RNA–Protein interactions for RNA: ENST00000338468.7

PRKN-201, Transcript of parkin RBR E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene PRKN, Length 1,276 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKN-201ENST00000338468 GGT6Q6P531 493 aa23.7■■□□□ 1.38
PRKN-201ENST00000338468 ILDR2Q71H61 639 aa23.7■■□□□ 1.38
PRKN-201ENST00000338468 MROH2AA6NES4 1674 aa23.69■■□□□ 1.38
PRKN-201ENST00000338468 LTBP4Q8N2S1 1624 aa23.69■■□□□ 1.38
PRKN-201ENST00000338468 IQSEC2Q5JU85 1478 aa23.68■■□□□ 1.38
PRKN-201ENST00000338468 CLTCQ00610 1675 aaKnown RBP23.68■■□□□ 1.38
PRKN-201ENST00000338468 SOCS7O14512 581 aa23.67■■□□□ 1.38
PRKN-201ENST00000338468 KIF3BO15066 747 aa23.67■■□□□ 1.38
PRKN-201ENST00000338468 NPATQ14207 1427 aa23.67■■□□□ 1.38
PRKN-201ENST00000338468 ZMYM3Q14202 1370 aa23.65■■□□□ 1.38
PRKN-201ENST00000338468 PPARGC1BQ86YN6 1023 aaKnown RBP23.65■■□□□ 1.38
PRKN-201ENST00000338468 PPP6R1Q9UPN7 881 aa23.64■■□□□ 1.37
PRKN-201ENST00000338468 CAMSAP1Q5T5Y3 1602 aa23.63■■□□□ 1.37
PRKN-201ENST00000338468 DUOX2Q9NRD8 1548 aa23.61■■□□□ 1.37
PRKN-201ENST00000338468 RNF17Q9BXT8 1623 aaKnown RBP23.6■■□□□ 1.37
PRKN-201ENST00000338468 EIF2AK4Q9P2K8 1649 aaKnown RBP23.6■■□□□ 1.37
PRKN-201ENST00000338468 FAM50AQ14320 339 aaKnown RBP23.6■■□□□ 1.37
PRKN-201ENST00000338468 KIF15Q9NS87 1388 aa23.6■■□□□ 1.37
PRKN-201ENST00000338468 RRP7BPQ9NSQ0 103 aa23.58■■□□□ 1.37
PRKN-201ENST00000338468 CHIC2Q9UKJ5 165 aa23.57■■□□□ 1.36
PRKN-201ENST00000338468 MROH1Q8NDA8 1641 aa23.57■■□□□ 1.36
PRKN-201ENST00000338468 KDM5DQ9BY66 1539 aa23.57■■□□□ 1.36
PRKN-201ENST00000338468 FAM135AQ9P2D6 1515 aa23.57■■□□□ 1.36
PRKN-201ENST00000338468 PTPRKQ15262 1439 aa23.57■■□□□ 1.36
PRKN-201ENST00000338468 ZNF142P52746 1687 aaPredicted RBP23.55■■□□□ 1.36
PRKN-201ENST00000338468 ADGRL2O95490 1459 aa23.55■■□□□ 1.36
PRKN-201ENST00000338468 MYO3AQ8NEV4 1616 aa23.55■■□□□ 1.36
PRKN-201ENST00000338468 ERBINQ96RT1 1412 aa23.54■■□□□ 1.36
PRKN-201ENST00000338468 ANKRD30AQ9BXX3 1397 aa23.53■■□□□ 1.36
PRKN-201ENST00000338468 PLA2R1Q13018 1463 aa23.52■■□□□ 1.36
PRKN-201ENST00000338468 WASHC2CQ9Y4E1 1318 aa23.52■■□□□ 1.36
PRKN-201ENST00000338468 ABCC3O15438 1527 aa23.51■■□□□ 1.35
PRKN-201ENST00000338468 CEP170BQ9Y4F5 1589 aaPredicted RBP23.51■■□□□ 1.35
PRKN-201ENST00000338468 NCKAP5LQ9HCH0 1330 aa23.51■■□□□ 1.35
PRKN-201ENST00000338468 ZNF335Q9H4Z2 1342 aaPredicted RBP23.49■■□□□ 1.35
PRKN-201ENST00000338468 PZPP20742 1482 aa23.49■■□□□ 1.35
PRKN-201ENST00000338468 PKD2Q13563 968 aa23.48■■□□□ 1.35
PRKN-201ENST00000338468 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.47■■□□□ 1.35
PRKN-201ENST00000338468 PRDM15P57071 1507 aaPredicted RBP23.47■■□□□ 1.35
PRKN-201ENST00000338468 DEPDC5O75140 1603 aa23.47■■□□□ 1.35
PRKN-201ENST00000338468 ZC3H13Q5T200 1668 aaKnown RBP23.47■■□□□ 1.35
PRKN-201ENST00000338468 UBAP1LF5GYI3 381 aa23.46■■□□□ 1.35
PRKN-201ENST00000338468 FBXO31Q5XUX0 539 aaPredicted RBP23.46■■□□□ 1.35
PRKN-201ENST00000338468 CEP152O94986 1710 aa23.44■■□□□ 1.34
PRKN-201ENST00000338468 RRBP1Q9P2E9 1410 aaKnown RBP23.43■■□□□ 1.34
PRKN-201ENST00000338468 VWDEQ8N2E2 1590 aa23.4■■□□□ 1.34
PRKN-201ENST00000338468 ROCK1Q13464 1354 aa23.4■■□□□ 1.34
PRKN-201ENST00000338468 TNRQ92752 1358 aa23.4■■□□□ 1.34
PRKN-201ENST00000338468 ANKRD50Q9ULJ7 1429 aa23.39■■□□□ 1.33
PRKN-201ENST00000338468 A2ML1A8K2U0 1454 aa23.38■■□□□ 1.33
PRKN-201ENST00000338468 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.38■■□□□ 1.33
PRKN-201ENST00000338468 ITGAEP38570 1179 aa23.36■■□□□ 1.33
PRKN-201ENST00000338468 ERVK-7P63135 1459 aa23.35■■□□□ 1.33
PRKN-201ENST00000338468 ARHGAP31Q2M1Z3 1444 aa23.34■■□□□ 1.33
PRKN-201ENST00000338468 LMTK2Q8IWU2 1503 aa23.34■■□□□ 1.33
PRKN-201ENST00000338468 KANK1Q14678 1352 aa23.32■■□□□ 1.32
PRKN-201ENST00000338468 POLR1AO95602 1720 aaPredicted RBP23.32■■□□□ 1.32
PRKN-201ENST00000338468 NLRP1Q9C000 1473 aa23.3■■□□□ 1.32
PRKN-201ENST00000338468 CPS1P31327 1500 aa23.29■■□□□ 1.32
PRKN-201ENST00000338468 UNC13BO14795 1591 aa23.28■■□□□ 1.32
PRKN-201ENST00000338468 CFAP65Q6ZU64 1925 aaKnown RBP23.28■■□□□ 1.32
PRKN-201ENST00000338468 SCAF1Q9H7N4 1312 aaKnown RBP23.28■■□□□ 1.32
PRKN-201ENST00000338468 NEURL4Q96JN8 1562 aa23.27■■□□□ 1.32
PRKN-201ENST00000338468 EFCAB6Q5THR3 1501 aa23.26■■□□□ 1.31
PRKN-201ENST00000338468 UGGT1Q9NYU2 1555 aa23.23■■□□□ 1.31
PRKN-201ENST00000338468 TOM1O60784 492 aa23.23■■□□□ 1.31
PRKN-201ENST00000338468 MED1Q15648 1581 aaPredicted RBP23.23■■□□□ 1.31
PRKN-201ENST00000338468 PIP4K2BP78356 416 aa23.22■■□□□ 1.31
PRKN-201ENST00000338468 HSPA1LP34931 641 aa23.21■■□□□ 1.31
PRKN-201ENST00000338468 TET3O43151 1660 aa23.2■■□□□ 1.3
PRKN-201ENST00000338468 SYNMO15061 1565 aa23.19■■□□□ 1.3
PRKN-201ENST00000338468 NOS1P29475 1434 aa23.19■■□□□ 1.3
PRKN-201ENST00000338468 ANKLE2Q86XL3 938 aa23.19■■□□□ 1.3
PRKN-201ENST00000338468 IQGAP3Q86VI3 1631 aa23.19■■□□□ 1.3
PRKN-201ENST00000338468 NAIPQ13075 1403 aa23.18■■□□□ 1.3
PRKN-201ENST00000338468 THEMISQ8N1K5 641 aaPredicted RBP23.18■■□□□ 1.3
PRKN-201ENST00000338468 UBR1Q8IWV7 1749 aa23.18■■□□□ 1.3
PRKN-201ENST00000338468 RPRD2Q5VT52 1461 aaKnown RBP23.17■■□□□ 1.3
PRKN-201ENST00000338468 GCC2Q8IWJ2 1684 aa23.16■■□□□ 1.3
PRKN-201ENST00000338468 PIK3C2BO00750 1634 aa23.15■■□□□ 1.3
PRKN-201ENST00000338468 MED14O60244 1454 aa23.14■■□□□ 1.29
PRKN-201ENST00000338468 NPHP4O75161 1426 aaPredicted RBP23.14■■□□□ 1.29
PRKN-201ENST00000338468 NUP155O75694 1391 aa23.14■■□□□ 1.29
PRKN-201ENST00000338468 E9PCH4 1651 aa23.13■■□□□ 1.29
PRKN-201ENST00000338468 HFM1A2PYH4 1435 aa23.12■■□□□ 1.29
PRKN-201ENST00000338468 IDI1Q13907 227 aa23.12■■□□□ 1.29
PRKN-201ENST00000338468 IQGAP1P46940 1657 aa23.11■■□□□ 1.29
PRKN-201ENST00000338468 ARHGAP23Q9P227 1491 aa23.09■■□□□ 1.29
PRKN-201ENST00000338468 SLIT1O75093 1534 aa23.08■■□□□ 1.28
PRKN-201ENST00000338468 KDM5AP29375 1690 aaKnown RBP23.07■■□□□ 1.28
PRKN-201ENST00000338468 PHF23Q9BUL5 403 aaPredicted RBP23.07■■□□□ 1.28
PRKN-201ENST00000338468 ALKQ9UM73 1620 aa23.07■■□□□ 1.28
PRKN-201ENST00000338468 SLC52A1Q9NWF4 448 aa23.05■■□□□ 1.28
PRKN-201ENST00000338468 ADGRB3O60242 1522 aa23.04■■□□□ 1.28
PRKN-201ENST00000338468 LTKP29376 864 aa23.04■■□□□ 1.28
PRKN-201ENST00000338468 TMEM2Q9UHN6 1383 aa23.03■■□□□ 1.28
PRKN-201ENST00000338468 SCAF11Q99590 1463 aaKnown RBP23.02■■□□□ 1.28
PRKN-201ENST00000338468 LRRC7Q96NW7 1537 aa23.01■■□□□ 1.27
PRKN-201ENST00000338468 STRCP1A6NGW2 1772 aa22.99■■□□□ 1.27
PRKN-201ENST00000338468 TXNDC2Q86VQ3 553 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms