RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 CROCC2H7BZ55 1655 aa23.9■■□□□ 1.42
VAPA-201ENST00000340541 ABCC5O15440 1437 aa23.9■■□□□ 1.42
VAPA-201ENST00000340541 DNMT1P26358 1616 aaKnown RBP23.89■■□□□ 1.42
VAPA-201ENST00000340541 CAMSAP1Q5T5Y3 1602 aa23.88■■□□□ 1.41
VAPA-201ENST00000340541 PKD2Q13563 968 aa23.87■■□□□ 1.41
VAPA-201ENST00000340541 SHANK2Q9UPX8 1470 aa23.87■■□□□ 1.41
VAPA-201ENST00000340541 DAPK1P53355 1430 aa23.86■■□□□ 1.41
VAPA-201ENST00000340541 PLA2R1Q13018 1463 aa23.84■■□□□ 1.41
VAPA-201ENST00000340541 IQSEC2Q5JU85 1478 aa23.84■■□□□ 1.41
VAPA-201ENST00000340541 FAM135AQ9P2D6 1515 aa23.84■■□□□ 1.41
VAPA-201ENST00000340541 ZNF142P52746 1687 aaPredicted RBP23.83■■□□□ 1.41
VAPA-201ENST00000340541 KIF3BO15066 747 aa23.83■■□□□ 1.41
VAPA-201ENST00000340541 PPARGC1BQ86YN6 1023 aaKnown RBP23.83■■□□□ 1.41
VAPA-201ENST00000340541 LTBP4Q8N2S1 1624 aa23.83■■□□□ 1.41
VAPA-201ENST00000340541 NCKAP5LQ9HCH0 1330 aa23.81■■□□□ 1.4
VAPA-201ENST00000340541 MYO3AQ8NEV4 1616 aa23.81■■□□□ 1.4
VAPA-201ENST00000340541 CEP170BQ9Y4F5 1589 aaPredicted RBP23.8■■□□□ 1.4
VAPA-201ENST00000340541 WASHC2CQ9Y4E1 1318 aa23.77■■□□□ 1.4
VAPA-201ENST00000340541 A2ML1A8K2U0 1454 aa23.76■■□□□ 1.39
VAPA-201ENST00000340541 DUOX2Q9NRD8 1548 aa23.76■■□□□ 1.39
VAPA-201ENST00000340541 FAM50AQ14320 339 aaKnown RBP23.76■■□□□ 1.39
VAPA-201ENST00000340541 EIF2AK4Q9P2K8 1649 aaKnown RBP23.76■■□□□ 1.39
VAPA-201ENST00000340541 KIF15Q9NS87 1388 aa23.75■■□□□ 1.39
VAPA-201ENST00000340541 KDM5DQ9BY66 1539 aa23.74■■□□□ 1.39
VAPA-201ENST00000340541 RNF17Q9BXT8 1623 aaKnown RBP23.74■■□□□ 1.39
VAPA-201ENST00000340541 PZPP20742 1482 aa23.74■■□□□ 1.39
VAPA-201ENST00000340541 TNRQ92752 1358 aa23.72■■□□□ 1.39
VAPA-201ENST00000340541 ADGRL2O95490 1459 aa23.72■■□□□ 1.39
VAPA-201ENST00000340541 FBXO31Q5XUX0 539 aaPredicted RBP23.71■■□□□ 1.39
VAPA-201ENST00000340541 RRP7BPQ9NSQ0 103 aa23.71■■□□□ 1.39
VAPA-201ENST00000340541 CHIC2Q9UKJ5 165 aa23.71■■□□□ 1.39
VAPA-201ENST00000340541 MROH1Q8NDA8 1641 aa23.7■■□□□ 1.39
VAPA-201ENST00000340541 ERBINQ96RT1 1412 aa23.69■■□□□ 1.38
VAPA-201ENST00000340541 ANKRD30AQ9BXX3 1397 aa23.69■■□□□ 1.38
VAPA-201ENST00000340541 ZNF335Q9H4Z2 1342 aaPredicted RBP23.69■■□□□ 1.38
VAPA-201ENST00000340541 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.67■■□□□ 1.383e-6■□□□□ 9.1
VAPA-201ENST00000340541 THEMISQ8N1K5 641 aaPredicted RBP23.67■■□□□ 1.38
VAPA-201ENST00000340541 NLRP1Q9C000 1473 aa23.65■■□□□ 1.38
VAPA-201ENST00000340541 RRBP1Q9P2E9 1410 aaKnown RBP23.64■■□□□ 1.37
VAPA-201ENST00000340541 ANKLE2Q86XL3 938 aa23.63■■□□□ 1.37
VAPA-201ENST00000340541 ABCC3O15438 1527 aa23.63■■□□□ 1.37
VAPA-201ENST00000340541 DEPDC5O75140 1603 aa23.62■■□□□ 1.37
VAPA-201ENST00000340541 ZC3H13Q5T200 1668 aaKnown RBP23.62■■□□□ 1.37
VAPA-201ENST00000340541 PRDM15P57071 1507 aaPredicted RBP23.62■■□□□ 1.37
VAPA-201ENST00000340541 UBAP1LF5GYI3 381 aa23.58■■□□□ 1.37
VAPA-201ENST00000340541 CEP152O94986 1710 aa23.58■■□□□ 1.37
VAPA-201ENST00000340541 UGGT1Q9NYU2 1555 aa23.57■■□□□ 1.36
VAPA-201ENST00000340541 ROCK1Q13464 1354 aa23.57■■□□□ 1.36
VAPA-201ENST00000340541 POLR1AO95602 1720 aaPredicted RBP23.57■■□□□ 1.36
VAPA-201ENST00000340541 DISP3Q9P2K9 1392 aa23.56■■□□□ 1.36
VAPA-201ENST00000340541 ANKRD50Q9ULJ7 1429 aa23.55■■□□□ 1.36
VAPA-201ENST00000340541 MED14O60244 1454 aa23.55■■□□□ 1.36
VAPA-201ENST00000340541 VWDEQ8N2E2 1590 aa23.54■■□□□ 1.36
VAPA-201ENST00000340541 NEURL4Q96JN8 1562 aa23.54■■□□□ 1.36
VAPA-201ENST00000340541 CPS1P31327 1500 aa23.54■■□□□ 1.36
VAPA-201ENST00000340541 SPATA31D1Q6ZQQ2 1576 aa23.53■■□□□ 1.36
VAPA-201ENST00000340541 ITGAEP38570 1179 aa23.52■■□□□ 1.36
VAPA-201ENST00000340541 ERVK-7P63135 1459 aa23.49■■□□□ 1.35
VAPA-201ENST00000340541 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.49■■□□□ 1.355e-10■□□□□ 10.1
VAPA-201ENST00000340541 NPHP4O75161 1426 aaPredicted RBP23.49■■□□□ 1.35
VAPA-201ENST00000340541 LMTK2Q8IWU2 1503 aa23.49■■□□□ 1.35
VAPA-201ENST00000340541 TOM1O60784 492 aa23.48■■□□□ 1.35
VAPA-201ENST00000340541 ARHGAP31Q2M1Z3 1444 aa23.48■■□□□ 1.35
VAPA-201ENST00000340541 KANK1Q14678 1352 aa23.46■■□□□ 1.35
VAPA-201ENST00000340541 UNC13BO14795 1591 aa23.45■■□□□ 1.34
VAPA-201ENST00000340541 CFAP65Q6ZU64 1925 aaKnown RBP23.43■■□□□ 1.34
VAPA-201ENST00000340541 ILDR2Q71H61 639 aa23.43■■□□□ 1.34
VAPA-201ENST00000340541 EFCAB6Q5THR3 1501 aa23.41■■□□□ 1.34
VAPA-201ENST00000340541 IQGAP1P46940 1657 aa23.41■■□□□ 1.34
VAPA-201ENST00000340541 SOCS7O14512 581 aa23.39■■□□□ 1.33
VAPA-201ENST00000340541 UBR1Q8IWV7 1749 aa23.37■■□□□ 1.33
VAPA-201ENST00000340541 NAIPQ13075 1403 aa23.37■■□□□ 1.33
VAPA-201ENST00000340541 TET3O43151 1660 aa23.36■■□□□ 1.33
VAPA-201ENST00000340541 GCC2Q8IWJ2 1684 aa23.36■■□□□ 1.33
VAPA-201ENST00000340541 SLIT1O75093 1534 aa23.35■■□□□ 1.33
VAPA-201ENST00000340541 IQGAP3Q86VI3 1631 aa23.35■■□□□ 1.33
VAPA-201ENST00000340541 EID1Q9Y6B2 187 aa23.35■■□□□ 1.33
VAPA-201ENST00000340541 SCAF11Q99590 1463 aaKnown RBP23.35■■□□□ 1.33
VAPA-201ENST00000340541 ARHGAP23Q9P227 1491 aa23.35■■□□□ 1.33
VAPA-201ENST00000340541 PIP4K2BP78356 416 aa23.34■■□□□ 1.33
VAPA-201ENST00000340541 TXNDC2Q86VQ3 553 aa23.34■■□□□ 1.33
VAPA-201ENST00000340541 SCAF1Q9H7N4 1312 aaKnown RBP23.33■■□□□ 1.32
VAPA-201ENST00000340541 LTKP29376 864 aa23.32■■□□□ 1.32
VAPA-201ENST00000340541 HFM1A2PYH4 1435 aa23.32■■□□□ 1.32
VAPA-201ENST00000340541 NOS1P29475 1434 aa23.32■■□□□ 1.32
VAPA-201ENST00000340541 SYNMO15061 1565 aa23.31■■□□□ 1.32
VAPA-201ENST00000340541 RPRD2Q5VT52 1461 aaKnown RBP23.31■■□□□ 1.32
VAPA-201ENST00000340541 HSPA1LP34931 641 aa23.31■■□□□ 1.32
VAPA-201ENST00000340541 NUP155O75694 1391 aa23.29■■□□□ 1.32
VAPA-201ENST00000340541 LRRC7Q96NW7 1537 aa23.29■■□□□ 1.32
VAPA-201ENST00000340541 E9PCH4 1651 aa23.28■■□□□ 1.32
VAPA-201ENST00000340541 KDM5AP29375 1690 aaKnown RBP23.28■■□□□ 1.32
VAPA-201ENST00000340541 STAG3Q9UJ98 1225 aa23.28■■□□□ 1.32
VAPA-201ENST00000340541 TMEM2Q9UHN6 1383 aa23.27■■□□□ 1.32
VAPA-201ENST00000340541 IDI1Q13907 227 aa23.27■■□□□ 1.32
VAPA-201ENST00000340541 STRCP1A6NGW2 1772 aa23.27■■□□□ 1.32
VAPA-201ENST00000340541 PIK3C2BO00750 1634 aa23.26■■□□□ 1.31
VAPA-201ENST00000340541 SLC52A1Q9NWF4 448 aa23.25■■□□□ 1.31
VAPA-201ENST00000340541 ALKQ9UM73 1620 aa23.23■■□□□ 1.31
VAPA-201ENST00000340541 ADGRB3O60242 1522 aa23.16■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms