RNA–Protein interactions for RNA: ENST00000294816.6

LMX1A-201, Transcript of LIM homeobox transcription factor 1 alpha, humanhuman

APPRIS P1 TSL 2 BASIC

Gene LMX1A, Length 3,350 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1A-201ENST00000294816 KDM5CP41229 1560 aa13.37□□□□□ -0.27
LMX1A-201ENST00000294816 NUP155O75694 1391 aa13.37□□□□□ -0.27
LMX1A-201ENST00000294816 MBD5Q9P267 1494 aa13.36□□□□□ -0.27
LMX1A-201ENST00000294816 C8orf34Q49A92 452 aa13.35□□□□□ -0.27
LMX1A-201ENST00000294816 SLKQ9H2G2 1235 aaPredicted RBP13.35□□□□□ -0.27
LMX1A-201ENST00000294816 RSPH6AQ9H0K4 717 aa13.35□□□□□ -0.27
LMX1A-201ENST00000294816 PLPPR3Q6T4P5 718 aa13.34□□□□□ -0.27
LMX1A-201ENST00000294816 KIF14Q15058 1648 aa13.34□□□□□ -0.27
LMX1A-201ENST00000294816 FAM43AQ8N2R8 423 aa13.34□□□□□ -0.27
LMX1A-201ENST00000294816 WDR43Q15061 677 aaKnown RBP eCLIP13.33□□□□□ -0.28
LMX1A-201ENST00000294816 POGKQ9P215 609 aa13.33□□□□□ -0.28
LMX1A-201ENST00000294816 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.33□□□□□ -0.28
LMX1A-201ENST00000294816 PANK3Q9H999 370 aa13.33□□□□□ -0.28
LMX1A-201ENST00000294816 RALGAPBQ86X10 1494 aa13.33□□□□□ -0.28
LMX1A-201ENST00000294816 KDM2BQ8NHM5 1336 aa13.32□□□□□ -0.28
LMX1A-201ENST00000294816 DNMT1P26358 1616 aaKnown RBP13.32□□□□□ -0.28
LMX1A-201ENST00000294816 ADAMTS8Q9UP79 889 aa13.32□□□□□ -0.28
LMX1A-201ENST00000294816 PARD3Q8TEW0 1356 aa13.32□□□□□ -0.28
LMX1A-201ENST00000294816 NBPF1Q3BBV0 1214 aa13.31□□□□□ -0.28
LMX1A-201ENST00000294816 ANKRD30AQ9BXX3 1397 aa13.31□□□□□ -0.28
LMX1A-201ENST00000294816 URB2Q14146 1524 aaKnown RBP13.3□□□□□ -0.28
LMX1A-201ENST00000294816 ANKRD50Q9ULJ7 1429 aa13.29□□□□□ -0.28
LMX1A-201ENST00000294816 PER1O15534 1290 aaPredicted RBP13.28□□□□□ -0.28
LMX1A-201ENST00000294816 WDR62O43379 1518 aa13.28□□□□□ -0.28
LMX1A-201ENST00000294816 PRG4Q92954 1404 aaPredicted RBP13.27□□□□□ -0.28
LMX1A-201ENST00000294816 GOLGA2Q08379 1002 aa13.27□□□□□ -0.28
LMX1A-201ENST00000294816 CCDC146Q8IYE0 955 aa13.27□□□□□ -0.28
LMX1A-201ENST00000294816 CAMSAP2Q08AD1 1489 aa13.27□□□□□ -0.28
LMX1A-201ENST00000294816 CANXP27824 592 aaKnown RBP13.27□□□□□ -0.29
LMX1A-201ENST00000294816 SPRYD3Q8NCJ5 442 aa13.27□□□□□ -0.29
LMX1A-201ENST00000294816 UHRF1BP1Q6BDS2 1440 aa13.27□□□□□ -0.29
LMX1A-201ENST00000294816 BECN1Q14457 450 aa13.26□□□□□ -0.29
LMX1A-201ENST00000294816 NAP1L5Q96NT1 182 aaPredicted RBP13.26□□□□□ -0.29
LMX1A-201ENST00000294816 KIF21AQ7Z4S6 1674 aa13.26□□□□□ -0.29
LMX1A-201ENST00000294816 IQGAP2Q13576 1575 aa13.26□□□□□ -0.29
LMX1A-201ENST00000294816 DUSP27Q5VZP5 1158 aa13.26□□□□□ -0.29
LMX1A-201ENST00000294816 TSPY4P0CV99 314 aa13.26□□□□□ -0.29
LMX1A-201ENST00000294816 TSPY10P0CW01 314 aa13.26□□□□□ -0.29
LMX1A-201ENST00000294816 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.26□□□□□ -0.29
LMX1A-201ENST00000294816 GZF1Q9H116 711 aaPredicted RBP13.25□□□□□ -0.29
LMX1A-201ENST00000294816 RRAGDQ9NQL2 400 aaPredicted RBP13.25□□□□□ -0.29
LMX1A-201ENST00000294816 KIAA0586Q9BVV6 1533 aa13.24□□□□□ -0.29
LMX1A-201ENST00000294816 PLEKHH1Q9ULM0 1364 aa13.23□□□□□ -0.29
LMX1A-201ENST00000294816 BCAR3O75815 825 aa13.23□□□□□ -0.29
LMX1A-201ENST00000294816 PDS5BQ9NTI5 1447 aa13.23□□□□□ -0.29
LMX1A-201ENST00000294816 DISP3Q9P2K9 1392 aa13.23□□□□□ -0.29
LMX1A-201ENST00000294816 L1TD1Q5T7N2 865 aaKnown RBP13.23□□□□□ -0.29
LMX1A-201ENST00000294816 KNSTRNQ9Y448 316 aa13.23□□□□□ -0.29
LMX1A-201ENST00000294816 BLMP54132 1417 aaPredicted RBP13.23□□□□□ -0.29
LMX1A-201ENST00000294816 SEC24BO95487 1268 aa13.23□□□□□ -0.29
LMX1A-201ENST00000294816 TMF1P82094 1093 aa13.23□□□□□ -0.29
LMX1A-201ENST00000294816 IGHDP01880 384 aa13.21□□□□□ -0.29
LMX1A-201ENST00000294816 ZMYM4Q5VZL5 1548 aa13.2□□□□□ -0.3
LMX1A-201ENST00000294816 HNRNPMP52272 730 aaKnown RBP eCLIP13.2□□□□□ -0.3
LMX1A-201ENST00000294816 NUP153P49790 1475 aaKnown RBP13.2□□□□□ -0.3
LMX1A-201ENST00000294816 PPP2R1AP30153 589 aa13.2□□□□□ -0.3
LMX1A-201ENST00000294816 UPF2Q9HAU5 1272 aaKnown RBP13.2□□□□□ -0.3
LMX1A-201ENST00000294816 KCNA4P22459 653 aa13.19□□□□□ -0.3
LMX1A-201ENST00000294816 GLIPR1L2Q4G1C9 344 aa13.19□□□□□ -0.3
LMX1A-201ENST00000294816 COG6Q9Y2V7 657 aa13.19□□□□□ -0.3
LMX1A-201ENST00000294816 APAF1O14727 1248 aa13.18□□□□□ -0.3
LMX1A-201ENST00000294816 PNNQ9H307 717 aaKnown RBP13.18□□□□□ -0.3
LMX1A-201ENST00000294816 TROQ12816 1431 aaPredicted RBP13.18□□□□□ -0.3
LMX1A-201ENST00000294816 ARHGEF12Q9NZN5 1544 aa13.18□□□□□ -0.3
LMX1A-201ENST00000294816 PLEKHH2Q8IVE3 1493 aa13.18□□□□□ -0.3
LMX1A-201ENST00000294816 SLFN5Q08AF3 891 aa13.18□□□□□ -0.3
LMX1A-201ENST00000294816 GPATCH8Q9UKJ3 1502 aaKnown RBP13.17□□□□□ -0.3
LMX1A-201ENST00000294816 GOLGA6L3A6NEY3 463 aa13.17□□□□□ -0.3
LMX1A-201ENST00000294816 PANK1Q8TE04 598 aa13.17□□□□□ -0.3
LMX1A-201ENST00000294816 SPINK5Q9NQ38 1064 aaPredicted RBP13.17□□□□□ -0.3
LMX1A-201ENST00000294816 TESK2Q96S53 571 aa13.17□□□□□ -0.3
LMX1A-201ENST00000294816 CCDC144AA2RUR9 1427 aa13.17□□□□□ -0.3
LMX1A-201ENST00000294816 VSIG10Q8N0Z9 540 aa13.17□□□□□ -0.3
LMX1A-201ENST00000294816 USP19O94966 1318 aa13.16□□□□□ -0.3
LMX1A-201ENST00000294816 C9orf84Q5VXU9 1444 aa13.16□□□□□ -0.3
LMX1A-201ENST00000294816 E9PCH4 1651 aa13.16□□□□□ -0.3
LMX1A-201ENST00000294816 ERBINQ96RT1 1412 aa13.16□□□□□ -0.3
LMX1A-201ENST00000294816 PKNOX2Q96KN3 472 aa13.16□□□□□ -0.3
LMX1A-201ENST00000294816 PANK2Q9BZ23 570 aa13.15□□□□□ -0.3
LMX1A-201ENST00000294816 PLEKHD1A6NEE1 506 aa13.15□□□□□ -0.3
LMX1A-201ENST00000294816 FBLN2P98095 1184 aa13.15□□□□□ -0.3
LMX1A-201ENST00000294816 NEUROD2Q15784 382 aa13.15□□□□□ -0.3
LMX1A-201ENST00000294816 PRAG1Q86YV5 1406 aa13.15□□□□□ -0.31
LMX1A-201ENST00000294816 ADGBQ8N7X0 1667 aa13.14□□□□□ -0.31
LMX1A-201ENST00000294816 ADGRL2O95490 1459 aa13.14□□□□□ -0.31
LMX1A-201ENST00000294816 ERCC6Q03468 1493 aa13.14□□□□□ -0.31
LMX1A-201ENST00000294816 MAPK8IP3Q9UPT6 1336 aa13.13□□□□□ -0.31
LMX1A-201ENST00000294816 XRCC6P12956 609 aaKnown RBP eCLIP13.13□□□□□ -0.31
LMX1A-201ENST00000294816 CLUAP1Q96AJ1 413 aa13.13□□□□□ -0.31
LMX1A-201ENST00000294816 COL17A1Q9UMD9 1497 aaPredicted RBP13.13□□□□□ -0.31
LMX1A-201ENST00000294816 HSP90AA1P07900 732 aaKnown RBP13.12□□□□□ -0.31
LMX1A-201ENST00000294816 ZNF608Q9ULD9 1512 aaPredicted RBP13.12□□□□□ -0.31
LMX1A-201ENST00000294816 HSP90AA2PQ14568 343 aaPredicted RBP13.12□□□□□ -0.31
LMX1A-201ENST00000294816 TBC1D2Q9BYX2 928 aa13.12□□□□□ -0.31
LMX1A-201ENST00000294816 CGNL1Q0VF96 1302 aa13.11□□□□□ -0.31
LMX1A-201ENST00000294816 CENPJQ9HC77 1338 aaPredicted RBP13.11□□□□□ -0.31
LMX1A-201ENST00000294816 EIF3AQ14152 1382 aaKnown RBP13.11□□□□□ -0.31
LMX1A-201ENST00000294816 PLB1Q6P1J6 1458 aa13.11□□□□□ -0.31
LMX1A-201ENST00000294816 RAPGEF6Q8TEU7 1601 aa13.11□□□□□ -0.31
LMX1A-201ENST00000294816 BCL2L13Q9BXK5 485 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms