RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 EIF2AK4Q9P2K8 1649 aaKnown RBP20.45■□□□□ 0.86
SS18-201ENST00000269137 FOXD1Q16676 465 aa20.45■□□□□ 0.86
SS18-201ENST00000269137 IQGAP3Q86VI3 1631 aa20.45■□□□□ 0.86
SS18-201ENST00000269137 DEPDC5O75140 1603 aa20.42■□□□□ 0.86
SS18-201ENST00000269137 A2MP01023 1474 aa20.42■□□□□ 0.86
SS18-201ENST00000269137 FRMPD1Q5SYB0 1578 aa20.42■□□□□ 0.86
SS18-201ENST00000269137 ZMYM4Q5VZL5 1548 aa20.41■□□□□ 0.86
SS18-201ENST00000269137 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.4■□□□□ 0.862e-7■■■□□ 19
SS18-201ENST00000269137 TONSLQ96HA7 1378 aa20.4■□□□□ 0.86
SS18-201ENST00000269137 ABCA6Q8N139 1617 aa20.39■□□□□ 0.85
SS18-201ENST00000269137 RPRD2Q5VT52 1461 aaKnown RBP20.39■□□□□ 0.85
SS18-201ENST00000269137 KIF3BO15066 747 aa20.37■□□□□ 0.85
SS18-201ENST00000269137 DIP2CQ9Y2E4 1556 aa20.37■□□□□ 0.85
SS18-201ENST00000269137 BCORL1Q5H9F3 1711 aa20.36■□□□□ 0.85
SS18-201ENST00000269137 VWDEQ8N2E2 1590 aa20.36■□□□□ 0.85
SS18-201ENST00000269137 PPP1R15AO75807 674 aaPredicted RBP20.36■□□□□ 0.85
SS18-201ENST00000269137 PRDM15P57071 1507 aaPredicted RBP20.35■□□□□ 0.85
SS18-201ENST00000269137 RNF17Q9BXT8 1623 aaKnown RBP20.34■□□□□ 0.85
SS18-201ENST00000269137 KANK1Q14678 1352 aa20.34■□□□□ 0.85
SS18-201ENST00000269137 MROH1Q8NDA8 1641 aa20.34■□□□□ 0.85
SS18-201ENST00000269137 YEATS2Q9ULM3 1422 aa20.32■□□□□ 0.84
SS18-201ENST00000269137 ATP10AO60312 1499 aa20.3■□□□□ 0.84
SS18-201ENST00000269137 COL17A1Q9UMD9 1497 aaPredicted RBP20.3■□□□□ 0.84
SS18-201ENST00000269137 TET3O43151 1660 aa20.29■□□□□ 0.84
SS18-201ENST00000269137 PLA2R1Q13018 1463 aa20.27■□□□□ 0.84
SS18-201ENST00000269137 LMTK2Q8IWU2 1503 aa20.27■□□□□ 0.84
SS18-201ENST00000269137 L3MBTL2Q969R5 705 aa20.27■□□□□ 0.84
SS18-201ENST00000269137 ZNF316A6NFI3 1004 aaPredicted RBP20.26■□□□□ 0.83
SS18-201ENST00000269137 REREQ9P2R6 1566 aa20.26■□□□□ 0.83
SS18-201ENST00000269137 E9PCH4 1651 aa20.25■□□□□ 0.83
SS18-201ENST00000269137 CCDC144AA2RUR9 1427 aa20.23■□□□□ 0.83
SS18-201ENST00000269137 PTPRTO14522 1441 aa20.22■□□□□ 0.83
SS18-201ENST00000269137 EFCAB6Q5THR3 1501 aa20.21■□□□□ 0.83
SS18-201ENST00000269137 TRHP20396 242 aaPredicted RBP20.2■□□□□ 0.82
SS18-201ENST00000269137 GGT6Q6P531 493 aa20.2■□□□□ 0.82
SS18-201ENST00000269137 AGLP35573 1532 aa20.2■□□□□ 0.82
SS18-201ENST00000269137 ARHGEF40Q8TER5 1519 aa20.2■□□□□ 0.82
SS18-201ENST00000269137 ABCC3O15438 1527 aa20.18■□□□□ 0.82
SS18-201ENST00000269137 TRPM2O94759 1503 aa20.18■□□□□ 0.82
SS18-201ENST00000269137 CEP152O94986 1710 aa20.18■□□□□ 0.82
SS18-201ENST00000269137 SPHKAPQ2M3C7 1700 aa20.17■□□□□ 0.82
SS18-201ENST00000269137 WASHC2CQ9Y4E1 1318 aa20.16■□□□□ 0.82
SS18-201ENST00000269137 ZC3H13Q5T200 1668 aaKnown RBP20.14■□□□□ 0.81
SS18-201ENST00000269137 PPP6R1Q9UPN7 881 aa20.13■□□□□ 0.81
SS18-201ENST00000269137 NPATQ14207 1427 aa20.12■□□□□ 0.81
SS18-201ENST00000269137 ARHGAP31Q2M1Z3 1444 aa20.11■□□□□ 0.81
SS18-201ENST00000269137 CAMSAP1Q5T5Y3 1602 aa20.11■□□□□ 0.81
SS18-201ENST00000269137 UHRF1BP1Q6BDS2 1440 aa20.1■□□□□ 0.81
SS18-201ENST00000269137 NBPF8Q3BBV2 869 aa20.1■□□□□ 0.81
SS18-201ENST00000269137 SPATA31E1Q6ZUB1 1445 aa20.09■□□□□ 0.81
SS18-201ENST00000269137 CLTCL1P53675 1640 aa20.08■□□□□ 0.81
SS18-201ENST00000269137 SIGLEC1Q9BZZ2 1709 aa20.08■□□□□ 0.81
SS18-201ENST00000269137 NEURL4Q96JN8 1562 aa20.07■□□□□ 0.8
SS18-201ENST00000269137 CNTLNQ9NXG0 1405 aa20.06■□□□□ 0.8
SS18-201ENST00000269137 DCAF11Q8TEB1 546 aa20.05■□□□□ 0.8
SS18-201ENST00000269137 NOS1P29475 1434 aa20.05■□□□□ 0.8
SS18-201ENST00000269137 RGL3Q3MIN7 710 aa20.03■□□□□ 0.8
SS18-201ENST00000269137 CFAP65Q6ZU64 1925 aaKnown RBP20.02■□□□□ 0.8
SS18-201ENST00000269137 STAC3Q96MF2 364 aa20.02■□□□□ 0.79
SS18-201ENST00000269137 DIEXFQ68CQ4 756 aaKnown RBP20■□□□□ 0.79
SS18-201ENST00000269137 KDM2AQ9Y2K7 1162 aa20■□□□□ 0.79
SS18-201ENST00000269137 RALGAPBQ86X10 1494 aa20■□□□□ 0.79
SS18-201ENST00000269137 UGGT1Q9NYU2 1555 aa19.99■□□□□ 0.79
SS18-201ENST00000269137 KIF1BO60333 1816 aa19.99■□□□□ 0.79
SS18-201ENST00000269137 PRAG1Q86YV5 1406 aa19.99■□□□□ 0.79
SS18-201ENST00000269137 ZNF326Q5BKZ1 582 aaKnown RBP19.97■□□□□ 0.79
SS18-201ENST00000269137 EIF4G2P78344 907 aaKnown RBP eCLIP19.97■□□□□ 0.79
SS18-201ENST00000269137 PIK3C2BO00750 1634 aa19.96■□□□□ 0.79
SS18-201ENST00000269137 SYNMO15061 1565 aa19.96■□□□□ 0.79
SS18-201ENST00000269137 CLTCQ00610 1675 aaKnown RBP19.96■□□□□ 0.79
SS18-201ENST00000269137 PREX1Q8TCU6 1659 aa19.95■□□□□ 0.78
SS18-201ENST00000269137 ADGRB3O60242 1522 aa19.95■□□□□ 0.78
SS18-201ENST00000269137 MLECQ14165 292 aa19.95■□□□□ 0.78
SS18-201ENST00000269137 ARID4BQ4LE39 1312 aaPredicted RBP19.94■□□□□ 0.78
SS18-201ENST00000269137 SLC52A1Q9NWF4 448 aa19.94■□□□□ 0.78
SS18-201ENST00000269137 HSPA5P11021 654 aaKnown RBP19.93■□□□□ 0.78
SS18-201ENST00000269137 ERVK-7P63135 1459 aa19.92■□□□□ 0.78
SS18-201ENST00000269137 TRPM1Q7Z4N2 1603 aa19.91■□□□□ 0.78
SS18-201ENST00000269137 HIRIP3Q9BW71 556 aaPredicted RBP19.9■□□□□ 0.78
SS18-201ENST00000269137 ESF1Q9H501 851 aaKnown RBP19.9■□□□□ 0.78
SS18-201ENST00000269137 MROH2AA6NES4 1674 aa19.9■□□□□ 0.78
SS18-201ENST00000269137 GPRASP1Q5JY77 1395 aa19.89■□□□□ 0.78
SS18-201ENST00000269137 MYOM2P54296 1465 aa19.89■□□□□ 0.78
SS18-201ENST00000269137 MADDQ8WXG6 1647 aa19.89■□□□□ 0.77
SS18-201ENST00000269137 SPATA31D1Q6ZQQ2 1576 aa19.89■□□□□ 0.77
SS18-201ENST00000269137 IDI1Q13907 227 aa19.88■□□□□ 0.77
SS18-201ENST00000269137 FBXO31Q5XUX0 539 aaPredicted RBP19.88■□□□□ 0.77
SS18-201ENST00000269137 ZMYM3Q14202 1370 aa19.88■□□□□ 0.77
SS18-201ENST00000269137 IFT172Q9UG01 1749 aa19.88■□□□□ 0.77
SS18-201ENST00000269137 RPGRIP1LQ68CZ1 1315 aa19.88■□□□□ 0.77
SS18-201ENST00000269137 ROCK2O75116 1388 aaKnown RBP19.88■□□□□ 0.77
SS18-201ENST00000269137 CARD11Q9BXL7 1154 aa19.87■□□□□ 0.77
SS18-201ENST00000269137 USP47Q96K76 1375 aa19.87■□□□□ 0.77
SS18-201ENST00000269137 LAMC1P11047 1609 aa19.85■□□□□ 0.77
SS18-201ENST00000269137 CHGAP10645 457 aaKnown RBP19.85■□□□□ 0.77
SS18-201ENST00000269137 NRXN1Q9ULB1 1477 aa19.84■□□□□ 0.77
SS18-201ENST00000269137 PPLO60437 1756 aa19.83■□□□□ 0.76
SS18-201ENST00000269137 NBPF1Q3BBV0 1214 aa19.83■□□□□ 0.76
SS18-201ENST00000269137 KIAA1210Q9ULL0 1709 aa19.82■□□□□ 0.76
SS18-201ENST00000269137 TMEM131LA2VDJ0 1609 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms