RNA–Protein interactions for RNA: ENST00000331163.10

PDGFB-201, Transcript of platelet derived growth factor subunit B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDGFB, Length 3,497 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFB-201ENST00000331163 NUTM2FA1L443 756 aa21.85■■□□□ 1.09
PDGFB-201ENST00000331163 TSPOAP1O95153 1857 aa21.85■■□□□ 1.09
PDGFB-201ENST00000331163 MBD5Q9P267 1494 aa21.83■■□□□ 1.09
PDGFB-201ENST00000331163 KIAA1107Q9UPP5 1409 aa21.83■■□□□ 1.08
PDGFB-201ENST00000331163 ANKRD30BQ9BXX2 1392 aa21.83■■□□□ 1.08
PDGFB-201ENST00000331163 TIMELESSQ9UNS1 1208 aa21.82■■□□□ 1.08
PDGFB-201ENST00000331163 CFAP70Q5T0N1 1121 aa21.82■■□□□ 1.08
PDGFB-201ENST00000331163 DENND4BO75064 1496 aaPredicted RBP21.81■■□□□ 1.08
PDGFB-201ENST00000331163 CFAP65Q6ZU64 1925 aaKnown RBP21.81■■□□□ 1.08
PDGFB-201ENST00000331163 TNNT2P45379 298 aaPredicted RBP21.81■■□□□ 1.08
PDGFB-201ENST00000331163 ITSN2Q9NZM3 1697 aa21.79■■□□□ 1.08
PDGFB-201ENST00000331163 SAMD9LQ8IVG5 1584 aa21.79■■□□□ 1.08
PDGFB-201ENST00000331163 SHROOM2Q13796 1616 aa21.78■■□□□ 1.08
PDGFB-201ENST00000331163 UHRF1BP1LA0JNW5 1464 aa21.78■■□□□ 1.08
PDGFB-201ENST00000331163 CC2D1BQ5T0F9 858 aaKnown RBP21.78■■□□□ 1.08
PDGFB-201ENST00000331163 POGKQ9P215 609 aa21.76■■□□□ 1.07
PDGFB-201ENST00000331163 DNMT1P26358 1616 aaKnown RBP21.75■■□□□ 1.07
PDGFB-201ENST00000331163 RIMBP3CA6NJZ7 1639 aa21.75■■□□□ 1.07
PDGFB-201ENST00000331163 RIMBP3BA6NNM3 1639 aa21.75■■□□□ 1.07
PDGFB-201ENST00000331163 RIMBP3Q9UFD9 1639 aa21.75■■□□□ 1.07
PDGFB-201ENST00000331163 YEATS2Q9ULM3 1422 aa21.75■■□□□ 1.07
PDGFB-201ENST00000331163 CDC42BPAQ5VT25 1732 aa21.74■■□□□ 1.07
PDGFB-201ENST00000331163 DHX29Q7Z478 1369 aaKnown RBP21.73■■□□□ 1.07
PDGFB-201ENST00000331163 TSHZ2Q9NRE2 1034 aa21.73■■□□□ 1.07
PDGFB-201ENST00000331163 IDI1Q13907 227 aa21.72■■□□□ 1.07
PDGFB-201ENST00000331163 C11orf95C9JLR9 678 aaPredicted RBP21.72■■□□□ 1.07
PDGFB-201ENST00000331163 MRS2Q9HD23 443 aa21.71■■□□□ 1.07
PDGFB-201ENST00000331163 C14orf37Q86TY3 774 aa21.7■■□□□ 1.06
PDGFB-201ENST00000331163 ANP32EQ9BTT0 268 aa21.7■■□□□ 1.06
PDGFB-201ENST00000331163 USP47Q96K76 1375 aa21.69■■□□□ 1.06
PDGFB-201ENST00000331163 DNAJC5Q9H3Z4 198 aa21.67■■□□□ 1.06
PDGFB-201ENST00000331163 ZNF518AQ6AHZ1 1483 aa21.67■■□□□ 1.06
PDGFB-201ENST00000331163 BCL11AQ9H165 835 aa21.67■■□□□ 1.06
PDGFB-201ENST00000331163 HNRNPUQ00839 825 aaKnown RBP eCLIP21.67■■□□□ 1.06
PDGFB-201ENST00000331163 PZPP20742 1482 aa21.67■■□□□ 1.06
PDGFB-201ENST00000331163 MYO5CQ9NQX4 1742 aa21.66■■□□□ 1.06
PDGFB-201ENST00000331163 SRPK2P78362 688 aaKnown RBP21.66■■□□□ 1.06
PDGFB-201ENST00000331163 SOX12O15370 315 aa21.65■■□□□ 1.06
PDGFB-201ENST00000331163 A2MP01023 1474 aa21.65■■□□□ 1.06
PDGFB-201ENST00000331163 RBM33Q96EV2 1170 aaKnown RBP21.65■■□□□ 1.06
PDGFB-201ENST00000331163 ADGRF5Q8IZF2 1346 aa21.64■■□□□ 1.06
PDGFB-201ENST00000331163 WASHC2AQ641Q2 1341 aa21.64■■□□□ 1.05
PDGFB-201ENST00000331163 CDC42BPBQ9Y5S2 1711 aa21.64■■□□□ 1.05
PDGFB-201ENST00000331163 SLC26A8Q96RN1 970 aa21.63■■□□□ 1.05
PDGFB-201ENST00000331163 MINK1Q8N4C8 1332 aaPredicted RBP21.62■■□□□ 1.05
PDGFB-201ENST00000331163 FKBP8Q14318 412 aa21.61■■□□□ 1.05
PDGFB-201ENST00000331163 TMF1P82094 1093 aa21.6■■□□□ 1.05
PDGFB-201ENST00000331163 PPM1GO15355 546 aaPredicted RBP21.6■■□□□ 1.05
PDGFB-201ENST00000331163 PREX2Q70Z35 1606 aa21.59■■□□□ 1.05
PDGFB-201ENST00000331163 FAM135AQ9P2D6 1515 aa21.59■■□□□ 1.05
PDGFB-201ENST00000331163 KIF7Q2M1P5 1343 aa21.58■■□□□ 1.04
PDGFB-201ENST00000331163 ERBINQ96RT1 1412 aa21.57■■□□□ 1.04
PDGFB-201ENST00000331163 ATP7AQ04656 1500 aa21.57■■□□□ 1.04
PDGFB-201ENST00000331163 POGZQ7Z3K3 1410 aa21.56■■□□□ 1.04
PDGFB-201ENST00000331163 VGFO15240 615 aaPredicted RBP21.56■■□□□ 1.04
PDGFB-201ENST00000331163 ZBTB7CA1YPR0 619 aa21.55■■□□□ 1.04
PDGFB-201ENST00000331163 RPRD2Q5VT52 1461 aaKnown RBP21.55■■□□□ 1.04
PDGFB-201ENST00000331163 DUOX2Q9NRD8 1548 aa21.55■■□□□ 1.04
PDGFB-201ENST00000331163 ABCC1P33527 1531 aa21.54■■□□□ 1.04
PDGFB-201ENST00000331163 KNSTRNQ9Y448 316 aa21.54■■□□□ 1.04
PDGFB-201ENST00000331163 ADGRL2O95490 1459 aa21.53■■□□□ 1.04
PDGFB-201ENST00000331163 PANK3Q9H999 370 aa21.52■■□□□ 1.03
PDGFB-201ENST00000331163 SHANK2Q9UPX8 1470 aa21.51■■□□□ 1.03
PDGFB-201ENST00000331163 LMOD2Q6P5Q4 547 aa21.51■■□□□ 1.03
PDGFB-201ENST00000331163 TXNDC2Q86VQ3 553 aa21.51■■□□□ 1.03
PDGFB-201ENST00000331163 CABP2Q9NPB3 220 aa21.49■■□□□ 1.03
PDGFB-201ENST00000331163 EID1Q9Y6B2 187 aa21.48■■□□□ 1.03
PDGFB-201ENST00000331163 NEFLP07196 543 aa21.48■■□□□ 1.03
PDGFB-201ENST00000331163 WAPLQ7Z5K2 1190 aa21.46■■□□□ 1.03
PDGFB-201ENST00000331163 TEX14Q8IWB6 1497 aa21.46■■□□□ 1.03
PDGFB-201ENST00000331163 UGGT1Q9NYU2 1555 aa21.46■■□□□ 1.03
PDGFB-201ENST00000331163 IRX6P78412 446 aaPredicted RBP21.45■■□□□ 1.02
PDGFB-201ENST00000331163 CCDC184Q52MB2 194 aa21.44■■□□□ 1.02
PDGFB-201ENST00000331163 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.44■■□□□ 1.02
PDGFB-201ENST00000331163 RTEL1-TNFRSF6BF6WH68 1400 aa21.44■■□□□ 1.02
PDGFB-201ENST00000331163 PRAM1Q96QH2 718 aa21.43■■□□□ 1.02
PDGFB-201ENST00000331163 SLC52A1Q9NWF4 448 aa21.43■■□□□ 1.02
PDGFB-201ENST00000331163 NOS1P29475 1434 aa21.43■■□□□ 1.02
PDGFB-201ENST00000331163 COL17A1Q9UMD9 1497 aaPredicted RBP21.42■■□□□ 1.02
PDGFB-201ENST00000331163 NEUROD2Q15784 382 aa21.42■■□□□ 1.02
PDGFB-201ENST00000331163 ARHGEF5Q12774 1597 aa21.42■■□□□ 1.02
PDGFB-201ENST00000331163 CCDC7Q96M83 1385 aa21.42■■□□□ 1.02
PDGFB-201ENST00000331163 SLC12A5Q9H2X9 1139 aa21.4■■□□□ 1.02
PDGFB-201ENST00000331163 HDGFP51858 240 aaKnown RBP21.4■■□□□ 1.02
PDGFB-201ENST00000331163 NEO1Q92859 1461 aa21.4■■□□□ 1.02
PDGFB-201ENST00000331163 GCC2Q8IWJ2 1684 aa21.39■■□□□ 1.01
PDGFB-201ENST00000331163 ZFYVE16Q7Z3T8 1539 aa21.38■■□□□ 1.01
PDGFB-201ENST00000331163 ABCA9Q8IUA7 1624 aa21.38■■□□□ 1.01
PDGFB-201ENST00000331163 CENPJQ9HC77 1338 aaPredicted RBP21.37■■□□□ 1.01
PDGFB-201ENST00000331163 SLC24A1O60721 1099 aa21.37■■□□□ 1.01
PDGFB-201ENST00000331163 ZMYM3Q14202 1370 aa21.37■■□□□ 1.01
PDGFB-201ENST00000331163 HSPA2P54652 639 aa21.37■■□□□ 1.01
PDGFB-201ENST00000331163 NPATQ14207 1427 aa21.36■■□□□ 1.01
PDGFB-201ENST00000331163 CDCA8Q53HL2 280 aa21.36■■□□□ 1.01
PDGFB-201ENST00000331163 PLA2R1Q13018 1463 aa21.35■■□□□ 1.01
PDGFB-201ENST00000331163 ERICH6Q7L0X2 663 aa21.34■■□□□ 1.01
PDGFB-201ENST00000331163 PAK3O75914 559 aaPredicted RBP21.34■■□□□ 1.01
PDGFB-201ENST00000331163 PRKRIP1Q9H875 184 aaPredicted RBP21.34■■□□□ 1.01
PDGFB-201ENST00000331163 ADGBQ8N7X0 1667 aa21.34■■□□□ 1.01
PDGFB-201ENST00000331163 ATP10AO60312 1499 aa21.34■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms