RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 DDX10Q13206 875 aaKnown RBP21.57■■□□□ 1.04
SF3B4-201ENST00000271628 CCDC144AA2RUR9 1427 aa21.56■■□□□ 1.04
SF3B4-201ENST00000271628 YTHDC1Q96MU7 727 aaKnown RBP21.56■■□□□ 1.04
SF3B4-201ENST00000271628 HSPA5P11021 654 aaKnown RBP21.55■■□□□ 1.04
SF3B4-201ENST00000271628 DHX29Q7Z478 1369 aaKnown RBP21.55■■□□□ 1.04
SF3B4-201ENST00000271628 NEO1Q92859 1461 aa21.55■■□□□ 1.04
SF3B4-201ENST00000271628 DEPDC5O75140 1603 aa21.54■■□□□ 1.04
SF3B4-201ENST00000271628 EIF2AK4Q9P2K8 1649 aaKnown RBP21.54■■□□□ 1.04
SF3B4-201ENST00000271628 ATP10AO60312 1499 aa21.54■■□□□ 1.04
SF3B4-201ENST00000271628 UHRF1BP1Q6BDS2 1440 aa21.52■■□□□ 1.04
SF3B4-201ENST00000271628 KIDINS220Q9ULH0 1771 aa21.52■■□□□ 1.04
SF3B4-201ENST00000271628 POGZQ7Z3K3 1410 aa21.51■■□□□ 1.03
SF3B4-201ENST00000271628 KDM5CP41229 1560 aa21.5■■□□□ 1.03
SF3B4-201ENST00000271628 KANK1Q14678 1352 aa21.5■■□□□ 1.03
SF3B4-201ENST00000271628 PLA2R1Q13018 1463 aa21.5■■□□□ 1.03
SF3B4-201ENST00000271628 MLH3Q9UHC1 1453 aa21.5■■□□□ 1.03
SF3B4-201ENST00000271628 GLI2P10070 1586 aa21.49■■□□□ 1.03
SF3B4-201ENST00000271628 MAP3K4Q9Y6R4 1608 aa21.48■■□□□ 1.03
SF3B4-201ENST00000271628 KIF3BO15066 747 aa21.47■■□□□ 1.03
SF3B4-201ENST00000271628 SPATA31E1Q6ZUB1 1445 aa21.45■■□□□ 1.02
SF3B4-201ENST00000271628 DCAF11Q8TEB1 546 aa21.45■■□□□ 1.02
SF3B4-201ENST00000271628 VWDEQ8N2E2 1590 aa21.45■■□□□ 1.02
SF3B4-201ENST00000271628 HECW2Q9P2P5 1572 aa21.44■■□□□ 1.02
SF3B4-201ENST00000271628 TET3O43151 1660 aa21.44■■□□□ 1.02
SF3B4-201ENST00000271628 PRDM15P57071 1507 aaPredicted RBP21.44■■□□□ 1.02
SF3B4-201ENST00000271628 A2MP01023 1474 aa21.44■■□□□ 1.02
SF3B4-201ENST00000271628 E9PCH4 1651 aa21.44■■□□□ 1.02
SF3B4-201ENST00000271628 ZNF326Q5BKZ1 582 aaKnown RBP21.43■■□□□ 1.02
SF3B4-201ENST00000271628 RALGAPBQ86X10 1494 aa21.43■■□□□ 1.02
SF3B4-201ENST00000271628 WASHC2AQ641Q2 1341 aa21.4■■□□□ 1.02
SF3B4-201ENST00000271628 KDM2AQ9Y2K7 1162 aa21.4■■□□□ 1.02
SF3B4-201ENST00000271628 PTPRTO14522 1441 aa21.39■■□□□ 1.02
SF3B4-201ENST00000271628 ANP32CO43423 234 aa21.39■■□□□ 1.01
SF3B4-201ENST00000271628 MROH1Q8NDA8 1641 aa21.38■■□□□ 1.01
SF3B4-201ENST00000271628 TRPM2O94759 1503 aa21.38■■□□□ 1.01
SF3B4-201ENST00000271628 SPHKAPQ2M3C7 1700 aa21.38■■□□□ 1.01
SF3B4-201ENST00000271628 USP47Q96K76 1375 aa21.37■■□□□ 1.01
SF3B4-201ENST00000271628 FAM69CQ0P6D2 419 aa21.36■■□□□ 1.01
SF3B4-201ENST00000271628 RGL3Q3MIN7 710 aa21.36■■□□□ 1.01
SF3B4-201ENST00000271628 DIP2BQ9P265 1576 aa21.36■■□□□ 1.01
SF3B4-201ENST00000271628 POLR1AO95602 1720 aaPredicted RBP21.36■■□□□ 1.01
SF3B4-201ENST00000271628 RNF17Q9BXT8 1623 aaKnown RBP21.36■■□□□ 1.01
SF3B4-201ENST00000271628 BCORL1Q5H9F3 1711 aa21.35■■□□□ 1.01
SF3B4-201ENST00000271628 RAPGEF3O95398 923 aa21.35■■□□□ 1.01
SF3B4-201ENST00000271628 CARD11Q9BXL7 1154 aa21.35■■□□□ 1.01
SF3B4-201ENST00000271628 LMTK2Q8IWU2 1503 aa21.35■■□□□ 1.01
SF3B4-201ENST00000271628 CCDC7Q96M83 1385 aa21.34■■□□□ 1.01
SF3B4-201ENST00000271628 PRAG1Q86YV5 1406 aa21.34■■□□□ 1.01
SF3B4-201ENST00000271628 RICTORQ6R327 1708 aa21.34■■□□□ 1.01
SF3B4-201ENST00000271628 STAC3Q96MF2 364 aa21.33■■□□□ 1.01
SF3B4-201ENST00000271628 ABCA6Q8N139 1617 aa21.33■■□□□ 1
SF3B4-201ENST00000271628 FRMPD1Q5SYB0 1578 aa21.32■■□□□ 1
SF3B4-201ENST00000271628 CEP152O94986 1710 aa21.31■■□□□ 1
SF3B4-201ENST00000271628 CCER2I3L3R5 266 aa21.31■■□□□ 1
SF3B4-201ENST00000271628 ARID4BQ4LE39 1312 aaPredicted RBP21.31■■□□□ 1
SF3B4-201ENST00000271628 EFCAB6Q5THR3 1501 aa21.31■■□□□ 1
SF3B4-201ENST00000271628 TRPM1Q7Z4N2 1603 aa21.3■■□□□ 1
SF3B4-201ENST00000271628 ROCK2O75116 1388 aaKnown RBP21.3■■□□□ 1
SF3B4-201ENST00000271628 C11orf95C9JLR9 678 aaPredicted RBP21.3■■□□□ 1
SF3B4-201ENST00000271628 CNTLNQ9NXG0 1405 aa21.28■■□□□ 1
SF3B4-201ENST00000271628 NEURL4Q96JN8 1562 aa21.28■■□□□ 1
SF3B4-201ENST00000271628 DIP2CQ9Y2E4 1556 aa21.27■■□□□ 1
SF3B4-201ENST00000271628 KIF7Q2M1P5 1343 aa21.27■■□□□ 1
SF3B4-201ENST00000271628 CLTCL1P53675 1640 aa21.27■□□□□ 0.99
SF3B4-201ENST00000271628 GGT6Q6P531 493 aa21.26■□□□□ 0.99
SF3B4-201ENST00000271628 GPRASP1Q5JY77 1395 aa21.25■□□□□ 0.99
SF3B4-201ENST00000271628 PPRC1Q5VV67 1664 aaKnown RBP21.25■□□□□ 0.99
SF3B4-201ENST00000271628 LAMC1P11047 1609 aa21.25■□□□□ 0.99
SF3B4-201ENST00000271628 ZMYM4Q5VZL5 1548 aa21.23■□□□□ 0.99
SF3B4-201ENST00000271628 WASHC2CQ9Y4E1 1318 aa21.22■□□□□ 0.99
SF3B4-201ENST00000271628 TSPOAP1O95153 1857 aa21.21■□□□□ 0.99
SF3B4-201ENST00000271628 ST20-MTHFSA0A0A6YYL1 179 aa21.2■□□□□ 0.99
SF3B4-201ENST00000271628 KIF1BO60333 1816 aa21.2■□□□□ 0.98
SF3B4-201ENST00000271628 ABCC3O15438 1527 aa21.18■□□□□ 0.98
SF3B4-201ENST00000271628 NBPF1Q3BBV0 1214 aa21.18■□□□□ 0.98
SF3B4-201ENST00000271628 YEATS2Q9ULM3 1422 aa21.18■□□□□ 0.98
SF3B4-201ENST00000271628 NPATQ14207 1427 aa21.17■□□□□ 0.98
SF3B4-201ENST00000271628 MADDQ8WXG6 1647 aa21.16■□□□□ 0.98
SF3B4-201ENST00000271628 ZC3H13Q5T200 1668 aaKnown RBP21.16■□□□□ 0.98
SF3B4-201ENST00000271628 KIF13AQ9H1H9 1805 aa21.14■□□□□ 0.98
SF3B4-201ENST00000271628 CAMSAP1Q5T5Y3 1602 aa21.14■□□□□ 0.97
SF3B4-201ENST00000271628 ARHGAP31Q2M1Z3 1444 aa21.12■□□□□ 0.97
SF3B4-201ENST00000271628 UGGT1Q9NYU2 1555 aa21.12■□□□□ 0.97
SF3B4-201ENST00000271628 REREQ9P2R6 1566 aa21.11■□□□□ 0.97
SF3B4-201ENST00000271628 MYOM2P54296 1465 aa21.11■□□□□ 0.97
SF3B4-201ENST00000271628 KIAA1210Q9ULL0 1709 aa21.1■□□□□ 0.97
SF3B4-201ENST00000271628 POLR3GLQ9BT43 218 aa21.09■□□□□ 0.97
SF3B4-201ENST00000271628 PRKRIP1Q9H875 184 aaPredicted RBP21.09■□□□□ 0.97
SF3B4-201ENST00000271628 NOS1P29475 1434 aa21.08■□□□□ 0.97
SF3B4-201ENST00000271628 ADGRB3O60242 1522 aa21.08■□□□□ 0.96
SF3B4-201ENST00000271628 CFAP65Q6ZU64 1925 aaKnown RBP21.08■□□□□ 0.96
SF3B4-201ENST00000271628 IFT172Q9UG01 1749 aa21.07■□□□□ 0.96
SF3B4-201ENST00000271628 PPP6R1Q9UPN7 881 aa21.07■□□□□ 0.96
SF3B4-201ENST00000271628 AGLP35573 1532 aa21.06■□□□□ 0.96
SF3B4-201ENST00000271628 MROH2AA6NES4 1674 aa21.05■□□□□ 0.96
SF3B4-201ENST00000271628 RPGRIP1LQ68CZ1 1315 aa21.05■□□□□ 0.96
SF3B4-201ENST00000271628 IQGAP1P46940 1657 aa21.03■□□□□ 0.96
SF3B4-201ENST00000271628 SCAF11Q99590 1463 aaKnown RBP21.03■□□□□ 0.96
SF3B4-201ENST00000271628 TESK2Q96S53 571 aa21.03■□□□□ 0.96
SF3B4-201ENST00000271628 CHGAP10645 457 aaKnown RBP21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms