RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 DDX49Q9Y6V7 483 aaKnown RBP21.59■■□□□ 1.05
SYNPO-201ENST00000307662 EIF3AQ14152 1382 aaKnown RBP21.57■■□□□ 1.04
SYNPO-201ENST00000307662 TRIM6-TRIM34B2RNG4 842 aa21.57■■□□□ 1.04
SYNPO-201ENST00000307662 PRKRIP1Q9H875 184 aaPredicted RBP21.57■■□□□ 1.04
SYNPO-201ENST00000307662 SOX12O15370 315 aa21.56■■□□□ 1.04
SYNPO-201ENST00000307662 GGT6Q6P531 493 aa21.56■■□□□ 1.04
SYNPO-201ENST00000307662 RUSC2Q8N2Y8 1516 aa21.56■■□□□ 1.04
SYNPO-201ENST00000307662 CCDC18Q5T9S5 1454 aa21.55■■□□□ 1.04
SYNPO-201ENST00000307662 NOL8Q76FK4 1167 aaKnown RBP21.55■■□□□ 1.04
SYNPO-201ENST00000307662 CRBNQ96SW2 442 aa21.54■■□□□ 1.04
SYNPO-201ENST00000307662 RSPH4AQ5TD94 716 aa21.54■■□□□ 1.04
SYNPO-201ENST00000307662 PLIN1O60240 522 aa21.53■■□□□ 1.04
SYNPO-201ENST00000307662 GPATCH3Q96I76 525 aa21.51■■□□□ 1.03
SYNPO-201ENST00000307662 HSP90B1P14625 803 aaKnown RBP21.51■■□□□ 1.03
SYNPO-201ENST00000307662 NOC3LQ8WTT2 800 aaKnown RBP21.51■■□□□ 1.03
SYNPO-201ENST00000307662 STK31Q9BXU1 1019 aa21.51■■□□□ 1.03
SYNPO-201ENST00000307662 FOXD4L5Q5VV16 416 aaPredicted RBP21.5■■□□□ 1.03
SYNPO-201ENST00000307662 FOXD4L4Q8WXT5 416 aaPredicted RBP21.5■■□□□ 1.03
SYNPO-201ENST00000307662 CCDC34Q96HJ3 373 aa21.49■■□□□ 1.03
SYNPO-201ENST00000307662 STK26Q9P289 416 aa21.48■■□□□ 1.03
SYNPO-201ENST00000307662 HNRNPMP52272 730 aaKnown RBP eCLIP21.48■■□□□ 1.03
SYNPO-201ENST00000307662 KIF16BQ96L93 1317 aa21.48■■□□□ 1.03
SYNPO-201ENST00000307662 CGNL1Q0VF96 1302 aa21.48■■□□□ 1.03
SYNPO-201ENST00000307662 NPHP1O15259 732 aa21.47■■□□□ 1.03
SYNPO-201ENST00000307662 CHMP4AQ9BY43 222 aa21.46■■□□□ 1.03
SYNPO-201ENST00000307662 MLECQ14165 292 aa21.46■■□□□ 1.03
SYNPO-201ENST00000307662 E9PSI1 815 aa21.45■■□□□ 1.02
SYNPO-201ENST00000307662 SPAG9O60271 1321 aaKnown RBP21.45■■□□□ 1.02
SYNPO-201ENST00000307662 CHMP5Q9NZZ3 219 aa21.45■■□□□ 1.02
SYNPO-201ENST00000307662 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.43■■□□□ 1.02
SYNPO-201ENST00000307662 HDAC5Q9UQL6 1122 aa21.43■■□□□ 1.02
SYNPO-201ENST00000307662 ATP6V1DQ9Y5K8 247 aa21.43■■□□□ 1.02
SYNPO-201ENST00000307662 ZNF771Q7L3S4 317 aaPredicted RBP21.42■■□□□ 1.02
SYNPO-201ENST00000307662 FAM13BQ9NYF5 915 aa21.42■■□□□ 1.02
SYNPO-201ENST00000307662 LMOD3Q0VAK6 560 aa21.42■■□□□ 1.02
SYNPO-201ENST00000307662 KIF3BO15066 747 aa21.41■■□□□ 1.02
SYNPO-201ENST00000307662 SLC4A10Q6U841 1118 aa21.41■■□□□ 1.02
SYNPO-201ENST00000307662 ZKSCAN2Q63HK3 967 aa21.41■■□□□ 1.02
SYNPO-201ENST00000307662 FAM43AQ8N2R8 423 aa21.41■■□□□ 1.02
SYNPO-201ENST00000307662 ANKRD45Q5TZF3 282 aa21.41■■□□□ 1.02
SYNPO-201ENST00000307662 KIF3AQ9Y496 699 aa21.41■■□□□ 1.02
SYNPO-201ENST00000307662 JPH4Q96JJ6 628 aa21.4■■□□□ 1.02
SYNPO-201ENST00000307662 NFKBIBQ15653 356 aa21.4■■□□□ 1.02
SYNPO-201ENST00000307662 ST20-MTHFSA0A0A6YYL1 179 aa21.4■■□□□ 1.02
SYNPO-201ENST00000307662 TPM3P06753 285 aa21.4■■□□□ 1.02
SYNPO-201ENST00000307662 PANK3Q9H999 370 aa21.4■■□□□ 1.02
SYNPO-201ENST00000307662 CLSTN1O94985 981 aa21.39■■□□□ 1.01
SYNPO-201ENST00000307662 COG6Q9Y2V7 657 aa21.39■■□□□ 1.01
SYNPO-201ENST00000307662 TERF2IPQ9NYB0 399 aa21.39■■□□□ 1.01
SYNPO-201ENST00000307662 GOLGA6L19H0YKK7 550 aa21.38■■□□□ 1.01
SYNPO-201ENST00000307662 RRP7AQ9Y3A4 280 aaKnown RBP21.38■■□□□ 1.01
SYNPO-201ENST00000307662 FANCD2Q9BXW9 1451 aa21.37■■□□□ 1.01
SYNPO-201ENST00000307662 BCL2L13Q9BXK5 485 aa21.37■■□□□ 1.01
SYNPO-201ENST00000307662 SF3A1Q15459 793 aaKnown RBP21.36■■□□□ 1.01
SYNPO-201ENST00000307662 SETQ01105 290 aaPredicted RBP21.35■■□□□ 1.01
SYNPO-201ENST00000307662 A0A0U1RQG5 324 aaPredicted RBP21.35■■□□□ 1.01
SYNPO-201ENST00000307662 BECN2A8MW95 431 aa21.34■■□□□ 1.01
SYNPO-201ENST00000307662 GPS2Q13227 327 aa21.33■■□□□ 1.01
SYNPO-201ENST00000307662 GORABQ5T7V8 394 aa21.33■■□□□ 1.01
SYNPO-201ENST00000307662 ISY1Q9ULR0 285 aaKnown RBP21.33■■□□□ 1.01
SYNPO-201ENST00000307662 FOXD4L6Q3SYB3 417 aaPredicted RBP21.32■■□□□ 1
SYNPO-201ENST00000307662 FOXD4L3Q6VB84 417 aaPredicted RBP21.32■■□□□ 1
SYNPO-201ENST00000307662 USP47Q96K76 1375 aa21.32■■□□□ 1
SYNPO-201ENST00000307662 H3BQV1 296 aa21.32■■□□□ 1
SYNPO-201ENST00000307662 IFFO2Q5TF58 517 aa21.32■■□□□ 1
SYNPO-201ENST00000307662 RILPL2Q969X0 211 aa21.31■■□□□ 1
SYNPO-201ENST00000307662 ZNF592Q92610 1267 aa21.3■■□□□ 1
SYNPO-201ENST00000307662 IGF1RP08069 1367 aa21.3■■□□□ 1
SYNPO-201ENST00000307662 MRE11P49959 708 aa21.3■■□□□ 1
SYNPO-201ENST00000307662 CCDC144AA2RUR9 1427 aa21.3■■□□□ 1
SYNPO-201ENST00000307662 CREBRFQ8IUR6 639 aa21.3■■□□□ 1
SYNPO-201ENST00000307662 REC8O95072 547 aa21.29■■□□□ 1
SYNPO-201ENST00000307662 DDX19BQ9UMR2 479 aa21.29■■□□□ 1
SYNPO-201ENST00000307662 CCAR2Q8N163 923 aaKnown RBP21.28■■□□□ 1
SYNPO-201ENST00000307662 RASSF8Q8NHQ8 419 aa21.28■■□□□ 1
SYNPO-201ENST00000307662 FAM184AQ8NB25 1140 aa21.27■■□□□ 1
SYNPO-201ENST00000307662 NGEFQ8N5V2 710 aa21.27■□□□□ 0.99
SYNPO-201ENST00000307662 CHMP3Q9Y3E7 222 aa21.27■□□□□ 0.99
SYNPO-201ENST00000307662 NUCB2P80303 420 aa21.26■□□□□ 0.99
SYNPO-201ENST00000307662 APAF1O14727 1248 aa21.26■□□□□ 0.99
SYNPO-201ENST00000307662 CHMP4CQ96CF2 233 aa21.26■□□□□ 0.99
SYNPO-201ENST00000307662 TEX35Q5T0J7 233 aa21.26■□□□□ 0.99
SYNPO-201ENST00000307662 MAP7D2Q96T17 732 aa21.25■□□□□ 0.99
SYNPO-201ENST00000307662 WASHC2CQ9Y4E1 1318 aa21.25■□□□□ 0.99
SYNPO-201ENST00000307662 MTERF4Q7Z6M4 381 aaKnown RBP21.24■□□□□ 0.99
SYNPO-201ENST00000307662 C22orf23Q9BZE7 217 aa21.24■□□□□ 0.99
SYNPO-201ENST00000307662 DZIP1LQ8IYY4 767 aaKnown RBP21.23■□□□□ 0.99
SYNPO-201ENST00000307662 FGD5Q6ZNL6 1462 aa21.22■□□□□ 0.99
SYNPO-201ENST00000307662 PAK3O75914 559 aaPredicted RBP21.22■□□□□ 0.99
SYNPO-201ENST00000307662 TSR1Q2NL82 804 aaKnown RBP21.21■□□□□ 0.99
SYNPO-201ENST00000307662 ELL2O00472 640 aaPredicted RBP21.21■□□□□ 0.99
SYNPO-201ENST00000307662 MCTP1Q6DN14 999 aa21.21■□□□□ 0.99
SYNPO-201ENST00000307662 TPD52L1Q16890 204 aaPredicted RBP21.21■□□□□ 0.99
SYNPO-201ENST00000307662 TAF7LQ5H9L4 462 aa21.21■□□□□ 0.99
SYNPO-201ENST00000307662 BRPF3Q9ULD4 1205 aa21.21■□□□□ 0.99
SYNPO-201ENST00000307662 CNTLNQ9NXG0 1405 aa21.21■□□□□ 0.99
SYNPO-201ENST00000307662 R3HCC1Q9Y3T6 440 aaKnown RBP21.21■□□□□ 0.99
SYNPO-201ENST00000307662 TPM1P09493 284 aa21.2■□□□□ 0.98
SYNPO-201ENST00000307662 CCDC7Q96M83 1385 aa21.2■□□□□ 0.98
SYNPO-201ENST00000307662 NASPP49321 788 aaPredicted RBP21.2■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms