□□□ 0.16
RTN3-203ENST00000341307 CDC42BPBQ9Y5S2 1711 aa16.02■□□□□ 0.16
RTN3-203ENST00000341307 RAPGEF3O95398 923 aa16.02■□□□□ 0.16
RTN3-203ENST00000341307 NEFMP07197 916 aa16.02■□□□□ 0.15
RTN3-203ENST00000341307 ANKRD30AQ9BXX3 1397 aa16.01■□□□□ 0.15
RTN3-203ENST00000341307 SAMD9LQ8IVG5 1584 aa16■□□□□ 0.15
RTN3-203ENST00000341307 C9orf84Q5VXU9 1444 aa16■□□□□ 0.15
RTN3-203ENST00000341307 ADGRL2O95490 1459 aa16■□□□□ 0.15
RTN3-203ENST00000341307 PREX2Q70Z35 1606 aa15.99■□□□□ 0.15
RTN3-203ENST00000341307 TSPY4P0CV99 314 aa15.99■□□□□ 0.15
RTN3-203ENST00000341307 TSPY10P0CW01 314 aa15.99■□□□□ 0.15
RTN3-203ENST00000341307 PLCH2O75038 1416 aa15.98■□□□□ 0.15
RTN3-203ENST00000341307 MBD5Q9P267 1494 aa15.98■□□□□ 0.15
RTN3-203ENST00000341307 ANKRD50Q9ULJ7 1429 aa15.98■□□□□ 0.15
RTN3-203ENST00000341307 FANCAO15360 1455 aa15.97■□□□□ 0.15
RTN3-203ENST00000341307 PZPP20742 1482 aa15.97■□□□□ 0.15
RTN3-203ENST00000341307 ARHGAP5Q13017 1502 aa15.97■□□□□ 0.15
RTN3-203ENST00000341307 ANKRD30BQ9BXX2 1392 aa15.97■□□□□ 0.15
RTN3-203ENST00000341307 ANP32CO43423 234 aa15.96■□□□□ 0.15
RTN3-203ENST00000341307 L3MBTL2Q969R5 705 aa15.96■□□□□ 0.14
RTN3-203ENST00000341307 LAS1LQ9Y4W2 734 aaKnown RBP15.95■□□□□ 0.14
RTN3-203ENST00000341307 SYCP2Q9BX26 1530 aa15.95■□□□□ 0.14
RTN3-203ENST00000341307 EFCAB2Q5VUJ9 269 aa15.95■□□□□ 0.14
RTN3-203ENST00000341307 AFAP1Q8N556 730 aa15.95■□□□□ 0.14
RTN3-203ENST00000341307 SHANK2Q9UPX8 1470 aa15.94■□□□□ 0.14
RTN3-203ENST00000341307 HNRNPUQ00839 825 aaKnown RBP eCLIP15.94■□□□□ 0.14
RTN3-203ENST00000341307 KIF15Q9NS87 1388 aa15.93■□□□□ 0.14
RTN3-203ENST00000341307 FAM43AQ8N2R8 423 aa15.93■□□□□ 0.14
RTN3-203ENST00000341307 CCDC141Q6ZP82 1450 aa15.92■□□□□ 0.14
RTN3-203ENST00000341307 TEX14Q8IWB6 1497 aa15.92■□□□□ 0.14
RTN3-203ENST00000341307 ARHGEF5Q12774 1597 aa15.92■□□□□ 0.14
RTN3-203ENST00000341307 GSE1Q14687 1217 aa15.92■□□□□ 0.14
RTN3-203ENST00000341307 PKD2Q13563 968 aa15.92■□□□□ 0.14
RTN3-203ENST00000341307 MYO5CQ9NQX4 1742 aa15.91■□□□□ 0.14
RTN3-203ENST00000341307 SCAPERQ9BY12 1400 aa15.91■□□□□ 0.14
RTN3-203ENST00000341307 NUP155O75694 1391 aa15.91■□□□□ 0.14
RTN3-203ENST00000341307 RPRD2Q5VT52 1461 aaKnown RBP15.9■□□□□ 0.14
RTN3-203ENST00000341307 ARHGEF12Q9NZN5 1544 aa15.9■□□□□ 0.14
RTN3-203ENST00000341307 ADGRL1O94910 1474 aa15.89■□□□□ 0.13
RTN3-203ENST00000341307 KIAA1107Q9UPP5 1409 aa15.87■□□□□ 0.13
RTN3-203ENST00000341307 TRAPPC8Q9Y2L5 1435 aa15.87■□□□□ 0.13
RTN3-203ENST00000341307 NBPF8Q3BBV2 869 aa15.87■□□□□ 0.13
RTN3-203ENST00000341307 NEO1Q92859 1461 aa15.86■□□□□ 0.13
RTN3-203ENST00000341307 RSPH4AQ5TD94 716 aa15.85■□□□□ 0.13
RTN3-203ENST00000341307 PPM1GO15355 546 aaPredicted RBP15.84■□□□□ 0.13
RTN3-203ENST00000341307 HSPA5P11021 654 aaKnown RBP15.84■□□□□ 0.13
RTN3-203ENST00000341307 FRAT1Q92837 279 aaPredicted RBP15.84■□□□□ 0.13
RTN3-203ENST00000341307 ARAP3Q8WWN8 1544 aa15.83■□□□□ 0.12
RTN3-203ENST00000341307 A0A0U1RQG5 324 aaPredicted RBP15.83■□□□□ 0.12
RTN3-203ENST00000341307 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.83■□□□□ 0.12
RTN3-203ENST00000341307 FRMPD1Q5SYB0 1578 aa15.81■□□□□ 0.12
RTN3-203ENST00000341307 RBM10P98175 930 aaKnown RBP15.81■□□□□ 0.12
RTN3-203ENST00000341307 ZNF326Q5BKZ1 582 aaKnown RBP15.81■□□□□ 0.12
RTN3-203ENST00000341307 AAMPQ13685 434 aa15.8■□□□□ 0.12
RTN3-203ENST00000341307 YEATS2Q9ULM3 1422 aa15.8■□□□□ 0.12
RTN3-203ENST00000341307 ABCC1P33527 1531 aa15.79■□□□□ 0.12
RTN3-203ENST00000341307 PLEKHH2Q8IVE3 1493 aa15.79■□□□□ 0.12
RTN3-203ENST00000341307 POGZQ7Z3K3 1410 aa15.79■□□□□ 0.12
RTN3-203ENST00000341307 MAST1Q9Y2H9 1570 aa15.79■□□□□ 0.12
RTN3-203ENST00000341307 FGD1P98174 961 aa15.78■□□□□ 0.12
RTN3-203ENST00000341307 DCAF11Q8TEB1 546 aa15.78■□□□□ 0.12
RTN3-203ENST00000341307 KDM5DQ9BY66 1539 aa15.78■□□□□ 0.12
RTN3-203ENST00000341307 EIF4G2P78344 907 aaKnown RBP eCLIP15.78■□□□□ 0.12
RTN3-203ENST00000341307 FAM135AQ9P2D6 1515 aa15.78■□□□□ 0.12
RTN3-203ENST00000341307 HSP90AA2PQ14568 343 aaPredicted RBP15.77■□□□□ 0.12
RTN3-203ENST00000341307 NPM2Q86SE8 214 aaKnown RBP15.76■□□□□ 0.11
RTN3-203ENST00000341307 RICTORQ6R327 1708 aa15.76■□□□□ 0.11
RTN3-203ENST00000341307 RRP9O43818 475 aaKnown RBP15.75■□□□□ 0.11
RTN3-203ENST00000341307 PLXNC1O60486 1568 aa15.75■□□□□ 0.11
RTN3-203ENST00000341307 CFAP74Q9C0B2 1584 aa15.75■□□□□ 0.11
RTN3-203ENST00000341307 SPAG9O60271 1321 aaKnown RBP15.74■□□□□ 0.11
RTN3-203ENST00000341307 ZNF518AQ6AHZ1 1483 aa15.74■□□□□ 0.11
RTN3-203ENST00000341307 RRAGDQ9NQL2 400 aaPredicted RBP15.73■□□□□ 0.11
RTN3-203ENST00000341307 MLECQ14165 292 aa15.72■□□□□ 0.11
RTN3-203ENST00000341307 NFKBIBQ15653 356 aa15.72■□□□□ 0.11
RTN3-203ENST00000341307 KDM2AQ9Y2K7 1162 aa15.72■□□□□ 0.11
RTN3-203ENST00000341307 ARID4BQ4LE39 1312 aaPredicted RBP15.71■□□□□ 0.11
RTN3-203ENST00000341307 DUOX2Q9NRD8 1548 aa15.71■□□□□ 0.11
RTN3-203ENST00000341307 UNC13BO14795 1591 aa15.71■□□□□ 0.11
RTN3-203ENST00000341307 PDE4CQ08493 712 aa15.7■□□□□ 0.1
RTN3-203ENST00000341307 KDM5CP41229 1560 aa15.68■□□□□ 0.1
RTN3-203ENST00000341307 SIGLEC1Q9BZZ2 1709 aa15.68■□□□□ 0.1
RTN3-203ENST00000341307 ZFYVE16Q7Z3T8 1539 aa15.68■□□□□ 0.1
RTN3-203ENST00000341307 RGL3Q3MIN7 710 aa15.67■□□□□ 0.1
RTN3-203ENST00000341307 ERBINQ96RT1 1412 aa15.67■□□□□ 0.1
RTN3-203ENST00000341307 PLA2R1Q13018 1463 aa15.67■□□□□ 0.1
RTN3-203ENST00000341307 SPATA31E1Q6ZUB1 1445 aa15.66■□□□□ 0.1
RTN3-203ENST00000341307 KIDINS220Q9ULH0 1771 aa15.66■□□□□ 0.1
RTN3-203ENST00000341307 IQGAP3Q86VI3 1631 aa15.66■□□□□ 0.1
RTN3-203ENST00000341307 PLPPR3Q6T4P5 718 aa15.65■□□□□ 0.1
RTN3-203ENST00000341307 CCDC144AA2RUR9 1427 aa15.65■□□□□ 0.1
RTN3-203ENST00000341307 HSP90AA1P07900 732 aaKnown RBP15.65■□□□□ 0.1
RTN3-203ENST00000341307 MLH3Q9UHC1 1453 aa15.65■□□□□ 0.1
RTN3-203ENST00000341307 ZMYM4Q5VZL5 1548 aa15.65■□□□□ 0.1
RTN3-203ENST00000341307 ABCA6Q8N139 1617 aa15.64■□□□□ 0.09
RTN3-203ENST00000341307 HECW2Q9P2P5 1572 aa15.64■□□□□ 0.09
RTN3-203ENST00000341307 KDM4FA0A1W2PPD8 638 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms