RNA–Protein interactions for RNA: ENST00000273342.8

COL8A1-202, Transcript of collagen type VIII alpha 1 chain, humanhuman

APPRIS P1 TSL 2 BASIC

Gene COL8A1, Length 3,029 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1-202ENST00000273342 ZNF608Q9ULD9 1512 aaPredicted RBP16.98■□□□□ 0.31
COL8A1-202ENST00000273342 IQGAP2Q13576 1575 aa16.98■□□□□ 0.31
COL8A1-202ENST00000273342 DNMT1P26358 1616 aaKnown RBP16.97■□□□□ 0.31
COL8A1-202ENST00000273342 POLR1AO95602 1720 aaPredicted RBP16.97■□□□□ 0.31
COL8A1-202ENST00000273342 PANK3Q9H999 370 aa16.96■□□□□ 0.31
COL8A1-202ENST00000273342 ANKRD50Q9ULJ7 1429 aa16.96■□□□□ 0.31
COL8A1-202ENST00000273342 DDRGK1Q96HY6 314 aa16.96■□□□□ 0.3
COL8A1-202ENST00000273342 CAMSAP2Q08AD1 1489 aa16.95■□□□□ 0.3
COL8A1-202ENST00000273342 HNRNPMP52272 730 aaKnown RBP eCLIP16.95■□□□□ 0.3
COL8A1-202ENST00000273342 PDE3BQ13370 1112 aa16.95■□□□□ 0.3
COL8A1-202ENST00000273342 ANKRD30AQ9BXX3 1397 aa16.95■□□□□ 0.3
COL8A1-202ENST00000273342 ADAMTS8Q9UP79 889 aa16.94■□□□□ 0.3
COL8A1-202ENST00000273342 NUP153P49790 1475 aaKnown RBP16.94■□□□□ 0.3
COL8A1-202ENST00000273342 FRAT2O75474 233 aaPredicted RBP16.94■□□□□ 0.3
COL8A1-202ENST00000273342 WASHC2CQ9Y4E1 1318 aa16.93■□□□□ 0.3
COL8A1-202ENST00000273342 PER1O15534 1290 aaPredicted RBP16.92■□□□□ 0.3
COL8A1-202ENST00000273342 TSPY4P0CV99 314 aa16.92■□□□□ 0.3
COL8A1-202ENST00000273342 TSPY10P0CW01 314 aa16.92■□□□□ 0.3
COL8A1-202ENST00000273342 KIF21AQ7Z4S6 1674 aa16.91■□□□□ 0.3
COL8A1-202ENST00000273342 KIF14Q15058 1648 aa16.91■□□□□ 0.3
COL8A1-202ENST00000273342 RALGAPBQ86X10 1494 aa16.91■□□□□ 0.3
COL8A1-202ENST00000273342 ARXQ96QS3 562 aa16.9■□□□□ 0.3
COL8A1-202ENST00000273342 KIAA0586Q9BVV6 1533 aa16.89■□□□□ 0.29
COL8A1-202ENST00000273342 PARD3Q8TEW0 1356 aa16.89■□□□□ 0.29
COL8A1-202ENST00000273342 CCDC146Q8IYE0 955 aa16.88■□□□□ 0.29
COL8A1-202ENST00000273342 GPATCH8Q9UKJ3 1502 aaKnown RBP16.87■□□□□ 0.29
COL8A1-202ENST00000273342 PLB1Q6P1J6 1458 aa16.87■□□□□ 0.29
COL8A1-202ENST00000273342 DISP3Q9P2K9 1392 aa16.87■□□□□ 0.29
COL8A1-202ENST00000273342 PLEKHD1A6NEE1 506 aa16.87■□□□□ 0.29
COL8A1-202ENST00000273342 WDR43Q15061 677 aaKnown RBP eCLIP16.86■□□□□ 0.29
COL8A1-202ENST00000273342 FAM161AQ3B820 660 aa16.86■□□□□ 0.29
COL8A1-202ENST00000273342 C8orf34Q49A92 452 aa16.86■□□□□ 0.29
COL8A1-202ENST00000273342 JPH4Q96JJ6 628 aa16.86■□□□□ 0.29
COL8A1-202ENST00000273342 TROQ12816 1431 aaPredicted RBP16.85■□□□□ 0.29
COL8A1-202ENST00000273342 UHRF1BP1Q6BDS2 1440 aa16.85■□□□□ 0.29
COL8A1-202ENST00000273342 CENPQQ7L2Z9 268 aaPredicted RBP16.83■□□□□ 0.28
COL8A1-202ENST00000273342 DISP1Q96F81 1524 aa16.83■□□□□ 0.28
COL8A1-202ENST00000273342 KDM2BQ8NHM5 1336 aa16.82■□□□□ 0.28
COL8A1-202ENST00000273342 SLKQ9H2G2 1235 aaPredicted RBP16.82■□□□□ 0.28
COL8A1-202ENST00000273342 PLEKHH1Q9ULM0 1364 aa16.81■□□□□ 0.28
COL8A1-202ENST00000273342 BCAR3O75815 825 aa16.81■□□□□ 0.28
COL8A1-202ENST00000273342 DUSP27Q5VZP5 1158 aa16.81■□□□□ 0.28
COL8A1-202ENST00000273342 C9orf84Q5VXU9 1444 aa16.81■□□□□ 0.28
COL8A1-202ENST00000273342 TARBP1Q13395 1621 aaKnown RBP16.81■□□□□ 0.28
COL8A1-202ENST00000273342 TESK2Q96S53 571 aa16.8■□□□□ 0.28
COL8A1-202ENST00000273342 ERCC6Q03468 1493 aa16.8■□□□□ 0.28
COL8A1-202ENST00000273342 SPINK5Q9NQ38 1064 aaPredicted RBP16.79■□□□□ 0.28
COL8A1-202ENST00000273342 TMF1P82094 1093 aa16.79■□□□□ 0.28
COL8A1-202ENST00000273342 GOLGA2Q08379 1002 aa16.79■□□□□ 0.28
COL8A1-202ENST00000273342 KNSTRNQ9Y448 316 aa16.79■□□□□ 0.28
COL8A1-202ENST00000273342 CCDC144AA2RUR9 1427 aa16.77■□□□□ 0.28
COL8A1-202ENST00000273342 RAPGEF6Q8TEU7 1601 aa16.77■□□□□ 0.28
COL8A1-202ENST00000273342 ADAMTS12P58397 1594 aa16.77■□□□□ 0.27
COL8A1-202ENST00000273342 POGKQ9P215 609 aa16.77■□□□□ 0.27
COL8A1-202ENST00000273342 SEC24BO95487 1268 aa16.76■□□□□ 0.27
COL8A1-202ENST00000273342 PPP2R1AP30153 589 aa16.76■□□□□ 0.27
COL8A1-202ENST00000273342 SPRYD3Q8NCJ5 442 aa16.76■□□□□ 0.27
COL8A1-202ENST00000273342 KIAA0556O60303 1618 aa16.76■□□□□ 0.27
COL8A1-202ENST00000273342 APAF1O14727 1248 aa16.75■□□□□ 0.27
COL8A1-202ENST00000273342 PBRM1Q86U86 1689 aa16.75■□□□□ 0.27
COL8A1-202ENST00000273342 IGHDP01880 384 aa16.75■□□□□ 0.27
COL8A1-202ENST00000273342 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.75■□□□□ 0.27
COL8A1-202ENST00000273342 NEUROD2Q15784 382 aa16.74■□□□□ 0.27
COL8A1-202ENST00000273342 PRAG1Q86YV5 1406 aa16.74■□□□□ 0.27
COL8A1-202ENST00000273342 SENP3Q9H4L4 574 aaPredicted RBP16.74■□□□□ 0.27
COL8A1-202ENST00000273342 ADGRL2O95490 1459 aa16.73■□□□□ 0.27
COL8A1-202ENST00000273342 CANXP27824 592 aaKnown RBP16.73■□□□□ 0.27
COL8A1-202ENST00000273342 BLMP54132 1417 aaPredicted RBP16.73■□□□□ 0.27
COL8A1-202ENST00000273342 MRC2Q9UBG0 1479 aa16.72■□□□□ 0.27
COL8A1-202ENST00000273342 DMRT2Q9Y5R5 561 aa16.72■□□□□ 0.27
COL8A1-202ENST00000273342 ERBINQ96RT1 1412 aa16.71■□□□□ 0.27
COL8A1-202ENST00000273342 ARHGEF12Q9NZN5 1544 aa16.71■□□□□ 0.27
COL8A1-202ENST00000273342 PANK1Q8TE04 598 aa16.71■□□□□ 0.27
COL8A1-202ENST00000273342 COG6Q9Y2V7 657 aa16.71■□□□□ 0.27
COL8A1-202ENST00000273342 ADGBQ8N7X0 1667 aa16.7■□□□□ 0.26
COL8A1-202ENST00000273342 SLFN5Q08AF3 891 aa16.69■□□□□ 0.26
COL8A1-202ENST00000273342 ZMYM4Q5VZL5 1548 aa16.68■□□□□ 0.26
COL8A1-202ENST00000273342 TNNT2P45379 298 aaPredicted RBP16.67■□□□□ 0.26
COL8A1-202ENST00000273342 GZF1Q9H116 711 aaPredicted RBP16.67■□□□□ 0.26
COL8A1-202ENST00000273342 E9PCH4 1651 aa16.67■□□□□ 0.26
COL8A1-202ENST00000273342 BCL2L13Q9BXK5 485 aa16.67■□□□□ 0.26
COL8A1-202ENST00000273342 COL17A1Q9UMD9 1497 aaPredicted RBP16.66■□□□□ 0.26
COL8A1-202ENST00000273342 GRIN2AQ12879 1464 aa16.66■□□□□ 0.26
COL8A1-202ENST00000273342 RRP7AQ9Y3A4 280 aaKnown RBP16.66■□□□□ 0.26
COL8A1-202ENST00000273342 KDM5DQ9BY66 1539 aa16.65■□□□□ 0.26
COL8A1-202ENST00000273342 A2MP01023 1474 aa16.65■□□□□ 0.26
COL8A1-202ENST00000273342 ITSN2Q9NZM3 1697 aa16.64■□□□□ 0.26
COL8A1-202ENST00000273342 AMER1Q5JTC6 1135 aaPredicted RBP16.64■□□□□ 0.26
COL8A1-202ENST00000273342 CEP170Q5SW79 1584 aa16.64■□□□□ 0.25
COL8A1-202ENST00000273342 USP19O94966 1318 aa16.64■□□□□ 0.25
COL8A1-202ENST00000273342 CLUAP1Q96AJ1 413 aa16.64■□□□□ 0.25
COL8A1-202ENST00000273342 FAM135AQ9P2D6 1515 aa16.64■□□□□ 0.25
COL8A1-202ENST00000273342 TNNQ9UQP3 1299 aa16.64■□□□□ 0.25
COL8A1-202ENST00000273342 MAGI2Q86UL8 1455 aa16.63■□□□□ 0.25
COL8A1-202ENST00000273342 ZNF521Q96K83 1311 aa16.63■□□□□ 0.25
COL8A1-202ENST00000273342 PLA2R1Q13018 1463 aa16.62■□□□□ 0.25
COL8A1-202ENST00000273342 CARMIL2Q6F5E8 1435 aa16.61■□□□□ 0.25
COL8A1-202ENST00000273342 IFT140Q96RY7 1462 aa16.61■□□□□ 0.25
COL8A1-202ENST00000273342 CROCC2H7BZ55 1655 aa16.61■□□□□ 0.25
COL8A1-202ENST00000273342 MAGI1Q96QZ7 1491 aaPredicted RBP16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms