RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 RTEL1-TNFRSF6BF6WH68 1400 aa19.8■□□□□ 0.76
PTPN9-201ENST00000306726 SLC4A1APQ9BWU0 796 aaKnown RBP19.79■□□□□ 0.76
PTPN9-201ENST00000306726 L3MBTL2Q969R5 705 aa19.79■□□□□ 0.76
PTPN9-201ENST00000306726 PPP4R2Q9NY27 417 aa19.78■□□□□ 0.76
PTPN9-201ENST00000306726 DENND4BO75064 1496 aaPredicted RBP19.78■□□□□ 0.76
PTPN9-201ENST00000306726 ANKRD30AQ9BXX3 1397 aa19.78■□□□□ 0.76
PTPN9-201ENST00000306726 ANP32AP39687 249 aaKnown RBP19.78■□□□□ 0.76
PTPN9-201ENST00000306726 TMC1Q8TDI8 760 aa19.77■□□□□ 0.76
PTPN9-201ENST00000306726 SCAPERQ9BY12 1400 aa19.77■□□□□ 0.76
PTPN9-201ENST00000306726 PPRC1Q5VV67 1664 aaKnown RBP19.76■□□□□ 0.75
PTPN9-201ENST00000306726 C9orf84Q5VXU9 1444 aa19.76■□□□□ 0.75
PTPN9-201ENST00000306726 POGZQ7Z3K3 1410 aa19.76■□□□□ 0.75
PTPN9-201ENST00000306726 PLXNC1O60486 1568 aa19.75■□□□□ 0.75
PTPN9-201ENST00000306726 PAK3O75914 559 aaPredicted RBP19.75■□□□□ 0.75
PTPN9-201ENST00000306726 ZNF644Q9H582 1327 aaPredicted RBP19.74■□□□□ 0.75
PTPN9-201ENST00000306726 HFM1A2PYH4 1435 aa19.74■□□□□ 0.75
PTPN9-201ENST00000306726 KDM5CP41229 1560 aa19.73■□□□□ 0.75
PTPN9-201ENST00000306726 GCC2Q8IWJ2 1684 aa19.73■□□□□ 0.75
PTPN9-201ENST00000306726 WASHC2AQ641Q2 1341 aa19.73■□□□□ 0.75
PTPN9-201ENST00000306726 ZBTB47Q9UFB7 747 aaPredicted RBP19.73■□□□□ 0.75
PTPN9-201ENST00000306726 C11orf95C9JLR9 678 aaPredicted RBP19.72■□□□□ 0.75
PTPN9-201ENST00000306726 MAGI2Q86UL8 1455 aa19.72■□□□□ 0.75
PTPN9-201ENST00000306726 HNRNPMP52272 730 aaKnown RBP eCLIP19.71■□□□□ 0.75
PTPN9-201ENST00000306726 ARXQ96QS3 562 aa19.71■□□□□ 0.75
PTPN9-201ENST00000306726 ZMYM4Q5VZL5 1548 aa19.7■□□□□ 0.74
PTPN9-201ENST00000306726 ARHGEF12Q9NZN5 1544 aa19.7■□□□□ 0.74
PTPN9-201ENST00000306726 MLH3Q9UHC1 1453 aa19.7■□□□□ 0.74
PTPN9-201ENST00000306726 SPAG9O60271 1321 aaKnown RBP19.7■□□□□ 0.74
PTPN9-201ENST00000306726 INO80Q9ULG1 1556 aaPredicted RBP19.7■□□□□ 0.74
PTPN9-201ENST00000306726 RGL3Q3MIN7 710 aa19.69■□□□□ 0.74
PTPN9-201ENST00000306726 NOP58Q9Y2X3 529 aaKnown RBP19.69■□□□□ 0.74
PTPN9-201ENST00000306726 TRHP20396 242 aaPredicted RBP19.69■□□□□ 0.74
PTPN9-201ENST00000306726 TSPOAP1O95153 1857 aa19.68■□□□□ 0.74
PTPN9-201ENST00000306726 HECW2Q9P2P5 1572 aa19.68■□□□□ 0.74
PTPN9-201ENST00000306726 TRAPPC8Q9Y2L5 1435 aa19.68■□□□□ 0.74
PTPN9-201ENST00000306726 SENP3Q9H4L4 574 aaPredicted RBP19.68■□□□□ 0.74
PTPN9-201ENST00000306726 NCOA1Q15788 1441 aa19.68■□□□□ 0.74
PTPN9-201ENST00000306726 ATP7AQ04656 1500 aa19.68■□□□□ 0.74
PTPN9-201ENST00000306726 SKAP1Q86WV1 359 aa19.68■□□□□ 0.74
PTPN9-201ENST00000306726 ZFYVE16Q7Z3T8 1539 aa19.67■□□□□ 0.74
PTPN9-201ENST00000306726 DUOX2Q9NRD8 1548 aa19.66■□□□□ 0.74
PTPN9-201ENST00000306726 RICTORQ6R327 1708 aa19.66■□□□□ 0.74
PTPN9-201ENST00000306726 PTPRKQ15262 1439 aa19.66■□□□□ 0.74
PTPN9-201ENST00000306726 DAXXQ9UER7 740 aaPredicted RBP19.66■□□□□ 0.74
PTPN9-201ENST00000306726 MPHOSPH9Q99550 1183 aa19.64■□□□□ 0.73
PTPN9-201ENST00000306726 NAIPQ13075 1403 aa19.64■□□□□ 0.73
PTPN9-201ENST00000306726 ERBINQ96RT1 1412 aa19.63■□□□□ 0.73
PTPN9-201ENST00000306726 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.63■□□□□ 0.73
PTPN9-201ENST00000306726 PRKRIP1Q9H875 184 aaPredicted RBP19.63■□□□□ 0.73
PTPN9-201ENST00000306726 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.63■□□□□ 0.73
PTPN9-201ENST00000306726 KIF15Q9NS87 1388 aa19.62■□□□□ 0.73
PTPN9-201ENST00000306726 EIF5BO60841 1220 aaKnown RBP19.61■□□□□ 0.73
PTPN9-201ENST00000306726 EIF2AK4Q9P2K8 1649 aaKnown RBP19.6■□□□□ 0.73
PTPN9-201ENST00000306726 SLC4A3P48751 1232 aa19.59■□□□□ 0.73
PTPN9-201ENST00000306726 FRMPD1Q5SYB0 1578 aa19.59■□□□□ 0.73
PTPN9-201ENST00000306726 PLIN1O60240 522 aa19.59■□□□□ 0.73
PTPN9-201ENST00000306726 REREQ9P2R6 1566 aa19.58■□□□□ 0.73
PTPN9-201ENST00000306726 ANKRD50Q9ULJ7 1429 aa19.58■□□□□ 0.73
PTPN9-201ENST00000306726 AFAP1Q8N556 730 aa19.57■□□□□ 0.72
PTPN9-201ENST00000306726 KIDINS220Q9ULH0 1771 aa19.57■□□□□ 0.72
PTPN9-201ENST00000306726 KDM6BO15054 1643 aa19.57■□□□□ 0.72
PTPN9-201ENST00000306726 MYT1LQ9UL68 1186 aa19.56■□□□□ 0.72
PTPN9-201ENST00000306726 CC2D1BQ5T0F9 858 aaKnown RBP19.56■□□□□ 0.72
PTPN9-201ENST00000306726 NBPF8Q3BBV2 869 aa19.55■□□□□ 0.72
PTPN9-201ENST00000306726 DHX29Q7Z478 1369 aaKnown RBP19.54■□□□□ 0.72
PTPN9-201ENST00000306726 BCORL1Q5H9F3 1711 aa19.54■□□□□ 0.72
PTPN9-201ENST00000306726 ARHGEF40Q8TER5 1519 aa19.53■□□□□ 0.72
PTPN9-201ENST00000306726 A2MP01023 1474 aa19.53■□□□□ 0.72
PTPN9-201ENST00000306726 NEFMP07197 916 aa19.52■□□□□ 0.72
PTPN9-201ENST00000306726 FAM135AQ9P2D6 1515 aa19.52■□□□□ 0.72
PTPN9-201ENST00000306726 DIP2CQ9Y2E4 1556 aa19.52■□□□□ 0.71
PTPN9-201ENST00000306726 CARD11Q9BXL7 1154 aa19.51■□□□□ 0.71
PTPN9-201ENST00000306726 ATP10AO60312 1499 aa19.51■□□□□ 0.71
PTPN9-201ENST00000306726 TIMELESSQ9UNS1 1208 aa19.5■□□□□ 0.71
PTPN9-201ENST00000306726 KDM5DQ9BY66 1539 aa19.5■□□□□ 0.71
PTPN9-201ENST00000306726 ABCA6Q8N139 1617 aa19.5■□□□□ 0.71
PTPN9-201ENST00000306726 UNC13BO14795 1591 aa19.49■□□□□ 0.71
PTPN9-201ENST00000306726 RAPGEF3O95398 923 aa19.49■□□□□ 0.71
PTPN9-201ENST00000306726 AGLP35573 1532 aa19.49■□□□□ 0.71
PTPN9-201ENST00000306726 EXOC6Q8TAG9 804 aa19.49■□□□□ 0.71
PTPN9-201ENST00000306726 KANK1Q14678 1352 aa19.47■□□□□ 0.71
PTPN9-201ENST00000306726 RGS3P49796 1198 aa19.46■□□□□ 0.71
PTPN9-201ENST00000306726 IL27Q8NEV9 243 aa19.46■□□□□ 0.71
PTPN9-201ENST00000306726 ANO8Q9HCE9 1232 aaPredicted RBP19.46■□□□□ 0.71
PTPN9-201ENST00000306726 FANCIQ9NVI1 1328 aa19.46■□□□□ 0.71
PTPN9-201ENST00000306726 DCAF11Q8TEB1 546 aa19.46■□□□□ 0.71
PTPN9-201ENST00000306726 KIF7Q2M1P5 1343 aa19.45■□□□□ 0.7
PTPN9-201ENST00000306726 RNF17Q9BXT8 1623 aaKnown RBP19.45■□□□□ 0.7
PTPN9-201ENST00000306726 DEPDC5O75140 1603 aa19.45■□□□□ 0.7
PTPN9-201ENST00000306726 PKD2Q13563 968 aa19.44■□□□□ 0.7
PTPN9-201ENST00000306726 PPP6R1Q9UPN7 881 aa19.44■□□□□ 0.7
PTPN9-201ENST00000306726 COL17A1Q9UMD9 1497 aaPredicted RBP19.43■□□□□ 0.7
PTPN9-201ENST00000306726 PRDM15P57071 1507 aaPredicted RBP19.41■□□□□ 0.7
PTPN9-201ENST00000306726 IQGAP3Q86VI3 1631 aa19.4■□□□□ 0.7
PTPN9-201ENST00000306726 YEATS2Q9ULM3 1422 aa19.39■□□□□ 0.7
PTPN9-201ENST00000306726 CDCA7LQ96GN5 454 aa19.39■□□□□ 0.69
PTPN9-201ENST00000306726 ZC3H13Q5T200 1668 aaKnown RBP19.39■□□□□ 0.69
PTPN9-201ENST00000306726 ST20-MTHFSA0A0A6YYL1 179 aa19.37■□□□□ 0.69
PTPN9-201ENST00000306726 NUDCQ9Y266 331 aa19.37■□□□□ 0.69
PTPN9-201ENST00000306726 IPO9Q96P70 1041 aaKnown RBP19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms