RNA–Protein interactions for RNA: ENST00000304060.9

ZNF440-201, Transcript of zinc finger protein 440, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene ZNF440, Length 4,189 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF440-201ENST00000304060 CASKIN1Q8WXD9 1431 aa9.05□□□□□ -0.96
ZNF440-201ENST00000304060 KDM5CP41229 1560 aa9.05□□□□□ -0.96
ZNF440-201ENST00000304060 ATF3P18847 181 aa9.05□□□□□ -0.96
ZNF440-201ENST00000304060 LTBP4Q8N2S1 1624 aa9.04□□□□□ -0.96
ZNF440-201ENST00000304060 DHX29Q7Z478 1369 aaKnown RBP9.04□□□□□ -0.96
ZNF440-201ENST00000304060 CEP170BQ9Y4F5 1589 aaPredicted RBP9.04□□□□□ -0.96
ZNF440-201ENST00000304060 MED1Q15648 1581 aaPredicted RBP9.04□□□□□ -0.96
ZNF440-201ENST00000304060 NGLY1Q96IV0 654 aa9.03□□□□□ -0.96
ZNF440-201ENST00000304060 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.03□□□□□ -0.96
ZNF440-201ENST00000304060 RTEL1-TNFRSF6BF6WH68 1400 aa9.03□□□□□ -0.96
ZNF440-201ENST00000304060 MIA2Q96PC5 1412 aa9.03□□□□□ -0.96
ZNF440-201ENST00000304060 LRRC9Q6ZRR7 1453 aa9.02□□□□□ -0.97
ZNF440-201ENST00000304060 SF3B2Q13435 895 aaKnown RBP9.02□□□□□ -0.97
ZNF440-201ENST00000304060 ATP7AQ04656 1500 aa9.02□□□□□ -0.97
ZNF440-201ENST00000304060 ABCC1P33527 1531 aa9.02□□□□□ -0.97
ZNF440-201ENST00000304060 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.02□□□□□ -0.97
ZNF440-201ENST00000304060 MROH2AA6NES4 1674 aa9.01□□□□□ -0.97
ZNF440-201ENST00000304060 TCOF1Q13428 1488 aaKnown RBP9.01□□□□□ -0.97
ZNF440-201ENST00000304060 RXRBP28702 533 aa9.01□□□□□ -0.97
ZNF440-201ENST00000304060 C3P01024 1663 aa9.01□□□□□ -0.97
ZNF440-201ENST00000304060 SUPT6HQ7KZ85 1726 aaKnown RBP9□□□□□ -0.97
ZNF440-201ENST00000304060 ZRANB1Q9UGI0 708 aa9□□□□□ -0.97
ZNF440-201ENST00000304060 JCADQ9P266 1359 aa9□□□□□ -0.97
ZNF440-201ENST00000304060 NUTM2BA6NNL0 878 aaPredicted RBP8.99□□□□□ -0.97
ZNF440-201ENST00000304060 NUTM2EB1AL46 878 aaPredicted RBP8.99□□□□□ -0.97
ZNF440-201ENST00000304060 NUTM2DQ5VT03 806 aaPredicted RBP8.99□□□□□ -0.97
ZNF440-201ENST00000304060 CADPS2Q86UW7 1296 aa8.99□□□□□ -0.97
ZNF440-201ENST00000304060 NUTM2AQ8IVF1 878 aaPredicted RBP8.99□□□□□ -0.97
ZNF440-201ENST00000304060 FYCO1Q9BQS8 1478 aa8.99□□□□□ -0.97
ZNF440-201ENST00000304060 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.99□□□□□ -0.97
ZNF440-201ENST00000304060 SPATA31A6Q5VVP1 1343 aa8.99□□□□□ -0.97
ZNF440-201ENST00000304060 CHGAP10645 457 aaKnown RBP8.98□□□□□ -0.97
ZNF440-201ENST00000304060 KCNA6P17658 529 aa8.98□□□□□ -0.97
ZNF440-201ENST00000304060 TRIM52Q96A61 297 aa8.98□□□□□ -0.97
ZNF440-201ENST00000304060 UGGT1Q9NYU2 1555 aa8.98□□□□□ -0.97
ZNF440-201ENST00000304060 FBXO31Q5XUX0 539 aaPredicted RBP8.97□□□□□ -0.97
ZNF440-201ENST00000304060 PZPP20742 1482 aa8.97□□□□□ -0.97
ZNF440-201ENST00000304060 STRCQ7RTU9 1775 aa8.97□□□□□ -0.97
ZNF440-201ENST00000304060 KDM5DQ9BY66 1539 aa8.97□□□□□ -0.97
ZNF440-201ENST00000304060 CCDC141Q6ZP82 1450 aa8.96□□□□□ -0.97
ZNF440-201ENST00000304060 SYCP2Q9BX26 1530 aa8.96□□□□□ -0.97
ZNF440-201ENST00000304060 PREX2Q70Z35 1606 aa8.96□□□□□ -0.97
ZNF440-201ENST00000304060 ABCA6Q8N139 1617 aa8.96□□□□□ -0.97
ZNF440-201ENST00000304060 FAM135BQ49AJ0 1406 aa8.96□□□□□ -0.98
ZNF440-201ENST00000304060 SAMD9LQ8IVG5 1584 aa8.96□□□□□ -0.98
ZNF440-201ENST00000304060 ARHGAP35Q9NRY4 1499 aa8.96□□□□□ -0.98
ZNF440-201ENST00000304060 SLC52A1Q9NWF4 448 aa8.95□□□□□ -0.98
ZNF440-201ENST00000304060 SCAF11Q99590 1463 aaKnown RBP8.94□□□□□ -0.98
ZNF440-201ENST00000304060 ITSN2Q9NZM3 1697 aa8.94□□□□□ -0.98
ZNF440-201ENST00000304060 MYO3AQ8NEV4 1616 aa8.94□□□□□ -0.98
ZNF440-201ENST00000304060 GPATCH8Q9UKJ3 1502 aaKnown RBP8.93□□□□□ -0.98
ZNF440-201ENST00000304060 HAP1P54257 671 aaPredicted RBP8.93□□□□□ -0.98
ZNF440-201ENST00000304060 CLTCQ00610 1675 aaKnown RBP8.93□□□□□ -0.98
ZNF440-201ENST00000304060 CEP162Q5TB80 1403 aa8.93□□□□□ -0.98
ZNF440-201ENST00000304060 SLAIN2Q9P270 581 aa8.93□□□□□ -0.98
ZNF440-201ENST00000304060 ADGBQ8N7X0 1667 aa8.92□□□□□ -0.98
ZNF440-201ENST00000304060 ZNF142P52746 1687 aaPredicted RBP8.91□□□□□ -0.98
ZNF440-201ENST00000304060 TMEM94Q12767 1356 aa8.91□□□□□ -0.98
ZNF440-201ENST00000304060 SYNMO15061 1565 aa8.91□□□□□ -0.98
ZNF440-201ENST00000304060 CCDC125Q86Z20 511 aa8.91□□□□□ -0.98
ZNF440-201ENST00000304060 LRRC59Q96AG4 307 aaKnown RBP8.91□□□□□ -0.98
ZNF440-201ENST00000304060 EHBP1L1Q8N3D4 1523 aa8.91□□□□□ -0.98
ZNF440-201ENST00000304060 PRKCSHP14314 528 aaPredicted RBP8.91□□□□□ -0.98
ZNF440-201ENST00000304060 RNF17Q9BXT8 1623 aaKnown RBP8.9□□□□□ -0.98
ZNF440-201ENST00000304060 RBM6P78332 1123 aaKnown RBP8.9□□□□□ -0.98
ZNF440-201ENST00000304060 MED14O60244 1454 aa8.9□□□□□ -0.98
ZNF440-201ENST00000304060 ATAD2Q6PL18 1390 aa8.89□□□□□ -0.99
ZNF440-201ENST00000304060 C19orf44Q9H6X5 657 aa8.89□□□□□ -0.99
ZNF440-201ENST00000304060 POTEAQ6S8J7 498 aa8.88□□□□□ -0.99
ZNF440-201ENST00000304060 SLC26A8Q96RN1 970 aa8.88□□□□□ -0.99
ZNF440-201ENST00000304060 FGD6Q6ZV73 1430 aa8.88□□□□□ -0.99
ZNF440-201ENST00000304060 DNMT1P26358 1616 aaKnown RBP8.88□□□□□ -0.99
ZNF440-201ENST00000304060 KIDINS220Q9ULH0 1771 aa8.88□□□□□ -0.99
ZNF440-201ENST00000304060 ANKRD30AQ9BXX3 1397 aa8.88□□□□□ -0.99
ZNF440-201ENST00000304060 LRRC7Q96NW7 1537 aa8.88□□□□□ -0.99
ZNF440-201ENST00000304060 MYOM3Q5VTT5 1437 aa8.86□□□□□ -0.99
ZNF440-201ENST00000304060 UPF1Q92900 1129 aaKnown RBP eCLIP8.86□□□□□ -0.99
ZNF440-201ENST00000304060 A0A0G2JS52 829 aa8.86□□□□□ -0.99
ZNF440-201ENST00000304060 DEPDC5O75140 1603 aa8.86□□□□□ -0.99
ZNF440-201ENST00000304060 TMEM2Q9UHN6 1383 aa8.86□□□□□ -0.99
ZNF440-201ENST00000304060 HRCP23327 699 aa8.86□□□□□ -0.99
ZNF440-201ENST00000304060 TRPC5Q9UL62 973 aaPredicted RBP8.86□□□□□ -0.99
ZNF440-201ENST00000304060 POLR1AO95602 1720 aaPredicted RBP8.85□□□□□ -0.99
ZNF440-201ENST00000304060 ZNF326Q5BKZ1 582 aaKnown RBP8.85□□□□□ -0.99
ZNF440-201ENST00000304060 QTRT2Q9H974 415 aaKnown RBP8.85□□□□□ -0.99
ZNF440-201ENST00000304060 NCOA3Q9Y6Q9 1424 aa8.85□□□□□ -0.99
ZNF440-201ENST00000304060 TBX22Q9Y458 520 aa8.85□□□□□ -0.99
ZNF440-201ENST00000304060 CDC42BPBQ9Y5S2 1711 aa8.84□□□□□ -0.99
ZNF440-201ENST00000304060 C8orf37Q96NL8 207 aa8.84□□□□□ -0.99
ZNF440-201ENST00000304060 NKTRP30414 1462 aaKnown RBP8.84□□□□□ -0.99
ZNF440-201ENST00000304060 ABCC3O15438 1527 aa8.84□□□□□ -0.99
ZNF440-201ENST00000304060 ERVK-7P63135 1459 aa8.84□□□□□ -0.99
ZNF440-201ENST00000304060 ZNF644Q9H582 1327 aaPredicted RBP8.84□□□□□ -0.99
ZNF440-201ENST00000304060 IQGAP1P46940 1657 aa8.84□□□□□ -0.99
ZNF440-201ENST00000304060 INO80Q9ULG1 1556 aaPredicted RBP8.84□□□□□ -0.99
ZNF440-201ENST00000304060 RRP7BPQ9NSQ0 103 aa8.83□□□□□ -1
ZNF440-201ENST00000304060 RPRD2Q5VT52 1461 aaKnown RBP8.83□□□□□ -1
ZNF440-201ENST00000304060 KIF15Q9NS87 1388 aa8.83□□□□□ -1
ZNF440-201ENST00000304060 NCOA2Q15596 1464 aa8.82□□□□□ -1
ZNF440-201ENST00000304060 AFF2P51816 1311 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms