RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 UHRF1BP1LA0JNW5 1464 aa15.86■□□□□ 0.13
CUX1-202ENST00000292538 WDR7Q9Y4E6 1490 aa15.86■□□□□ 0.13
CUX1-202ENST00000292538 ROCK2O75116 1388 aaKnown RBP15.85■□□□□ 0.13
CUX1-202ENST00000292538 MRS2Q9HD23 443 aa15.84■□□□□ 0.13
CUX1-202ENST00000292538 FANCAO15360 1455 aa15.84■□□□□ 0.13
CUX1-202ENST00000292538 MYO5CQ9NQX4 1742 aa15.83■□□□□ 0.12
CUX1-202ENST00000292538 GGT6Q6P531 493 aa15.82■□□□□ 0.12
CUX1-202ENST00000292538 SENP3Q9H4L4 574 aaPredicted RBP15.82■□□□□ 0.12
CUX1-202ENST00000292538 CHGAP10645 457 aaKnown RBP15.82■□□□□ 0.12
CUX1-202ENST00000292538 PRKRIP1Q9H875 184 aaPredicted RBP15.82■□□□□ 0.12
CUX1-202ENST00000292538 CNTLNQ9NXG0 1405 aa15.8■□□□□ 0.12
CUX1-202ENST00000292538 RAPGEF3O95398 923 aa15.79■□□□□ 0.12
CUX1-202ENST00000292538 SUPT16HQ9Y5B9 1047 aaKnown RBP15.79■□□□□ 0.12
CUX1-202ENST00000292538 SPATA31E1Q6ZUB1 1445 aa15.79■□□□□ 0.12
CUX1-202ENST00000292538 ADGRL1O94910 1474 aa15.78■□□□□ 0.12
CUX1-202ENST00000292538 FKBP8Q14318 412 aa15.78■□□□□ 0.12
CUX1-202ENST00000292538 PLA2R1Q13018 1463 aa15.77■□□□□ 0.11
CUX1-202ENST00000292538 DUOX2Q9NRD8 1548 aa15.76■□□□□ 0.11
CUX1-202ENST00000292538 ABCC1P33527 1531 aa15.75■□□□□ 0.11
CUX1-202ENST00000292538 CD109Q6YHK3 1445 aa15.74■□□□□ 0.11
CUX1-202ENST00000292538 ERBINQ96RT1 1412 aa15.73■□□□□ 0.11
CUX1-202ENST00000292538 KANK1Q14678 1352 aa15.73■□□□□ 0.11
CUX1-202ENST00000292538 IRX6P78412 446 aaPredicted RBP15.72■□□□□ 0.11
CUX1-202ENST00000292538 KDM5DQ9BY66 1539 aa15.72■□□□□ 0.11
CUX1-202ENST00000292538 NEFLP07196 543 aa15.72■□□□□ 0.11
CUX1-202ENST00000292538 NUTM2DQ5VT03 806 aaPredicted RBP15.69■□□□□ 0.1
CUX1-202ENST00000292538 UHRF1BP1Q6BDS2 1440 aa15.69■□□□□ 0.1
CUX1-202ENST00000292538 TMC1Q8TDI8 760 aa15.68■□□□□ 0.1
CUX1-202ENST00000292538 RALGAPBQ86X10 1494 aa15.68■□□□□ 0.1
CUX1-202ENST00000292538 MAST1Q9Y2H9 1570 aa15.68■□□□□ 0.1
CUX1-202ENST00000292538 PRAG1Q86YV5 1406 aa15.68■□□□□ 0.1
CUX1-202ENST00000292538 A2MP01023 1474 aa15.68■□□□□ 0.1
CUX1-202ENST00000292538 CC2D1BQ5T0F9 858 aaKnown RBP15.67■□□□□ 0.1
CUX1-202ENST00000292538 DHX29Q7Z478 1369 aaKnown RBP15.67■□□□□ 0.1
CUX1-202ENST00000292538 WASHC2CQ9Y4E1 1318 aa15.67■□□□□ 0.1
CUX1-202ENST00000292538 SALL2Q9Y467 1007 aaPredicted RBP15.67■□□□□ 0.1
CUX1-202ENST00000292538 FAM69CQ0P6D2 419 aa15.66■□□□□ 0.1
CUX1-202ENST00000292538 RTEL1-TNFRSF6BF6WH68 1400 aa15.66■□□□□ 0.1
CUX1-202ENST00000292538 PLXNC1O60486 1568 aa15.66■□□□□ 0.1
CUX1-202ENST00000292538 ATP7AQ04656 1500 aa15.65■□□□□ 0.1
CUX1-202ENST00000292538 ZFYVE16Q7Z3T8 1539 aa15.65■□□□□ 0.1
CUX1-202ENST00000292538 BCORL1Q5H9F3 1711 aa15.63■□□□□ 0.09
CUX1-202ENST00000292538 CFAP70Q5T0N1 1121 aa15.63■□□□□ 0.09
CUX1-202ENST00000292538 UNC13BO14795 1591 aa15.63■□□□□ 0.09
CUX1-202ENST00000292538 TMF1P82094 1093 aa15.62■□□□□ 0.09
CUX1-202ENST00000292538 PELP1Q8IZL8 1130 aaKnown RBP15.62■□□□□ 0.09
CUX1-202ENST00000292538 PANK3Q9H999 370 aa15.62■□□□□ 0.09
CUX1-202ENST00000292538 KDM5CP41229 1560 aa15.61■□□□□ 0.09
CUX1-202ENST00000292538 ABCA9Q8IUA7 1624 aa15.6■□□□□ 0.09
CUX1-202ENST00000292538 IQGAP3Q86VI3 1631 aa15.6■□□□□ 0.09
CUX1-202ENST00000292538 DISP3Q9P2K9 1392 aa15.6■□□□□ 0.09
CUX1-202ENST00000292538 TESK2Q96S53 571 aa15.59■□□□□ 0.09
CUX1-202ENST00000292538 ADGRF5Q8IZF2 1346 aa15.59■□□□□ 0.09
CUX1-202ENST00000292538 ZNF518AQ6AHZ1 1483 aa15.59■□□□□ 0.09
CUX1-202ENST00000292538 ARID4BQ4LE39 1312 aaPredicted RBP15.59■□□□□ 0.09
CUX1-202ENST00000292538 ATP10AO60312 1499 aa15.58■□□□□ 0.09
CUX1-202ENST00000292538 MLECQ14165 292 aa15.58■□□□□ 0.09
CUX1-202ENST00000292538 UGGT1Q9NYU2 1555 aa15.57■□□□□ 0.08
CUX1-202ENST00000292538 ARAP3Q8WWN8 1544 aa15.57■□□□□ 0.08
CUX1-202ENST00000292538 TMEM132EQ6IEE7 984 aa15.55■□□□□ 0.08
CUX1-202ENST00000292538 MAGI2Q86UL8 1455 aa15.55■□□□□ 0.08
CUX1-202ENST00000292538 TRAK1Q9UPV9 953 aa15.54■□□□□ 0.08
CUX1-202ENST00000292538 POGZQ7Z3K3 1410 aa15.54■□□□□ 0.08
CUX1-202ENST00000292538 SAFB2Q14151 953 aaKnown RBP eCLIP15.52■□□□□ 0.08
CUX1-202ENST00000292538 E9PCH4 1651 aa15.52■□□□□ 0.08
CUX1-202ENST00000292538 CFAP65Q6ZU64 1925 aaKnown RBP15.52■□□□□ 0.07
CUX1-202ENST00000292538 PNISRQ8TF01 805 aaKnown RBP15.51■□□□□ 0.07
CUX1-202ENST00000292538 KNSTRNQ9Y448 316 aa15.51■□□□□ 0.07
CUX1-202ENST00000292538 KTN1Q86UP2 1357 aaKnown RBP15.51■□□□□ 0.07
CUX1-202ENST00000292538 RALBP1Q15311 655 aa15.51■□□□□ 0.07
CUX1-202ENST00000292538 MYBBP1AQ9BQG0 1328 aaKnown RBP15.51■□□□□ 0.07
CUX1-202ENST00000292538 INO80Q9ULG1 1556 aaPredicted RBP15.5■□□□□ 0.07
CUX1-202ENST00000292538 GPRASP1Q5JY77 1395 aa15.5■□□□□ 0.07
CUX1-202ENST00000292538 PTPRTO14522 1441 aa15.5■□□□□ 0.07
CUX1-202ENST00000292538 PER1O15534 1290 aaPredicted RBP15.49■□□□□ 0.07
CUX1-202ENST00000292538 STAG3Q9UJ98 1225 aa15.48■□□□□ 0.07
CUX1-202ENST00000292538 ZBED9Q6R2W3 1325 aa15.48■□□□□ 0.07
CUX1-202ENST00000292538 YEATS2Q9ULM3 1422 aa15.48■□□□□ 0.07
CUX1-202ENST00000292538 TRPM1Q7Z4N2 1603 aa15.48■□□□□ 0.07
CUX1-202ENST00000292538 FBXO31Q5XUX0 539 aaPredicted RBP15.48■□□□□ 0.07
CUX1-202ENST00000292538 STK26Q9P289 416 aa15.48■□□□□ 0.07
CUX1-202ENST00000292538 KIDINS220Q9ULH0 1771 aa15.48■□□□□ 0.07
CUX1-202ENST00000292538 PRDM15P57071 1507 aaPredicted RBP15.47■□□□□ 0.07
CUX1-202ENST00000292538 CLTCL1P53675 1640 aa15.47■□□□□ 0.07
CUX1-202ENST00000292538 TRPM2O94759 1503 aa15.47■□□□□ 0.07
CUX1-202ENST00000292538 PLPPR3Q6T4P5 718 aa15.47■□□□□ 0.07
CUX1-202ENST00000292538 NPATQ14207 1427 aa15.46■□□□□ 0.07
CUX1-202ENST00000292538 NLRP13Q86W25 1043 aa15.46■□□□□ 0.07
CUX1-202ENST00000292538 NOS1P29475 1434 aa15.46■□□□□ 0.07
CUX1-202ENST00000292538 IDI1Q13907 227 aa15.45■□□□□ 0.06
CUX1-202ENST00000292538 TNNT2P45379 298 aaPredicted RBP15.44■□□□□ 0.06
CUX1-202ENST00000292538 CDCA8Q53HL2 280 aa15.44■□□□□ 0.06
CUX1-202ENST00000292538 MLH3Q9UHC1 1453 aa15.43■□□□□ 0.06
CUX1-202ENST00000292538 COL17A1Q9UMD9 1497 aaPredicted RBP15.42■□□□□ 0.06
CUX1-202ENST00000292538 STAC3Q96MF2 364 aa15.42■□□□□ 0.06
CUX1-202ENST00000292538 TET3O43151 1660 aa15.42■□□□□ 0.06
CUX1-202ENST00000292538 SCAF11Q99590 1463 aaKnown RBP15.41■□□□□ 0.06
CUX1-202ENST00000292538 EIF3AQ14152 1382 aaKnown RBP15.41■□□□□ 0.06
CUX1-202ENST00000292538 SPHKAPQ2M3C7 1700 aa15.41■□□□□ 0.06
CUX1-202ENST00000292538 MROH1Q8NDA8 1641 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms