RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 ABCA9Q8IUA7 1624 aa33.19■■■□□ 2.9
TRIM54-201ENST00000296098 ZFYVE16Q7Z3T8 1539 aa33.19■■■□□ 2.9
TRIM54-201ENST00000296098 DCAF11Q8TEB1 546 aa33.17■■■□□ 2.9
TRIM54-201ENST00000296098 PRKRIP1Q9H875 184 aaPredicted RBP33.17■■■□□ 2.9
TRIM54-201ENST00000296098 RTEL1-TNFRSF6BF6WH68 1400 aa33.16■■■□□ 2.9
TRIM54-201ENST00000296098 ARID4BQ4LE39 1312 aaPredicted RBP33.16■■■□□ 2.9
TRIM54-201ENST00000296098 CARD11Q9BXL7 1154 aa33.15■■■□□ 2.9
TRIM54-201ENST00000296098 KDM2AQ9Y2K7 1162 aa33.15■■■□□ 2.9
TRIM54-201ENST00000296098 ATP10AO60312 1499 aa33.13■■■□□ 2.89
TRIM54-201ENST00000296098 TRPM1Q7Z4N2 1603 aa33.13■■■□□ 2.89
TRIM54-201ENST00000296098 SPAG9O60271 1321 aaKnown RBP33.12■■■□□ 2.89
TRIM54-201ENST00000296098 PRAG1Q86YV5 1406 aa33.11■■■□□ 2.89
TRIM54-201ENST00000296098 FANCAO15360 1455 aa33.11■■■□□ 2.89
TRIM54-201ENST00000296098 INO80Q9ULG1 1556 aaPredicted RBP33.08■■■□□ 2.89
TRIM54-201ENST00000296098 A2MP01023 1474 aa33.07■■■□□ 2.89
TRIM54-201ENST00000296098 ROCK2O75116 1388 aaKnown RBP33.07■■■□□ 2.88
TRIM54-201ENST00000296098 ATP7AQ04656 1500 aa33.05■■■□□ 2.88
TRIM54-201ENST00000296098 ASXL2Q76L83 1435 aa33.05■■■□□ 2.88
TRIM54-201ENST00000296098 DHX29Q7Z478 1369 aaKnown RBP33.05■■■□□ 2.88
TRIM54-201ENST00000296098 DEPDC5O75140 1603 aa33.04■■■□□ 2.88
TRIM54-201ENST00000296098 HNRNPUQ00839 825 aaKnown RBP eCLIP33.04■■■□□ 2.88
TRIM54-201ENST00000296098 AFAP1Q8N556 730 aa33.02■■■□□ 2.88
TRIM54-201ENST00000296098 EIF2AK4Q9P2K8 1649 aaKnown RBP33.02■■■□□ 2.88
TRIM54-201ENST00000296098 LAMC1P11047 1609 aa33.02■■■□□ 2.88
TRIM54-201ENST00000296098 CCDC184Q52MB2 194 aa33.01■■■□□ 2.88
TRIM54-201ENST00000296098 E9PCH4 1651 aa33.01■■■□□ 2.87
TRIM54-201ENST00000296098 POLR3GLQ9BT43 218 aa33■■■□□ 2.87
TRIM54-201ENST00000296098 ADGRL1O94910 1474 aa33■■■□□ 2.87
TRIM54-201ENST00000296098 RGL3Q3MIN7 710 aa32.98■■■□□ 2.87
TRIM54-201ENST00000296098 MRS2Q9HD23 443 aa32.98■■■□□ 2.87
TRIM54-201ENST00000296098 ST20-MTHFSA0A0A6YYL1 179 aa32.96■■■□□ 2.87
TRIM54-201ENST00000296098 GPRASP1Q5JY77 1395 aa32.95■■■□□ 2.87
TRIM54-201ENST00000296098 TET3O43151 1660 aa32.93■■■□□ 2.86
TRIM54-201ENST00000296098 SCAPERQ9BY12 1400 aa32.93■■■□□ 2.86
TRIM54-201ENST00000296098 TRPM2O94759 1503 aa32.93■■■□□ 2.86
TRIM54-201ENST00000296098 OSCARQ8IYS5 282 aa32.92■■■□□ 2.86
TRIM54-201ENST00000296098 SPHKAPQ2M3C7 1700 aa32.92■■■□□ 2.86
TRIM54-201ENST00000296098 NEFLP07196 543 aa32.92■■■□□ 2.86
TRIM54-201ENST00000296098 PRDM15P57071 1507 aaPredicted RBP32.92■■■□□ 2.86
TRIM54-201ENST00000296098 FKBP8Q14318 412 aa32.91■■■□□ 2.86
TRIM54-201ENST00000296098 VWDEQ8N2E2 1590 aa32.89■■■□□ 2.86
TRIM54-201ENST00000296098 CEP152O94986 1710 aa32.88■■■□□ 2.85
TRIM54-201ENST00000296098 RNF17Q9BXT8 1623 aaKnown RBP32.87■■■□□ 2.85
TRIM54-201ENST00000296098 FAM9BQ8IZU0 186 aa32.85■■■□□ 2.85
TRIM54-201ENST00000296098 KANK1Q14678 1352 aa32.84■■■□□ 2.85
TRIM54-201ENST00000296098 PTPRTO14522 1441 aa32.83■■■□□ 2.85
TRIM54-201ENST00000296098 CFAP74Q9C0B2 1584 aa32.83■■■□□ 2.85
TRIM54-201ENST00000296098 NBPF1Q3BBV0 1214 aa32.83■■■□□ 2.85
TRIM54-201ENST00000296098 CLTCL1P53675 1640 aa32.82■■■□□ 2.84
TRIM54-201ENST00000296098 NPM1P06748 294 aaKnown RBP eCLIP32.82■■■□□ 2.84
TRIM54-201ENST00000296098 MROH1Q8NDA8 1641 aa32.81■■■□□ 2.84
TRIM54-201ENST00000296098 KIDINS220Q9ULH0 1771 aa32.8■■■□□ 2.84
TRIM54-201ENST00000296098 MADDQ8WXG6 1647 aa32.8■■■□□ 2.84
TRIM54-201ENST00000296098 ZNF518AQ6AHZ1 1483 aa32.79■■■□□ 2.84
TRIM54-201ENST00000296098 MYT1LQ9UL68 1186 aa32.78■■■□□ 2.84
TRIM54-201ENST00000296098 COL17A1Q9UMD9 1497 aaPredicted RBP32.78■■■□□ 2.84
TRIM54-201ENST00000296098 BCANQ96GW7 911 aa32.76■■■□□ 2.83
TRIM54-201ENST00000296098 ZBED9Q6R2W3 1325 aa32.75■■■□□ 2.83
TRIM54-201ENST00000296098 KIF3BO15066 747 aa32.74■■■□□ 2.83
TRIM54-201ENST00000296098 KTN1Q86UP2 1357 aaKnown RBP32.72■■■□□ 2.83
TRIM54-201ENST00000296098 CNGB1Q14028 1251 aaPredicted RBP32.72■■■□□ 2.83
TRIM54-201ENST00000296098 CD109Q6YHK3 1445 aa32.7■■■□□ 2.82
TRIM54-201ENST00000296098 NEURL4Q96JN8 1562 aa32.69■■■□□ 2.82
TRIM54-201ENST00000296098 EFCAB6Q5THR3 1501 aa32.68■■■□□ 2.82
TRIM54-201ENST00000296098 IQGAP1P46940 1657 aa32.68■■■□□ 2.82
TRIM54-201ENST00000296098 POGZQ7Z3K3 1410 aa32.67■■■□□ 2.82
TRIM54-201ENST00000296098 TESK2Q96S53 571 aa32.66■■■□□ 2.82
TRIM54-201ENST00000296098 STAC3Q96MF2 364 aa32.65■■■□□ 2.82
TRIM54-201ENST00000296098 DISP3Q9P2K9 1392 aa32.65■■■□□ 2.82
TRIM54-201ENST00000296098 PPRC1Q5VV67 1664 aaKnown RBP32.63■■■□□ 2.81
TRIM54-201ENST00000296098 LMTK2Q8IWU2 1503 aa32.62■■■□□ 2.81
TRIM54-201ENST00000296098 RALBP1Q15311 655 aa32.62■■■□□ 2.81
TRIM54-201ENST00000296098 HECW2Q9P2P5 1572 aa32.62■■■□□ 2.81
TRIM54-201ENST00000296098 MYBBP1AQ9BQG0 1328 aaKnown RBP32.61■■■□□ 2.81
TRIM54-201ENST00000296098 MLH3Q9UHC1 1453 aa32.59■■■□□ 2.81
TRIM54-201ENST00000296098 BRD4O60885 1362 aaPredicted RBP32.58■■■□□ 2.81
TRIM54-201ENST00000296098 KIAA1210Q9ULL0 1709 aa32.58■■■□□ 2.81
TRIM54-201ENST00000296098 TMF1P82094 1093 aa32.57■■■□□ 2.8
TRIM54-201ENST00000296098 TMC1Q8TDI8 760 aa32.57■■■□□ 2.8
TRIM54-201ENST00000296098 KIF1BO60333 1816 aa32.57■■■□□ 2.8
TRIM54-201ENST00000296098 FRMPD1Q5SYB0 1578 aa32.56■■■□□ 2.8
TRIM54-201ENST00000296098 UGGT1Q9NYU2 1555 aa32.55■■■□□ 2.8
TRIM54-201ENST00000296098 PNISRQ8TF01 805 aaKnown RBP32.54■■■□□ 2.8
TRIM54-201ENST00000296098 PARD3Q8TEW0 1356 aa32.54■■■□□ 2.8
TRIM54-201ENST00000296098 SCAF11Q99590 1463 aaKnown RBP32.53■■■□□ 2.8
TRIM54-201ENST00000296098 MYOM2P54296 1465 aa32.52■■■□□ 2.8
TRIM54-201ENST00000296098 NEO1Q92859 1461 aa32.52■■■□□ 2.8
TRIM54-201ENST00000296098 ABCA6Q8N139 1617 aa32.52■■■□□ 2.8
TRIM54-201ENST00000296098 IFT172Q9UG01 1749 aa32.51■■■□□ 2.79
TRIM54-201ENST00000296098 MAP3K4Q9Y6R4 1608 aa32.51■■■□□ 2.79
TRIM54-201ENST00000296098 MROH2AA6NES4 1674 aa32.49■■■□□ 2.79
TRIM54-201ENST00000296098 PER1O15534 1290 aaPredicted RBP32.49■■■□□ 2.79
TRIM54-201ENST00000296098 LRPPRCP42704 1394 aaKnown RBP32.48■■■□□ 2.79
TRIM54-201ENST00000296098 WASHC2CQ9Y4E1 1318 aa32.47■■■□□ 2.79
TRIM54-201ENST00000296098 SMG6Q86US8 1419 aaKnown RBP32.44■■■□□ 2.78
TRIM54-201ENST00000296098 TSHZ2Q9NRE2 1034 aa32.44■■■□□ 2.78
TRIM54-201ENST00000296098 NLRP13Q86W25 1043 aa32.43■■■□□ 2.78
TRIM54-201ENST00000296098 EIF3AQ14152 1382 aaKnown RBP32.43■■■□□ 2.78
TRIM54-201ENST00000296098 ADGRB3O60242 1522 aa32.42■■■□□ 2.78
TRIM54-201ENST00000296098 IRX6P78412 446 aaPredicted RBP32.41■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms