RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 CNTLNQ9NXG0 1405 aa9.9□□□□□ -0.82
CD44-204ENST00000279452 EIF2AK4Q9P2K8 1649 aaKnown RBP9.9□□□□□ -0.82
CD44-204ENST00000279452 WASHC2CQ9Y4E1 1318 aa9.9□□□□□ -0.82
CD44-204ENST00000279452 ADGRL2O95490 1459 aa9.9□□□□□ -0.83
CD44-204ENST00000279452 PTPRKQ15262 1439 aa9.9□□□□□ -0.83
CD44-204ENST00000279452 NCOA1Q15788 1441 aa9.9□□□□□ -0.83
CD44-204ENST00000279452 CLTCQ00610 1675 aaKnown RBP9.9□□□□□ -0.83
CD44-204ENST00000279452 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP9.89□□□□□ -0.83
CD44-204ENST00000279452 KDM5DQ9BY66 1539 aa9.89□□□□□ -0.83
CD44-204ENST00000279452 ANKRD50Q9ULJ7 1429 aa9.88□□□□□ -0.83
CD44-204ENST00000279452 KANK1Q14678 1352 aa9.88□□□□□ -0.83
CD44-204ENST00000279452 RNF17Q9BXT8 1623 aaKnown RBP9.87□□□□□ -0.83
CD44-204ENST00000279452 ROCK1Q13464 1354 aa9.87□□□□□ -0.83
CD44-204ENST00000279452 ZMYM3Q14202 1370 aa9.87□□□□□ -0.83
CD44-204ENST00000279452 C3P01024 1663 aa9.87□□□□□ -0.83
CD44-204ENST00000279452 PPP6R1Q9UPN7 881 aa9.86□□□□□ -0.83
CD44-204ENST00000279452 MROH2AA6NES4 1674 aa9.86□□□□□ -0.83
CD44-204ENST00000279452 PRDM15P57071 1507 aaPredicted RBP9.85□□□□□ -0.83
CD44-204ENST00000279452 ZC3H13Q5T200 1668 aaKnown RBP9.84□□□□□ -0.83
CD44-204ENST00000279452 UHRF1BP1Q6BDS2 1440 aa9.84□□□□□ -0.83
CD44-204ENST00000279452 ABCC3O15438 1527 aa9.84□□□□□ -0.83
CD44-204ENST00000279452 FAM135AQ9P2D6 1515 aa9.84□□□□□ -0.83
CD44-204ENST00000279452 MROH1Q8NDA8 1641 aa9.84□□□□□ -0.83
CD44-204ENST00000279452 CEP152O94986 1710 aa9.83□□□□□ -0.84
CD44-204ENST00000279452 CAMSAP1Q5T5Y3 1602 aa9.82□□□□□ -0.84
CD44-204ENST00000279452 HSPA2P54652 639 aa9.82□□□□□ -0.84
CD44-204ENST00000279452 LMTK3Q96Q04 1460 aa9.82□□□□□ -0.84
CD44-204ENST00000279452 PREX1Q8TCU6 1659 aa9.82□□□□□ -0.84
CD44-204ENST00000279452 DEPDC5O75140 1603 aa9.82□□□□□ -0.84
CD44-204ENST00000279452 NPATQ14207 1427 aa9.82□□□□□ -0.84
CD44-204ENST00000279452 PZPP20742 1482 aa9.81□□□□□ -0.84
CD44-204ENST00000279452 FBXO31Q5XUX0 539 aaPredicted RBP9.81□□□□□ -0.84
CD44-204ENST00000279452 TNRQ92752 1358 aa9.8□□□□□ -0.84
CD44-204ENST00000279452 NAIPQ13075 1403 aa9.8□□□□□ -0.84
CD44-204ENST00000279452 GCC2Q8IWJ2 1684 aa9.8□□□□□ -0.84
CD44-204ENST00000279452 UNC13BO14795 1591 aa9.8□□□□□ -0.84
CD44-204ENST00000279452 NUP155O75694 1391 aa9.79□□□□□ -0.84
CD44-204ENST00000279452 MYO3AQ8NEV4 1616 aa9.79□□□□□ -0.84
CD44-204ENST00000279452 TRIM52Q96A61 297 aa9.79□□□□□ -0.84
CD44-204ENST00000279452 HFM1A2PYH4 1435 aa9.79□□□□□ -0.84
CD44-204ENST00000279452 ERVK-7P63135 1459 aa9.78□□□□□ -0.84
CD44-204ENST00000279452 EFCAB6Q5THR3 1501 aa9.77□□□□□ -0.85
CD44-204ENST00000279452 LMTK2Q8IWU2 1503 aa9.77□□□□□ -0.85
CD44-204ENST00000279452 VWDEQ8N2E2 1590 aa9.76□□□□□ -0.85
CD44-204ENST00000279452 CEP170BQ9Y4F5 1589 aaPredicted RBP9.76□□□□□ -0.85
CD44-204ENST00000279452 IQGAP3Q86VI3 1631 aa9.75□□□□□ -0.85
CD44-204ENST00000279452 TET3O43151 1660 aa9.75□□□□□ -0.85
CD44-204ENST00000279452 STAG3Q9UJ98 1225 aa9.75□□□□□ -0.85
CD44-204ENST00000279452 SPATA31D1Q6ZQQ2 1576 aa9.75□□□□□ -0.85
CD44-204ENST00000279452 ARHGAP31Q2M1Z3 1444 aa9.74□□□□□ -0.85
CD44-204ENST00000279452 A2ML1A8K2U0 1454 aa9.74□□□□□ -0.85
CD44-204ENST00000279452 NLRP1Q9C000 1473 aa9.74□□□□□ -0.85
CD44-204ENST00000279452 ZNF142P52746 1687 aaPredicted RBP9.74□□□□□ -0.85
CD44-204ENST00000279452 UGGT1Q9NYU2 1555 aa9.73□□□□□ -0.85
CD44-204ENST00000279452 SETD5Q9C0A6 1442 aa9.73□□□□□ -0.85
CD44-204ENST00000279452 RPRD2Q5VT52 1461 aaKnown RBP9.72□□□□□ -0.85
CD44-204ENST00000279452 SLC4A1APQ9BWU0 796 aaKnown RBP9.72□□□□□ -0.85
CD44-204ENST00000279452 CHGAP10645 457 aaKnown RBP9.71□□□□□ -0.86
CD44-204ENST00000279452 RAB3GAP2Q9H2M9 1393 aa9.71□□□□□ -0.86
CD44-204ENST00000279452 E9PCH4 1651 aa9.71□□□□□ -0.86
CD44-204ENST00000279452 THEMISQ8N1K5 641 aaPredicted RBP9.7□□□□□ -0.86
CD44-204ENST00000279452 NCKAP5LQ9HCH0 1330 aa9.7□□□□□ -0.86
CD44-204ENST00000279452 SYNMO15061 1565 aa9.7□□□□□ -0.86
CD44-204ENST00000279452 PIK3C2BO00750 1634 aa9.69□□□□□ -0.86
CD44-204ENST00000279452 NOS1P29475 1434 aa9.69□□□□□ -0.86
CD44-204ENST00000279452 PKD2Q13563 968 aa9.69□□□□□ -0.86
CD44-204ENST00000279452 PLA2R1Q13018 1463 aa9.68□□□□□ -0.86
CD44-204ENST00000279452 DMRT2Q9Y5R5 561 aa9.68□□□□□ -0.86
CD44-204ENST00000279452 CFAP65Q6ZU64 1925 aaKnown RBP9.68□□□□□ -0.86
CD44-204ENST00000279452 ADGRB3O60242 1522 aa9.67□□□□□ -0.86
CD44-204ENST00000279452 SETD1BQ9UPS6 1966 aaKnown RBP9.67□□□□□ -0.86
CD44-204ENST00000279452 IDI1Q13907 227 aa9.67□□□□□ -0.86
CD44-204ENST00000279452 ANKLE2Q86XL3 938 aa9.67□□□□□ -0.86
CD44-204ENST00000279452 SLC52A1Q9NWF4 448 aa9.67□□□□□ -0.86
CD44-204ENST00000279452 UBR1Q8IWV7 1749 aa9.66□□□□□ -0.86
CD44-204ENST00000279452 BCANQ96GW7 911 aa9.66□□□□□ -0.86
CD44-204ENST00000279452 MPHOSPH9Q99550 1183 aa9.66□□□□□ -0.86
CD44-204ENST00000279452 EID1Q9Y6B2 187 aa9.66□□□□□ -0.86
CD44-204ENST00000279452 SPHKAPQ2M3C7 1700 aa9.65□□□□□ -0.86
CD44-204ENST00000279452 ACIN1Q9UKV3 1341 aaKnown RBP9.65□□□□□ -0.86
CD44-204ENST00000279452 PPP1R15AO75807 674 aaPredicted RBP9.65□□□□□ -0.86
CD44-204ENST00000279452 TRIM26Q12899 539 aaPredicted RBP9.65□□□□□ -0.86
CD44-204ENST00000279452 ZNF326Q5BKZ1 582 aaKnown RBP9.65□□□□□ -0.86
CD44-204ENST00000279452 STRCQ7RTU9 1775 aa9.65□□□□□ -0.87
CD44-204ENST00000279452 TXNDC2Q86VQ3 553 aa9.64□□□□□ -0.87
CD44-204ENST00000279452 TRPM2O94759 1503 aa9.64□□□□□ -0.87
CD44-204ENST00000279452 POLR1AO95602 1720 aaPredicted RBP9.64□□□□□ -0.87
CD44-204ENST00000279452 SCAF11Q99590 1463 aaKnown RBP9.64□□□□□ -0.87
CD44-204ENST00000279452 TMEM2Q9UHN6 1383 aa9.63□□□□□ -0.87
CD44-204ENST00000279452 PIAS4Q8N2W9 510 aaPredicted RBP9.63□□□□□ -0.87
CD44-204ENST00000279452 PTPRTO14522 1441 aa9.63□□□□□ -0.87
CD44-204ENST00000279452 NPHP4O75161 1426 aaPredicted RBP9.63□□□□□ -0.87
CD44-204ENST00000279452 NUTM2DQ5VT03 806 aaPredicted RBP9.62□□□□□ -0.87
CD44-204ENST00000279452 CLTCL1P53675 1640 aa9.62□□□□□ -0.87
CD44-204ENST00000279452 CCDC144AA2RUR9 1427 aa9.62□□□□□ -0.87
CD44-204ENST00000279452 NEURL4Q96JN8 1562 aa9.62□□□□□ -0.87
CD44-204ENST00000279452 SLIT1O75093 1534 aa9.61□□□□□ -0.87
CD44-204ENST00000279452 HDGFP51858 240 aaKnown RBP9.61□□□□□ -0.87
CD44-204ENST00000279452 RIMS2Q9UQ26 1411 aa9.61□□□□□ -0.87
CD44-204ENST00000279452 KDM5AP29375 1690 aaKnown RBP9.61□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms