RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 KDM5DQ9BY66 1539 aa27.72■■■□□ 2.03
HDDC3-201ENST00000330334 PZPP20742 1482 aa27.68■■■□□ 2.02
HDDC3-201ENST00000330334 ABCC5O15440 1437 aa27.67■■■□□ 2.02
HDDC3-201ENST00000330334 FGD6Q6ZV73 1430 aa27.67■■■□□ 2.02
HDDC3-201ENST00000330334 SHANK2Q9UPX8 1470 aa27.67■■■□□ 2.02
HDDC3-201ENST00000330334 CAMSAP1Q5T5Y3 1602 aa27.67■■■□□ 2.02
HDDC3-201ENST00000330334 TCOF1Q13428 1488 aaKnown RBP27.66■■■□□ 2.02
HDDC3-201ENST00000330334 MYO3AQ8NEV4 1616 aa27.66■■■□□ 2.02
HDDC3-201ENST00000330334 PTPN23Q9H3S7 1636 aa27.66■■■□□ 2.02
HDDC3-201ENST00000330334 ZNF142P52746 1687 aaPredicted RBP27.65■■■□□ 2.02
HDDC3-201ENST00000330334 PLA2R1Q13018 1463 aa27.65■■■□□ 2.02
HDDC3-201ENST00000330334 PKD2Q13563 968 aa27.65■■■□□ 2.02
HDDC3-201ENST00000330334 FBXO31Q5XUX0 539 aaPredicted RBP27.65■■■□□ 2.02
HDDC3-201ENST00000330334 CEP170BQ9Y4F5 1589 aaPredicted RBP27.65■■■□□ 2.02
HDDC3-201ENST00000330334 DUOX2Q9NRD8 1548 aa27.64■■■□□ 2.02
HDDC3-201ENST00000330334 RNF17Q9BXT8 1623 aaKnown RBP27.63■■■□□ 2.01
HDDC3-201ENST00000330334 EIF2AK4Q9P2K8 1649 aaKnown RBP27.63■■■□□ 2.01
HDDC3-201ENST00000330334 A2ML1A8K2U0 1454 aa27.63■■■□□ 2.01
HDDC3-201ENST00000330334 TNRQ92752 1358 aa27.62■■■□□ 2.01
HDDC3-201ENST00000330334 DAPK1P53355 1430 aa27.6■■■□□ 2.01
HDDC3-201ENST00000330334 KIF15Q9NS87 1388 aa27.6■■■□□ 2.01
HDDC3-201ENST00000330334 NCKAP5LQ9HCH0 1330 aa27.59■■■□□ 2.01
HDDC3-201ENST00000330334 RRP7BPQ9NSQ0 103 aa27.57■■■□□ 2
HDDC3-201ENST00000330334 ERBINQ96RT1 1412 aa27.57■■■□□ 2
HDDC3-201ENST00000330334 ABCC3O15438 1527 aa27.57■■■□□ 2
HDDC3-201ENST00000330334 DNMT1P26358 1616 aaKnown RBP27.56■■■□□ 2
HDDC3-201ENST00000330334 CROCC2H7BZ55 1655 aa27.55■■■□□ 2
HDDC3-201ENST00000330334 ZC3H13Q5T200 1668 aaKnown RBP27.54■■■□□ 2
HDDC3-201ENST00000330334 NLRP1Q9C000 1473 aa27.54■■■□□ 2
HDDC3-201ENST00000330334 MROH1Q8NDA8 1641 aa27.52■■■□□ 2
HDDC3-201ENST00000330334 ANKRD30AQ9BXX3 1397 aa27.52■■■□□ 2
HDDC3-201ENST00000330334 THEMISQ8N1K5 641 aaPredicted RBP27.51■■□□□ 1.99
HDDC3-201ENST00000330334 LTBP4Q8N2S1 1624 aa27.5■■□□□ 1.99
HDDC3-201ENST00000330334 CHIC2Q9UKJ5 165 aa27.47■■□□□ 1.99
HDDC3-201ENST00000330334 ARHGAP31Q2M1Z3 1444 aa27.47■■□□□ 1.99
HDDC3-201ENST00000330334 SPATA31D1Q6ZQQ2 1576 aa27.47■■□□□ 1.99
HDDC3-201ENST00000330334 PRDM15P57071 1507 aaPredicted RBP27.46■■□□□ 1.99
HDDC3-201ENST00000330334 IQSEC2Q5JU85 1478 aa27.44■■□□□ 1.98
HDDC3-201ENST00000330334 FAM50AQ14320 339 aaKnown RBP27.44■■□□□ 1.98
HDDC3-201ENST00000330334 ANKLE2Q86XL3 938 aa27.44■■□□□ 1.98
HDDC3-201ENST00000330334 ADGRL2O95490 1459 aa27.44■■□□□ 1.98
HDDC3-201ENST00000330334 ERVK-7P63135 1459 aa27.44■■□□□ 1.98
HDDC3-201ENST00000330334 UGGT1Q9NYU2 1555 aa27.42■■□□□ 1.98
HDDC3-201ENST00000330334 KANK1Q14678 1352 aa27.41■■□□□ 1.98
HDDC3-201ENST00000330334 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.41■■□□□ 1.98
HDDC3-201ENST00000330334 ZNF335Q9H4Z2 1342 aaPredicted RBP27.41■■□□□ 1.98
HDDC3-201ENST00000330334 DEPDC5O75140 1603 aa27.4■■□□□ 1.98
HDDC3-201ENST00000330334 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.39■■□□□ 1.98
HDDC3-201ENST00000330334 CEP152O94986 1710 aa27.37■■□□□ 1.97
HDDC3-201ENST00000330334 MED14O60244 1454 aa27.35■■□□□ 1.97
HDDC3-201ENST00000330334 LMTK2Q8IWU2 1503 aa27.35■■□□□ 1.97
HDDC3-201ENST00000330334 VWDEQ8N2E2 1590 aa27.34■■□□□ 1.97
HDDC3-201ENST00000330334 NEURL4Q96JN8 1562 aa27.34■■□□□ 1.97
HDDC3-201ENST00000330334 POLR1AO95602 1720 aaPredicted RBP27.32■■□□□ 1.96
HDDC3-201ENST00000330334 ANKRD50Q9ULJ7 1429 aa27.32■■□□□ 1.96
HDDC3-201ENST00000330334 NPHP4O75161 1426 aaPredicted RBP27.28■■□□□ 1.96
HDDC3-201ENST00000330334 ROCK1Q13464 1354 aa27.27■■□□□ 1.96
HDDC3-201ENST00000330334 CFAP65Q6ZU64 1925 aaKnown RBP27.26■■□□□ 1.95
HDDC3-201ENST00000330334 UBR1Q8IWV7 1749 aa27.23■■□□□ 1.95
HDDC3-201ENST00000330334 CPS1P31327 1500 aa27.22■■□□□ 1.95
HDDC3-201ENST00000330334 ARHGAP23Q9P227 1491 aa27.22■■□□□ 1.95
HDDC3-201ENST00000330334 SLIT1O75093 1534 aa27.21■■□□□ 1.95
HDDC3-201ENST00000330334 NOS1P29475 1434 aa27.21■■□□□ 1.95
HDDC3-201ENST00000330334 EFCAB6Q5THR3 1501 aa27.21■■□□□ 1.95
HDDC3-201ENST00000330334 IDI1Q13907 227 aa27.2■■□□□ 1.94
HDDC3-201ENST00000330334 SLC52A1Q9NWF4 448 aa27.19■■□□□ 1.94
HDDC3-201ENST00000330334 RPRD2Q5VT52 1461 aaKnown RBP27.19■■□□□ 1.94
HDDC3-201ENST00000330334 LTKP29376 864 aa27.18■■□□□ 1.94
HDDC3-201ENST00000330334 TXNDC2Q86VQ3 553 aa27.18■■□□□ 1.94
HDDC3-201ENST00000330334 EID1Q9Y6B2 187 aa27.18■■□□□ 1.94
HDDC3-201ENST00000330334 SCAF11Q99590 1463 aaKnown RBP27.18■■□□□ 1.94
HDDC3-201ENST00000330334 IQGAP1P46940 1657 aa27.17■■□□□ 1.94
HDDC3-201ENST00000330334 UBAP1LF5GYI3 381 aa27.17■■□□□ 1.94
HDDC3-201ENST00000330334 PPARGC1BQ86YN6 1023 aaKnown RBP27.16■■□□□ 1.94
HDDC3-201ENST00000330334 STAG3Q9UJ98 1225 aa27.16■■□□□ 1.94
HDDC3-201ENST00000330334 TMEM2Q9UHN6 1383 aa27.16■■□□□ 1.94
HDDC3-201ENST00000330334 KDM5AP29375 1690 aaKnown RBP27.15■■□□□ 1.94
HDDC3-201ENST00000330334 PIK3C2BO00750 1634 aa27.13■■□□□ 1.93
HDDC3-201ENST00000330334 SYNMO15061 1565 aa27.12■■□□□ 1.93
HDDC3-201ENST00000330334 UNC13BO14795 1591 aa27.1■■□□□ 1.93
HDDC3-201ENST00000330334 TET3O43151 1660 aa27.08■■□□□ 1.93
HDDC3-201ENST00000330334 TOM1O60784 492 aa27.08■■□□□ 1.93
HDDC3-201ENST00000330334 ITGAEP38570 1179 aa27.08■■□□□ 1.93
HDDC3-201ENST00000330334 RRBP1Q9P2E9 1410 aaKnown RBP27.07■■□□□ 1.92
HDDC3-201ENST00000330334 ADGRB3O60242 1522 aa27.03■■□□□ 1.92
HDDC3-201ENST00000330334 NUP155O75694 1391 aa27.02■■□□□ 1.92
HDDC3-201ENST00000330334 GCC2Q8IWJ2 1684 aa27.01■■□□□ 1.92
HDDC3-201ENST00000330334 LRRC7Q96NW7 1537 aa27■■□□□ 1.91
HDDC3-201ENST00000330334 IQGAP3Q86VI3 1631 aa27■■□□□ 1.91
HDDC3-201ENST00000330334 HDGFP51858 240 aaKnown RBP26.99■■□□□ 1.91
HDDC3-201ENST00000330334 STRCP1A6NGW2 1772 aa26.97■■□□□ 1.91
HDDC3-201ENST00000330334 E9PCH4 1651 aa26.94■■□□□ 1.9
HDDC3-201ENST00000330334 ZFYVE9O95405 1425 aa26.93■■□□□ 1.9
HDDC3-201ENST00000330334 PIP4K2BP78356 416 aa26.93■■□□□ 1.9
HDDC3-201ENST00000330334 KCNA6P17658 529 aa26.92■■□□□ 1.9
HDDC3-201ENST00000330334 TMEM131LA2VDJ0 1609 aa26.91■■□□□ 1.9
HDDC3-201ENST00000330334 SLC26A8Q96RN1 970 aa26.91■■□□□ 1.9
HDDC3-201ENST00000330334 ABCF1Q8NE71 845 aaKnown RBP eCLIP26.9■■□□□ 1.9
HDDC3-201ENST00000330334 SCAF1Q9H7N4 1312 aaKnown RBP26.9■■□□□ 1.9
HDDC3-201ENST00000330334 PLEKHG1Q9ULL1 1385 aa26.89■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms