RNA–Protein interactions for RNA: ENST00000337571.8

CAPN3-202, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,271 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-202ENST00000337571 CNKSR2Q8WXI2 1034 aa16.75■□□□□ 0.27
CAPN3-202ENST00000337571 CAMSAP1Q5T5Y3 1602 aa16.74■□□□□ 0.27
CAPN3-202ENST00000337571 WASHC2CQ9Y4E1 1318 aa16.74■□□□□ 0.27
CAPN3-202ENST00000337571 KANK4Q5T7N3 995 aaPredicted RBP16.74■□□□□ 0.27
CAPN3-202ENST00000337571 MAP3K1Q13233 1512 aa16.74■□□□□ 0.27
CAPN3-202ENST00000337571 ARHGEF5Q12774 1597 aa16.73■□□□□ 0.27
CAPN3-202ENST00000337571 PTPRKQ15262 1439 aa16.73■□□□□ 0.27
CAPN3-202ENST00000337571 NCOA1Q15788 1441 aa16.73■□□□□ 0.27
CAPN3-202ENST00000337571 NCKAP5LQ9HCH0 1330 aa16.71■□□□□ 0.27
CAPN3-202ENST00000337571 PKD2Q13563 968 aa16.71■□□□□ 0.27
CAPN3-202ENST00000337571 MYO3AQ8NEV4 1616 aa16.7■□□□□ 0.26
CAPN3-202ENST00000337571 MIA2Q96PC5 1412 aa16.69■□□□□ 0.26
CAPN3-202ENST00000337571 CEP170BQ9Y4F5 1589 aaPredicted RBP16.68■□□□□ 0.26
CAPN3-202ENST00000337571 MYOM3Q5VTT5 1437 aa16.68■□□□□ 0.26
CAPN3-202ENST00000337571 ZNF142P52746 1687 aaPredicted RBP16.68■□□□□ 0.26
CAPN3-202ENST00000337571 KDM5DQ9BY66 1539 aa16.67■□□□□ 0.26
CAPN3-202ENST00000337571 FBXO31Q5XUX0 539 aaPredicted RBP16.67■□□□□ 0.26
CAPN3-202ENST00000337571 FAM135AQ9P2D6 1515 aa16.66■□□□□ 0.26
CAPN3-202ENST00000337571 PLA2R1Q13018 1463 aa16.66■□□□□ 0.26
CAPN3-202ENST00000337571 TNRQ92752 1358 aa16.65■□□□□ 0.26
CAPN3-202ENST00000337571 NCBP3Q53F19 620 aaKnown RBP16.64■□□□□ 0.25
CAPN3-202ENST00000337571 A2ML1A8K2U0 1454 aa16.64■□□□□ 0.25
CAPN3-202ENST00000337571 MAST1Q9Y2H9 1570 aa16.64■□□□□ 0.25
CAPN3-202ENST00000337571 PZPP20742 1482 aa16.63■□□□□ 0.25
CAPN3-202ENST00000337571 THEMISQ8N1K5 641 aaPredicted RBP16.62■□□□□ 0.25
CAPN3-202ENST00000337571 DNMT1P26358 1616 aaKnown RBP16.62■□□□□ 0.25
CAPN3-202ENST00000337571 LTBP4Q8N2S1 1624 aa16.61■□□□□ 0.25
CAPN3-202ENST00000337571 TCOF1Q13428 1488 aaKnown RBP16.61■□□□□ 0.25
CAPN3-202ENST00000337571 ANKLE2Q86XL3 938 aa16.6■□□□□ 0.25
CAPN3-202ENST00000337571 ZNF335Q9H4Z2 1342 aaPredicted RBP16.6■□□□□ 0.25
CAPN3-202ENST00000337571 RRP7BPQ9NSQ0 103 aa16.59■□□□□ 0.25
CAPN3-202ENST00000337571 IQSEC2Q5JU85 1478 aa16.59■□□□□ 0.25
CAPN3-202ENST00000337571 EIF2AK4Q9P2K8 1649 aaKnown RBP16.59■□□□□ 0.25
CAPN3-202ENST00000337571 ZC3H13Q5T200 1668 aaKnown RBP16.57■□□□□ 0.24
CAPN3-202ENST00000337571 RNF17Q9BXT8 1623 aaKnown RBP16.57■□□□□ 0.24
CAPN3-202ENST00000337571 PTPN23Q9H3S7 1636 aa16.57■□□□□ 0.24
CAPN3-202ENST00000337571 DUOX2Q9NRD8 1548 aa16.57■□□□□ 0.24
CAPN3-202ENST00000337571 NLRP1Q9C000 1473 aa16.57■□□□□ 0.24
CAPN3-202ENST00000337571 POLR1AO95602 1720 aaPredicted RBP16.56■□□□□ 0.24
CAPN3-202ENST00000337571 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.55■□□□□ 0.24
CAPN3-202ENST00000337571 KIF15Q9NS87 1388 aa16.55■□□□□ 0.24
CAPN3-202ENST00000337571 UBAP1LF5GYI3 381 aa16.55■□□□□ 0.24
CAPN3-202ENST00000337571 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.55■□□□□ 0.24
CAPN3-202ENST00000337571 UGGT1Q9NYU2 1555 aa16.55■□□□□ 0.24
CAPN3-202ENST00000337571 ABCC3O15438 1527 aa16.55■□□□□ 0.24
CAPN3-202ENST00000337571 CFAP65Q6ZU64 1925 aaKnown RBP16.54■□□□□ 0.24
CAPN3-202ENST00000337571 ABCC5O15440 1437 aa16.53■□□□□ 0.24
CAPN3-202ENST00000337571 KCNA4P22459 653 aa16.53■□□□□ 0.24
CAPN3-202ENST00000337571 CHIC2Q9UKJ5 165 aa16.53■□□□□ 0.24
CAPN3-202ENST00000337571 SHANK2Q9UPX8 1470 aa16.53■□□□□ 0.24
CAPN3-202ENST00000337571 FGD6Q6ZV73 1430 aa16.53■□□□□ 0.24
CAPN3-202ENST00000337571 CROCC2H7BZ55 1655 aa16.52■□□□□ 0.23
CAPN3-202ENST00000337571 DAPK1P53355 1430 aa16.52■□□□□ 0.23
CAPN3-202ENST00000337571 KANK1Q14678 1352 aa16.51■□□□□ 0.23
CAPN3-202ENST00000337571 CEP152O94986 1710 aa16.51■□□□□ 0.23
CAPN3-202ENST00000337571 ERBINQ96RT1 1412 aa16.51■□□□□ 0.23
CAPN3-202ENST00000337571 ANKRD30AQ9BXX3 1397 aa16.51■□□□□ 0.23
CAPN3-202ENST00000337571 FAM50AQ14320 339 aaKnown RBP16.49■□□□□ 0.23
CAPN3-202ENST00000337571 SPATA31D1Q6ZQQ2 1576 aa16.49■□□□□ 0.23
CAPN3-202ENST00000337571 MROH1Q8NDA8 1641 aa16.48■□□□□ 0.23
CAPN3-202ENST00000337571 ERVK-7P63135 1459 aa16.48■□□□□ 0.23
CAPN3-202ENST00000337571 HOXD11P31277 338 aaPredicted RBP16.48■□□□□ 0.23
CAPN3-202ENST00000337571 RNF216Q9NWF9 866 aaPredicted RBP16.48■□□□□ 0.23
CAPN3-202ENST00000337571 NPHP4O75161 1426 aaPredicted RBP16.47■□□□□ 0.23
CAPN3-202ENST00000337571 DEPDC5O75140 1603 aa16.47■□□□□ 0.23
CAPN3-202ENST00000337571 DISP3Q9P2K9 1392 aa16.47■□□□□ 0.23
CAPN3-202ENST00000337571 NEURL4Q96JN8 1562 aa16.47■□□□□ 0.23
CAPN3-202ENST00000337571 CPS1P31327 1500 aa16.46■□□□□ 0.23
CAPN3-202ENST00000337571 TOM1O60784 492 aa16.46■□□□□ 0.23
CAPN3-202ENST00000337571 STAG3Q9UJ98 1225 aa16.46■□□□□ 0.23
CAPN3-202ENST00000337571 MED14O60244 1454 aa16.45■□□□□ 0.22
CAPN3-202ENST00000337571 PRDM15P57071 1507 aaPredicted RBP16.45■□□□□ 0.22
CAPN3-202ENST00000337571 ARHGAP31Q2M1Z3 1444 aa16.45■□□□□ 0.22
CAPN3-202ENST00000337571 EID1Q9Y6B2 187 aa16.44■□□□□ 0.22
CAPN3-202ENST00000337571 NPM3O75607 178 aaKnown RBP16.43■□□□□ 0.22
CAPN3-202ENST00000337571 TXNDC2Q86VQ3 553 aa16.43■□□□□ 0.22
CAPN3-202ENST00000337571 IQGAP1P46940 1657 aa16.43■□□□□ 0.22
CAPN3-202ENST00000337571 PIP4K2BP78356 416 aa16.42■□□□□ 0.22
CAPN3-202ENST00000337571 UBR1Q8IWV7 1749 aa16.42■□□□□ 0.22
CAPN3-202ENST00000337571 VWDEQ8N2E2 1590 aa16.38■□□□□ 0.21
CAPN3-202ENST00000337571 SCAF11Q99590 1463 aaKnown RBP16.38■□□□□ 0.21
CAPN3-202ENST00000337571 LTKP29376 864 aa16.37■□□□□ 0.21
CAPN3-202ENST00000337571 ADGRL2O95490 1459 aa16.36■□□□□ 0.21
CAPN3-202ENST00000337571 IDI1Q13907 227 aa16.36■□□□□ 0.21
CAPN3-202ENST00000337571 ANKRD50Q9ULJ7 1429 aa16.36■□□□□ 0.21
CAPN3-202ENST00000337571 LMTK2Q8IWU2 1503 aa16.35■□□□□ 0.21
CAPN3-202ENST00000337571 PIK3C2BO00750 1634 aa16.35■□□□□ 0.21
CAPN3-202ENST00000337571 SLIT1O75093 1534 aa16.35■□□□□ 0.21
CAPN3-202ENST00000337571 SLC52A1Q9NWF4 448 aa16.34■□□□□ 0.21
CAPN3-202ENST00000337571 HSPA1LP34931 641 aa16.33■□□□□ 0.2
CAPN3-202ENST00000337571 BCANQ96GW7 911 aa16.33■□□□□ 0.2
CAPN3-202ENST00000337571 TMEM2Q9UHN6 1383 aa16.33■□□□□ 0.2
CAPN3-202ENST00000337571 ARHGAP23Q9P227 1491 aa16.33■□□□□ 0.2
CAPN3-202ENST00000337571 KDM5AP29375 1690 aaKnown RBP16.31■□□□□ 0.2
CAPN3-202ENST00000337571 EFCAB6Q5THR3 1501 aa16.31■□□□□ 0.2
CAPN3-202ENST00000337571 ITGAEP38570 1179 aa16.31■□□□□ 0.2
CAPN3-202ENST00000337571 HDGFP51858 240 aaKnown RBP16.31■□□□□ 0.2
CAPN3-202ENST00000337571 ILDR2Q71H61 639 aa16.31■□□□□ 0.2
CAPN3-202ENST00000337571 LRRC7Q96NW7 1537 aa16.3■□□□□ 0.2
CAPN3-202ENST00000337571 PPARGC1BQ86YN6 1023 aaKnown RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms