RNA–Protein interactions for RNA: ENST00000300302.9

HERPUD1-201, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HERPUD1, Length 1,862 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-201ENST00000300302 TRHP20396 242 aaPredicted RBP22.58■■□□□ 1.21
HERPUD1-201ENST00000300302 KIDINS220Q9ULH0 1771 aa22.58■■□□□ 1.21
HERPUD1-201ENST00000300302 TEX14Q8IWB6 1497 aa22.58■■□□□ 1.2
HERPUD1-201ENST00000300302 MLH3Q9UHC1 1453 aa22.57■■□□□ 1.2
HERPUD1-201ENST00000300302 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.56■■□□□ 1.25e-8■□□□□ 9.6
HERPUD1-201ENST00000300302 DHX29Q7Z478 1369 aaKnown RBP22.55■■□□□ 1.2
HERPUD1-201ENST00000300302 HECW2Q9P2P5 1572 aa22.55■■□□□ 1.2
HERPUD1-201ENST00000300302 EIF2AK4Q9P2K8 1649 aaKnown RBP22.55■■□□□ 1.2
HERPUD1-201ENST00000300302 DEPDC5O75140 1603 aa22.52■■□□□ 1.19
HERPUD1-201ENST00000300302 RICTORQ6R327 1708 aa22.49■■□□□ 1.19
HERPUD1-201ENST00000300302 A2MP01023 1474 aa22.49■■□□□ 1.19
HERPUD1-201ENST00000300302 KANK1Q14678 1352 aa22.48■■□□□ 1.19
HERPUD1-201ENST00000300302 KIF3BO15066 747 aa22.47■■□□□ 1.19
HERPUD1-201ENST00000300302 L3MBTL2Q969R5 705 aa22.47■■□□□ 1.19
HERPUD1-201ENST00000300302 FRMPD1Q5SYB0 1578 aa22.45■■□□□ 1.19
HERPUD1-201ENST00000300302 COL17A1Q9UMD9 1497 aaPredicted RBP22.45■■□□□ 1.18
HERPUD1-201ENST00000300302 DIEXFQ68CQ4 756 aaKnown RBP22.45■■□□□ 1.18
HERPUD1-201ENST00000300302 ABCA6Q8N139 1617 aa22.44■■□□□ 1.18
HERPUD1-201ENST00000300302 PRDM15P57071 1507 aaPredicted RBP22.43■■□□□ 1.18
HERPUD1-201ENST00000300302 VWDEQ8N2E2 1590 aa22.42■■□□□ 1.18
HERPUD1-201ENST00000300302 CCDC144AA2RUR9 1427 aa22.4■■□□□ 1.18
HERPUD1-201ENST00000300302 TET3O43151 1660 aa22.4■■□□□ 1.18
HERPUD1-201ENST00000300302 ATP10AO60312 1499 aa22.4■■□□□ 1.18
HERPUD1-201ENST00000300302 ZMYM4Q5VZL5 1548 aa22.39■■□□□ 1.18
HERPUD1-201ENST00000300302 RNF17Q9BXT8 1623 aaKnown RBP22.39■■□□□ 1.18
HERPUD1-201ENST00000300302 BCORL1Q5H9F3 1711 aa22.39■■□□□ 1.18
HERPUD1-201ENST00000300302 YEATS2Q9ULM3 1422 aa22.39■■□□□ 1.17
HERPUD1-201ENST00000300302 DIP2CQ9Y2E4 1556 aa22.39■■□□□ 1.17
HERPUD1-201ENST00000300302 MROH1Q8NDA8 1641 aa22.39■■□□□ 1.17
HERPUD1-201ENST00000300302 E9PCH4 1651 aa22.36■■□□□ 1.17
HERPUD1-201ENST00000300302 PLA2R1Q13018 1463 aa22.35■■□□□ 1.17
HERPUD1-201ENST00000300302 LMTK2Q8IWU2 1503 aa22.32■■□□□ 1.16
HERPUD1-201ENST00000300302 SPHKAPQ2M3C7 1700 aa22.3■■□□□ 1.16
HERPUD1-201ENST00000300302 TRPM2O94759 1503 aa22.29■■□□□ 1.16
HERPUD1-201ENST00000300302 PTPRTO14522 1441 aa22.29■■□□□ 1.16
HERPUD1-201ENST00000300302 EFCAB6Q5THR3 1501 aa22.29■■□□□ 1.16
HERPUD1-201ENST00000300302 GGT6Q6P531 493 aa22.28■■□□□ 1.16
HERPUD1-201ENST00000300302 NBPF8Q3BBV2 869 aa22.27■■□□□ 1.16
HERPUD1-201ENST00000300302 CEP152O94986 1710 aa22.27■■□□□ 1.15
HERPUD1-201ENST00000300302 UHRF1BP1Q6BDS2 1440 aa22.25■■□□□ 1.15
HERPUD1-201ENST00000300302 REREQ9P2R6 1566 aa22.23■■□□□ 1.15
HERPUD1-201ENST00000300302 DCAF11Q8TEB1 546 aa22.23■■□□□ 1.15
HERPUD1-201ENST00000300302 WASHC2CQ9Y4E1 1318 aa22.23■■□□□ 1.15
HERPUD1-201ENST00000300302 EIF4G2P78344 907 aaKnown RBP eCLIP22.22■■□□□ 1.15
HERPUD1-201ENST00000300302 ABCC3O15438 1527 aa22.21■■□□□ 1.15
HERPUD1-201ENST00000300302 ZNF326Q5BKZ1 582 aaKnown RBP22.21■■□□□ 1.15
HERPUD1-201ENST00000300302 ZC3H13Q5T200 1668 aaKnown RBP22.2■■□□□ 1.14
HERPUD1-201ENST00000300302 RGL3Q3MIN7 710 aa22.2■■□□□ 1.14
HERPUD1-201ENST00000300302 ARHGEF40Q8TER5 1519 aa22.2■■□□□ 1.14
HERPUD1-201ENST00000300302 KDM2AQ9Y2K7 1162 aa22.19■■□□□ 1.14
HERPUD1-201ENST00000300302 CLTCL1P53675 1640 aa22.18■■□□□ 1.14
HERPUD1-201ENST00000300302 HIRIP3Q9BW71 556 aaPredicted RBP22.18■■□□□ 1.14
HERPUD1-201ENST00000300302 AGLP35573 1532 aa22.17■■□□□ 1.14
HERPUD1-201ENST00000300302 SPATA31E1Q6ZUB1 1445 aa22.17■■□□□ 1.14
HERPUD1-201ENST00000300302 CAMSAP1Q5T5Y3 1602 aa22.17■■□□□ 1.14
HERPUD1-201ENST00000300302 HSPA5P11021 654 aaKnown RBP22.16■■□□□ 1.14
HERPUD1-201ENST00000300302 RALGAPBQ86X10 1494 aa22.16■■□□□ 1.14
HERPUD1-201ENST00000300302 NPATQ14207 1427 aa22.15■■□□□ 1.14
HERPUD1-201ENST00000300302 NEURL4Q96JN8 1562 aa22.15■■□□□ 1.14
HERPUD1-201ENST00000300302 PRAG1Q86YV5 1406 aa22.13■■□□□ 1.13
HERPUD1-201ENST00000300302 STAC3Q96MF2 364 aa22.13■■□□□ 1.13
HERPUD1-201ENST00000300302 SIGLEC1Q9BZZ2 1709 aa22.12■■□□□ 1.13
HERPUD1-201ENST00000300302 ARHGAP31Q2M1Z3 1444 aa22.12■■□□□ 1.13
HERPUD1-201ENST00000300302 CNTLNQ9NXG0 1405 aa22.12■■□□□ 1.13
HERPUD1-201ENST00000300302 PPP6R1Q9UPN7 881 aa22.11■■□□□ 1.13
HERPUD1-201ENST00000300302 MLECQ14165 292 aa22.11■■□□□ 1.13
HERPUD1-201ENST00000300302 KIF1BO60333 1816 aa22.1■■□□□ 1.13
HERPUD1-201ENST00000300302 TRPM1Q7Z4N2 1603 aa22.07■■□□□ 1.12
HERPUD1-201ENST00000300302 ARID4BQ4LE39 1312 aaPredicted RBP22.07■■□□□ 1.12
HERPUD1-201ENST00000300302 UGGT1Q9NYU2 1555 aa22.07■■□□□ 1.12
HERPUD1-201ENST00000300302 CARD11Q9BXL7 1154 aa22.07■■□□□ 1.12
HERPUD1-201ENST00000300302 USP47Q96K76 1375 aa22.06■■□□□ 1.12
HERPUD1-201ENST00000300302 ROCK2O75116 1388 aaKnown RBP22.06■■□□□ 1.12
HERPUD1-201ENST00000300302 NOS1P29475 1434 aa22.06■■□□□ 1.12
HERPUD1-201ENST00000300302 DDX10Q13206 875 aaKnown RBP22.05■■□□□ 1.12
HERPUD1-201ENST00000300302 MIER1Q8N108 512 aa22.05■■□□□ 1.12
HERPUD1-201ENST00000300302 CFAP65Q6ZU64 1925 aaKnown RBP22.04■■□□□ 1.12
HERPUD1-201ENST00000300302 ADGRB3O60242 1522 aa22.01■■□□□ 1.11
HERPUD1-201ENST00000300302 LAMC1P11047 1609 aa22■■□□□ 1.11
HERPUD1-201ENST00000300302 MADDQ8WXG6 1647 aa22■■□□□ 1.11
HERPUD1-201ENST00000300302 GPRASP1Q5JY77 1395 aa21.99■■□□□ 1.11
HERPUD1-201ENST00000300302 PIK3C2BO00750 1634 aa21.99■■□□□ 1.11
HERPUD1-201ENST00000300302 SYNMO15061 1565 aa21.99■■□□□ 1.11
HERPUD1-201ENST00000300302 MROH2AA6NES4 1674 aa21.98■■□□□ 1.11
HERPUD1-201ENST00000300302 WASHC2AQ641Q2 1341 aa21.98■■□□□ 1.11
HERPUD1-201ENST00000300302 PREX1Q8TCU6 1659 aa21.98■■□□□ 1.11
HERPUD1-201ENST00000300302 MYOM2P54296 1465 aa21.98■■□□□ 1.11
HERPUD1-201ENST00000300302 CLTCQ00610 1675 aaKnown RBP21.97■■□□□ 1.11
HERPUD1-201ENST00000300302 SLC52A1Q9NWF4 448 aa21.97■■□□□ 1.11
HERPUD1-201ENST00000300302 POLR1AO95602 1720 aaPredicted RBP21.97■■□□□ 1.11
HERPUD1-201ENST00000300302 CHGAP10645 457 aaKnown RBP21.96■■□□□ 1.11
HERPUD1-201ENST00000300302 IFT172Q9UG01 1749 aa21.95■■□□□ 1.11
HERPUD1-201ENST00000300302 ESF1Q9H501 851 aaKnown RBP21.95■■□□□ 1.1
HERPUD1-201ENST00000300302 NBPF1Q3BBV0 1214 aa21.94■■□□□ 1.1
HERPUD1-201ENST00000300302 CCDC7Q96M83 1385 aa21.94■■□□□ 1.1
HERPUD1-201ENST00000300302 RPGRIP1LQ68CZ1 1315 aa21.94■■□□□ 1.1
HERPUD1-201ENST00000300302 ERVK-7P63135 1459 aa21.92■■□□□ 1.1
HERPUD1-201ENST00000300302 KIAA1210Q9ULL0 1709 aa21.92■■□□□ 1.1
HERPUD1-201ENST00000300302 C11orf95C9JLR9 678 aaPredicted RBP21.9■■□□□ 1.1
HERPUD1-201ENST00000300302 FBXO31Q5XUX0 539 aaPredicted RBP21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms