RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 KIF3BO15066 747 aa23.63■■□□□ 1.37
CCDC88B-201ENST00000301897 ILDR2Q71H61 639 aa23.63■■□□□ 1.37
CCDC88B-201ENST00000301897 KDM5DQ9BY66 1539 aa23.63■■□□□ 1.37
CCDC88B-201ENST00000301897 CAMSAP2Q08AD1 1489 aa23.62■■□□□ 1.37
CCDC88B-201ENST00000301897 NCOA2Q15596 1464 aa23.62■■□□□ 1.37
CCDC88B-201ENST00000301897 UBAP1LF5GYI3 381 aa23.62■■□□□ 1.37
CCDC88B-201ENST00000301897 TNRQ92752 1358 aa23.61■■□□□ 1.37
CCDC88B-201ENST00000301897 PZPP20742 1482 aa23.61■■□□□ 1.37
CCDC88B-201ENST00000301897 WASHC2CQ9Y4E1 1318 aa23.59■■□□□ 1.37
CCDC88B-201ENST00000301897 ARHGEF5Q12774 1597 aa23.58■■□□□ 1.37
CCDC88B-201ENST00000301897 POLR1AO95602 1720 aaPredicted RBP23.58■■□□□ 1.37
CCDC88B-201ENST00000301897 TSPY4P0CV99 314 aa23.57■■□□□ 1.36
CCDC88B-201ENST00000301897 TSPY10P0CW01 314 aa23.57■■□□□ 1.36
CCDC88B-201ENST00000301897 FBXO31Q5XUX0 539 aaPredicted RBP23.54■■□□□ 1.36
CCDC88B-201ENST00000301897 NLRP1Q9C000 1473 aa23.54■■□□□ 1.36
CCDC88B-201ENST00000301897 THEMISQ8N1K5 641 aaPredicted RBP23.53■■□□□ 1.36
CCDC88B-201ENST00000301897 CPS1P31327 1500 aa23.53■■□□□ 1.36
CCDC88B-201ENST00000301897 MIA2Q96PC5 1412 aa23.52■■□□□ 1.36
CCDC88B-201ENST00000301897 ANKLE2Q86XL3 938 aa23.52■■□□□ 1.36
CCDC88B-201ENST00000301897 NEURL4Q96JN8 1562 aa23.5■■□□□ 1.35
CCDC88B-201ENST00000301897 SHANK2Q9UPX8 1470 aa23.48■■□□□ 1.35
CCDC88B-201ENST00000301897 UGGT1Q9NYU2 1555 aa23.48■■□□□ 1.35
CCDC88B-201ENST00000301897 TOM1O60784 492 aa23.47■■□□□ 1.35
CCDC88B-201ENST00000301897 LRRC9Q6ZRR7 1453 aa23.47■■□□□ 1.35
CCDC88B-201ENST00000301897 DEPDC5O75140 1603 aa23.47■■□□□ 1.35
CCDC88B-201ENST00000301897 RNF17Q9BXT8 1623 aaKnown RBP23.47■■□□□ 1.35
CCDC88B-201ENST00000301897 ZC3H13Q5T200 1668 aaKnown RBP23.46■■□□□ 1.35
CCDC88B-201ENST00000301897 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.46■■□□□ 1.353e-7■■■■■ 140.8
CCDC88B-201ENST00000301897 MAST1Q9Y2H9 1570 aa23.46■■□□□ 1.35
CCDC88B-201ENST00000301897 VPS8Q8N3P4 1428 aa23.45■■□□□ 1.34
CCDC88B-201ENST00000301897 MED14O60244 1454 aa23.44■■□□□ 1.34
CCDC88B-201ENST00000301897 EIF2AK4Q9P2K8 1649 aaKnown RBP23.44■■□□□ 1.34
CCDC88B-201ENST00000301897 NPHP4O75161 1426 aaPredicted RBP23.42■■□□□ 1.34
CCDC88B-201ENST00000301897 ABCC3O15438 1527 aa23.41■■□□□ 1.34
CCDC88B-201ENST00000301897 MAP3K1Q13233 1512 aa23.41■■□□□ 1.34
CCDC88B-201ENST00000301897 SCAF1Q9H7N4 1312 aaKnown RBP23.4■■□□□ 1.34
CCDC88B-201ENST00000301897 VWDEQ8N2E2 1590 aa23.4■■□□□ 1.34
CCDC88B-201ENST00000301897 IQGAP1P46940 1657 aa23.38■■□□□ 1.33
CCDC88B-201ENST00000301897 MYOM3Q5VTT5 1437 aa23.37■■□□□ 1.33
CCDC88B-201ENST00000301897 PIP4K2BP78356 416 aa23.37■■□□□ 1.33
CCDC88B-201ENST00000301897 ERVK-7P63135 1459 aa23.36■■□□□ 1.33
CCDC88B-201ENST00000301897 HSPA1LP34931 641 aa23.35■■□□□ 1.33
CCDC88B-201ENST00000301897 DUOX2Q9NRD8 1548 aa23.34■■□□□ 1.33
CCDC88B-201ENST00000301897 MROH1Q8NDA8 1641 aa23.32■■□□□ 1.32
CCDC88B-201ENST00000301897 CEP152O94986 1710 aa23.3■■□□□ 1.32
CCDC88B-201ENST00000301897 SYNMO15061 1565 aa23.29■■□□□ 1.32
CCDC88B-201ENST00000301897 MED1Q15648 1581 aaPredicted RBP23.29■■□□□ 1.32
CCDC88B-201ENST00000301897 KANK4Q5T7N3 995 aaPredicted RBP23.29■■□□□ 1.32
CCDC88B-201ENST00000301897 CFAP65Q6ZU64 1925 aaKnown RBP23.28■■□□□ 1.32
CCDC88B-201ENST00000301897 UBR1Q8IWV7 1749 aa23.28■■□□□ 1.32
CCDC88B-201ENST00000301897 ARHGAP31Q2M1Z3 1444 aa23.27■■□□□ 1.32
CCDC88B-201ENST00000301897 ERBINQ96RT1 1412 aa23.26■■□□□ 1.31
CCDC88B-201ENST00000301897 PRDM15P57071 1507 aaPredicted RBP23.26■■□□□ 1.31
CCDC88B-201ENST00000301897 KIF15Q9NS87 1388 aa23.26■■□□□ 1.31
CCDC88B-201ENST00000301897 SCAF11Q99590 1463 aaKnown RBP23.25■■□□□ 1.31
CCDC88B-201ENST00000301897 LRRC7Q96NW7 1537 aa23.24■■□□□ 1.31
CCDC88B-201ENST00000301897 LOC105371045A0A1W2PR82 267 aa23.24■■□□□ 1.31
CCDC88B-201ENST00000301897 CROCC2H7BZ55 1655 aa23.23■■□□□ 1.31
CCDC88B-201ENST00000301897 STRCP1A6NGW2 1772 aa23.23■■□□□ 1.31
CCDC88B-201ENST00000301897 SLIT1O75093 1534 aa23.23■■□□□ 1.31
CCDC88B-201ENST00000301897 ALKQ9UM73 1620 aa23.22■■□□□ 1.31
CCDC88B-201ENST00000301897 ARHGAP23Q9P227 1491 aa23.22■■□□□ 1.31
CCDC88B-201ENST00000301897 APLP2Q06481 763 aa23.21■■□□□ 1.31
CCDC88B-201ENST00000301897 EID1Q9Y6B2 187 aa23.21■■□□□ 1.31
CCDC88B-201ENST00000301897 KANK1Q14678 1352 aa23.2■■□□□ 1.3
CCDC88B-201ENST00000301897 PTPN23Q9H3S7 1636 aa23.19■■□□□ 1.3
CCDC88B-201ENST00000301897 ABCC5O15440 1437 aa23.19■■□□□ 1.3
CCDC88B-201ENST00000301897 TXNDC2Q86VQ3 553 aa23.19■■□□□ 1.3
CCDC88B-201ENST00000301897 RRP7BPQ9NSQ0 103 aa23.18■■□□□ 1.3
CCDC88B-201ENST00000301897 PHF23Q9BUL5 403 aaPredicted RBP23.17■■□□□ 1.3
CCDC88B-201ENST00000301897 LTKP29376 864 aa23.16■■□□□ 1.3
CCDC88B-201ENST00000301897 KDM5AP29375 1690 aaKnown RBP23.15■■□□□ 1.3
CCDC88B-201ENST00000301897 DAPK1P53355 1430 aa23.15■■□□□ 1.3
CCDC88B-201ENST00000301897 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.14■■□□□ 1.29
CCDC88B-201ENST00000301897 STAG3Q9UJ98 1225 aa23.13■■□□□ 1.29
CCDC88B-201ENST00000301897 ANKRD30AQ9BXX3 1397 aa23.13■■□□□ 1.29
CCDC88B-201ENST00000301897 TMEM2Q9UHN6 1383 aa23.13■■□□□ 1.29
CCDC88B-201ENST00000301897 FGD6Q6ZV73 1430 aa23.12■■□□□ 1.29
CCDC88B-201ENST00000301897 LMTK2Q8IWU2 1503 aa23.12■■□□□ 1.29
CCDC88B-201ENST00000301897 PIK3C2BO00750 1634 aa23.11■■□□□ 1.29
CCDC88B-201ENST00000301897 EFCAB6Q5THR3 1501 aa23.08■■□□□ 1.29
CCDC88B-201ENST00000301897 XIRP1Q702N8 1843 aaKnown RBP23.05■■□□□ 1.28
CCDC88B-201ENST00000301897 IDI1Q13907 227 aa23.04■■□□□ 1.28
CCDC88B-201ENST00000301897 SENP3Q9H4L4 574 aaPredicted RBP23.03■■□□□ 1.28
CCDC88B-201ENST00000301897 CHIC2Q9UKJ5 165 aa23.03■■□□□ 1.28
CCDC88B-201ENST00000301897 FAM135BQ49AJ0 1406 aa23.02■■□□□ 1.28
CCDC88B-201ENST00000301897 SLC52A1Q9NWF4 448 aa23.02■■□□□ 1.28
CCDC88B-201ENST00000301897 NOS1P29475 1434 aa23.01■■□□□ 1.27
CCDC88B-201ENST00000301897 KCNA6P17658 529 aa23.01■■□□□ 1.27
CCDC88B-201ENST00000301897 ADGRL2O95490 1459 aa23■■□□□ 1.27
CCDC88B-201ENST00000301897 ADGRB3O60242 1522 aa23■■□□□ 1.27
CCDC88B-201ENST00000301897 TET3O43151 1660 aa22.99■■□□□ 1.27
CCDC88B-201ENST00000301897 TMEM94Q12767 1356 aa22.99■■□□□ 1.27
CCDC88B-201ENST00000301897 RPRD2Q5VT52 1461 aaKnown RBP22.98■■□□□ 1.27
CCDC88B-201ENST00000301897 NKTRP30414 1462 aaKnown RBP22.97■■□□□ 1.27
CCDC88B-201ENST00000301897 PROSER2Q86WR7 435 aaPredicted RBP22.96■■□□□ 1.27
CCDC88B-201ENST00000301897 SLC26A8Q96RN1 970 aa22.94■■□□□ 1.26
CCDC88B-201ENST00000301897 HDGFP51858 240 aaKnown RBP22.93■■□□□ 1.26
CCDC88B-201ENST00000301897 NWD1Q149M9 1564 aa22.93■■□□□ 1.26
CCDC88B-201ENST00000301897 ANKRD50Q9ULJ7 1429 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms