RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 HDGFP51858 240 aaKnown RBP15.99■□□□□ 0.15
COL3A1-201ENST00000304636 TDRD9Q8NDG6 1382 aaKnown RBP15.98■□□□□ 0.15
COL3A1-201ENST00000304636 VSIG10Q8N0Z9 540 aa15.98■□□□□ 0.15
COL3A1-201ENST00000304636 STK26Q9P289 416 aa15.98■□□□□ 0.15
COL3A1-201ENST00000304636 TPM4P67936 248 aa15.96■□□□□ 0.15
COL3A1-201ENST00000304636 NGEFQ8N5V2 710 aa15.96■□□□□ 0.15
COL3A1-201ENST00000304636 ZKSCAN2Q63HK3 967 aa15.96■□□□□ 0.15
COL3A1-201ENST00000304636 TRIM6-TRIM34B2RNG4 842 aa15.96■□□□□ 0.15
COL3A1-201ENST00000304636 TERF2IPQ9NYB0 399 aa15.96■□□□□ 0.15
COL3A1-201ENST00000304636 CHMP5Q9NZZ3 219 aa15.96■□□□□ 0.15
COL3A1-201ENST00000304636 CCDC144AA2RUR9 1427 aa15.96■□□□□ 0.14
COL3A1-201ENST00000304636 ERCC6Q03468 1493 aa15.95■□□□□ 0.14
COL3A1-201ENST00000304636 NFKBIBQ15653 356 aa15.95■□□□□ 0.14
COL3A1-201ENST00000304636 CHMP4AQ9BY43 222 aa15.95■□□□□ 0.14
COL3A1-201ENST00000304636 LMOD3Q0VAK6 560 aa15.95■□□□□ 0.14
COL3A1-201ENST00000304636 GNL2Q13823 731 aaKnown RBP15.95■□□□□ 0.14
COL3A1-201ENST00000304636 EFCAB2Q5VUJ9 269 aa15.95■□□□□ 0.14
COL3A1-201ENST00000304636 STK31Q9BXU1 1019 aa15.95■□□□□ 0.14
COL3A1-201ENST00000304636 COG6Q9Y2V7 657 aa15.95■□□□□ 0.14
COL3A1-201ENST00000304636 SOX12O15370 315 aa15.94■□□□□ 0.14
COL3A1-201ENST00000304636 UACAQ9BZF9 1416 aa15.94■□□□□ 0.14
COL3A1-201ENST00000304636 HNRNPMP52272 730 aaKnown RBP eCLIP15.93■□□□□ 0.14
COL3A1-201ENST00000304636 KIF7Q2M1P5 1343 aa15.93■□□□□ 0.14
COL3A1-201ENST00000304636 LMOD2Q6P5Q4 547 aa15.93■□□□□ 0.14
COL3A1-201ENST00000304636 KIF21BO75037 1637 aa15.92■□□□□ 0.14
COL3A1-201ENST00000304636 SPAG9O60271 1321 aaKnown RBP15.92■□□□□ 0.14
COL3A1-201ENST00000304636 GGT6Q6P531 493 aa15.92■□□□□ 0.14
COL3A1-201ENST00000304636 GPATCH3Q96I76 525 aa15.92■□□□□ 0.14
COL3A1-201ENST00000304636 RRP7AQ9Y3A4 280 aaKnown RBP15.92■□□□□ 0.14
COL3A1-201ENST00000304636 SMARCA4P51532 1647 aa15.92■□□□□ 0.14
COL3A1-201ENST00000304636 TULP1O00294 542 aaPredicted RBP15.91■□□□□ 0.14
COL3A1-201ENST00000304636 TNNT3P45378 269 aaPredicted RBP15.91■□□□□ 0.14
COL3A1-201ENST00000304636 PDS5BQ9NTI5 1447 aa15.91■□□□□ 0.14
COL3A1-201ENST00000304636 ANKRD45Q5TZF3 282 aa15.9■□□□□ 0.14
COL3A1-201ENST00000304636 HDAC5Q9UQL6 1122 aa15.9■□□□□ 0.14
COL3A1-201ENST00000304636 NOL8Q76FK4 1167 aaKnown RBP15.9■□□□□ 0.14
COL3A1-201ENST00000304636 BCL2L13Q9BXK5 485 aa15.9■□□□□ 0.14
COL3A1-201ENST00000304636 APAF1O14727 1248 aa15.89■□□□□ 0.13
COL3A1-201ENST00000304636 AAMPQ13685 434 aa15.89■□□□□ 0.13
COL3A1-201ENST00000304636 DDX19BQ9UMR2 479 aa15.89■□□□□ 0.13
COL3A1-201ENST00000304636 KIF16BQ96L93 1317 aa15.88■□□□□ 0.13
COL3A1-201ENST00000304636 FGD6Q6ZV73 1430 aa15.88■□□□□ 0.13
COL3A1-201ENST00000304636 WASHC2AQ641Q2 1341 aa15.88■□□□□ 0.13
COL3A1-201ENST00000304636 ATP6V1DQ9Y5K8 247 aa15.88■□□□□ 0.13
COL3A1-201ENST00000304636 CADPSQ9ULU8 1353 aa15.88■□□□□ 0.13
COL3A1-201ENST00000304636 FOXD4L5Q5VV16 416 aaPredicted RBP15.87■□□□□ 0.13
COL3A1-201ENST00000304636 FOXD4L4Q8WXT5 416 aaPredicted RBP15.87■□□□□ 0.13
COL3A1-201ENST00000304636 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.87■□□□□ 0.13
COL3A1-201ENST00000304636 BRD4O60885 1362 aaPredicted RBP15.87■□□□□ 0.13
COL3A1-201ENST00000304636 SLC4A10Q6U841 1118 aa15.87■□□□□ 0.13
COL3A1-201ENST00000304636 FAM43AQ8N2R8 423 aa15.86■□□□□ 0.13
COL3A1-201ENST00000304636 HSP90B1P14625 803 aaKnown RBP15.85■□□□□ 0.13
COL3A1-201ENST00000304636 ATAD2BQ9ULI0 1458 aa15.85■□□□□ 0.13
COL3A1-201ENST00000304636 KIF3BO15066 747 aa15.85■□□□□ 0.13
COL3A1-201ENST00000304636 RRBP1Q9P2E9 1410 aaKnown RBP15.85■□□□□ 0.13
COL3A1-201ENST00000304636 CUX1P39880 1505 aa15.84■□□□□ 0.13
COL3A1-201ENST00000304636 LRRC9Q6ZRR7 1453 aa15.84■□□□□ 0.13
COL3A1-201ENST00000304636 MRE11P49959 708 aa15.84■□□□□ 0.13
COL3A1-201ENST00000304636 DZIP1LQ8IYY4 767 aaKnown RBP15.84■□□□□ 0.13
COL3A1-201ENST00000304636 CCDC34Q96HJ3 373 aa15.84■□□□□ 0.13
COL3A1-201ENST00000304636 GOLGA6L1Q8N7Z2 621 aa15.83■□□□□ 0.12
COL3A1-201ENST00000304636 MYOM3Q5VTT5 1437 aa15.83■□□□□ 0.12
COL3A1-201ENST00000304636 REC8O95072 547 aa15.83■□□□□ 0.12
COL3A1-201ENST00000304636 KIF3AQ9Y496 699 aa15.83■□□□□ 0.12
COL3A1-201ENST00000304636 MIA2Q96PC5 1412 aa15.82■□□□□ 0.12
COL3A1-201ENST00000304636 C22orf23Q9BZE7 217 aa15.82■□□□□ 0.12
COL3A1-201ENST00000304636 NUCB2P80303 420 aa15.81■□□□□ 0.12
COL3A1-201ENST00000304636 TRAK1Q9UPV9 953 aa15.81■□□□□ 0.12
COL3A1-201ENST00000304636 FAM13BQ9NYF5 915 aa15.8■□□□□ 0.12
COL3A1-201ENST00000304636 PAK3O75914 559 aaPredicted RBP15.79■□□□□ 0.12
COL3A1-201ENST00000304636 RILPL2Q969X0 211 aa15.79■□□□□ 0.12
COL3A1-201ENST00000304636 GOLGA6L19H0YKK7 550 aa15.78■□□□□ 0.12
COL3A1-201ENST00000304636 RUNDC1Q96C34 613 aa15.78■□□□□ 0.12
COL3A1-201ENST00000304636 IGF1RP08069 1367 aa15.77■□□□□ 0.12
COL3A1-201ENST00000304636 BRPF3Q9ULD4 1205 aa15.77■□□□□ 0.12
COL3A1-201ENST00000304636 BACH2Q9BYV9 841 aa15.76■□□□□ 0.11
COL3A1-201ENST00000304636 EVC2Q86UK5 1308 aa15.76■□□□□ 0.11
COL3A1-201ENST00000304636 ELL2O00472 640 aaPredicted RBP15.76■□□□□ 0.11
COL3A1-201ENST00000304636 SF3A1Q15459 793 aaKnown RBP15.75■□□□□ 0.11
COL3A1-201ENST00000304636 CHMP4CQ96CF2 233 aa15.75■□□□□ 0.11
COL3A1-201ENST00000304636 API5Q9BZZ5 524 aaKnown RBP15.75■□□□□ 0.11
COL3A1-201ENST00000304636 SMG6Q86US8 1419 aaKnown RBP15.75■□□□□ 0.11
COL3A1-201ENST00000304636 BECN2A8MW95 431 aa15.75■□□□□ 0.11
COL3A1-201ENST00000304636 H3BQV1 296 aa15.75■□□□□ 0.11
COL3A1-201ENST00000304636 IFFO2Q5TF58 517 aa15.75■□□□□ 0.11
COL3A1-201ENST00000304636 IL27Q8NEV9 243 aa15.75■□□□□ 0.11
COL3A1-201ENST00000304636 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.75■□□□□ 0.11
COL3A1-201ENST00000304636 FRAT2O75474 233 aaPredicted RBP15.74■□□□□ 0.11
COL3A1-201ENST00000304636 FOXD4L6Q3SYB3 417 aaPredicted RBP15.74■□□□□ 0.11
COL3A1-201ENST00000304636 FOXD4L3Q6VB84 417 aaPredicted RBP15.74■□□□□ 0.11
COL3A1-201ENST00000304636 MAP7D2Q96T17 732 aa15.74■□□□□ 0.11
COL3A1-201ENST00000304636 TRAK2O60296 914 aa15.74■□□□□ 0.11
COL3A1-201ENST00000304636 MLECQ14165 292 aa15.74■□□□□ 0.11
COL3A1-201ENST00000304636 INTS3Q68E01 1043 aaKnown RBP15.74■□□□□ 0.11
COL3A1-201ENST00000304636 MTERF4Q7Z6M4 381 aaKnown RBP15.74■□□□□ 0.11
COL3A1-201ENST00000304636 ZNF771Q7L3S4 317 aaPredicted RBP15.74■□□□□ 0.11
COL3A1-201ENST00000304636 NPHP1O15259 732 aa15.73■□□□□ 0.11
COL3A1-201ENST00000304636 GORABQ5T7V8 394 aa15.73■□□□□ 0.11
COL3A1-201ENST00000304636 NASPP49321 788 aaPredicted RBP15.73■□□□□ 0.11
COL3A1-201ENST00000304636 ROCK1Q13464 1354 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms