RNA–Protein interactions for RNA: ENST00000267996.11

TPM1-201, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,670 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-201ENST00000267996 DEPDC5O75140 1603 aa23.6■■□□□ 1.37
TPM1-201ENST00000267996 RICTORQ6R327 1708 aa23.6■■□□□ 1.37
TPM1-201ENST00000267996 KIF13AQ9H1H9 1805 aa23.57■■□□□ 1.36
TPM1-201ENST00000267996 TEX14Q8IWB6 1497 aa23.57■■□□□ 1.36
TPM1-201ENST00000267996 A2MP01023 1474 aa23.56■■□□□ 1.36
TPM1-201ENST00000267996 RAPGEF3O95398 923 aa23.55■■□□□ 1.36
TPM1-201ENST00000267996 GRWD1Q9BQ67 446 aaKnown RBP eCLIP23.55■■□□□ 1.369e-7■■■□□ 19
TPM1-201ENST00000267996 MYT1LQ9UL68 1186 aa23.55■■□□□ 1.36
TPM1-201ENST00000267996 VWDEQ8N2E2 1590 aa23.53■■□□□ 1.36
TPM1-201ENST00000267996 FRMPD1Q5SYB0 1578 aa23.53■■□□□ 1.36
TPM1-201ENST00000267996 ABCA6Q8N139 1617 aa23.53■■□□□ 1.36
TPM1-201ENST00000267996 TSPOAP1O95153 1857 aa23.52■■□□□ 1.36
TPM1-201ENST00000267996 MROH1Q8NDA8 1641 aa23.51■■□□□ 1.35
TPM1-201ENST00000267996 L3MBTL2Q969R5 705 aa23.51■■□□□ 1.35
TPM1-201ENST00000267996 PRDM15P57071 1507 aaPredicted RBP23.5■■□□□ 1.35
TPM1-201ENST00000267996 ZMYM4Q5VZL5 1548 aa23.5■■□□□ 1.35
TPM1-201ENST00000267996 KIF3BO15066 747 aa23.49■■□□□ 1.35
TPM1-201ENST00000267996 ATP10AO60312 1499 aa23.49■■□□□ 1.35
TPM1-201ENST00000267996 BCORL1Q5H9F3 1711 aa23.49■■□□□ 1.35
TPM1-201ENST00000267996 RNF17Q9BXT8 1623 aaKnown RBP23.48■■□□□ 1.35
TPM1-201ENST00000267996 DIP2CQ9Y2E4 1556 aa23.48■■□□□ 1.35
TPM1-201ENST00000267996 PLA2R1Q13018 1463 aa23.48■■□□□ 1.35
TPM1-201ENST00000267996 KANK1Q14678 1352 aa23.45■■□□□ 1.35
TPM1-201ENST00000267996 TET3O43151 1660 aa23.45■■□□□ 1.34
TPM1-201ENST00000267996 E9PCH4 1651 aa23.42■■□□□ 1.34
TPM1-201ENST00000267996 LMTK2Q8IWU2 1503 aa23.41■■□□□ 1.34
TPM1-201ENST00000267996 YEATS2Q9ULM3 1422 aa23.41■■□□□ 1.34
TPM1-201ENST00000267996 CCDC144AA2RUR9 1427 aa23.39■■□□□ 1.33
TPM1-201ENST00000267996 PTPRTO14522 1441 aa23.38■■□□□ 1.33
TPM1-201ENST00000267996 DIEXFQ68CQ4 756 aaKnown RBP23.38■■□□□ 1.33
TPM1-201ENST00000267996 COL17A1Q9UMD9 1497 aaPredicted RBP23.35■■□□□ 1.33
TPM1-201ENST00000267996 EFCAB6Q5THR3 1501 aa23.34■■□□□ 1.33
TPM1-201ENST00000267996 NBPF8Q3BBV2 869 aa23.34■■□□□ 1.33
TPM1-201ENST00000267996 TRPM2O94759 1503 aa23.34■■□□□ 1.33
TPM1-201ENST00000267996 REREQ9P2R6 1566 aa23.34■■□□□ 1.33
TPM1-201ENST00000267996 SPHKAPQ2M3C7 1700 aa23.33■■□□□ 1.32
TPM1-201ENST00000267996 UHRF1BP1Q6BDS2 1440 aa23.32■■□□□ 1.32
TPM1-201ENST00000267996 CEP152O94986 1710 aa23.3■■□□□ 1.32
TPM1-201ENST00000267996 DNAJC5Q9H3Z4 198 aa23.3■■□□□ 1.32
TPM1-201ENST00000267996 ABCC3O15438 1527 aa23.29■■□□□ 1.32
TPM1-201ENST00000267996 GGT6Q6P531 493 aa23.28■■□□□ 1.32
TPM1-201ENST00000267996 AGLP35573 1532 aa23.27■■□□□ 1.32
TPM1-201ENST00000267996 SPATA31E1Q6ZUB1 1445 aa23.25■■□□□ 1.31
TPM1-201ENST00000267996 CLTCL1P53675 1640 aa23.24■■□□□ 1.31
TPM1-201ENST00000267996 ARHGEF40Q8TER5 1519 aa23.24■■□□□ 1.31
TPM1-201ENST00000267996 ZC3H13Q5T200 1668 aaKnown RBP23.23■■□□□ 1.31
TPM1-201ENST00000267996 NPATQ14207 1427 aa23.22■■□□□ 1.31
TPM1-201ENST00000267996 WASHC2CQ9Y4E1 1318 aa23.22■■□□□ 1.31
TPM1-201ENST00000267996 NEURL4Q96JN8 1562 aa23.22■■□□□ 1.31
TPM1-201ENST00000267996 DCAF11Q8TEB1 546 aa23.21■■□□□ 1.31
TPM1-201ENST00000267996 CAMSAP1Q5T5Y3 1602 aa23.2■■□□□ 1.3
TPM1-201ENST00000267996 RALGAPBQ86X10 1494 aa23.2■■□□□ 1.3
TPM1-201ENST00000267996 ARHGAP31Q2M1Z3 1444 aa23.2■■□□□ 1.3
TPM1-201ENST00000267996 EIF4G2P78344 907 aaKnown RBP eCLIP23.18■■□□□ 1.3
TPM1-201ENST00000267996 HSPA5P11021 654 aaKnown RBP23.17■■□□□ 1.3
TPM1-201ENST00000267996 RGL3Q3MIN7 710 aa23.17■■□□□ 1.3
TPM1-201ENST00000267996 PRAG1Q86YV5 1406 aa23.17■■□□□ 1.3
TPM1-201ENST00000267996 PPP6R1Q9UPN7 881 aa23.16■■□□□ 1.3
TPM1-201ENST00000267996 CNTLNQ9NXG0 1405 aa23.16■■□□□ 1.3
TPM1-201ENST00000267996 NOS1P29475 1434 aa23.15■■□□□ 1.3
TPM1-201ENST00000267996 HIRIP3Q9BW71 556 aaPredicted RBP23.15■■□□□ 1.3
TPM1-201ENST00000267996 KDM2AQ9Y2K7 1162 aa23.15■■□□□ 1.3
TPM1-201ENST00000267996 SIGLEC1Q9BZZ2 1709 aa23.15■■□□□ 1.3
TPM1-201ENST00000267996 ZNF326Q5BKZ1 582 aaKnown RBP23.13■■□□□ 1.29
TPM1-201ENST00000267996 STAC3Q96MF2 364 aa23.13■■□□□ 1.29
TPM1-201ENST00000267996 UGGT1Q9NYU2 1555 aa23.12■■□□□ 1.29
TPM1-201ENST00000267996 KIF1BO60333 1816 aa23.1■■□□□ 1.29
TPM1-201ENST00000267996 TRPM1Q7Z4N2 1603 aa23.1■■□□□ 1.29
TPM1-201ENST00000267996 TRHP20396 242 aaPredicted RBP23.09■■□□□ 1.29
TPM1-201ENST00000267996 CFAP65Q6ZU64 1925 aaKnown RBP23.08■■□□□ 1.28
TPM1-201ENST00000267996 PIK3C2BO00750 1634 aa23.06■■□□□ 1.28
TPM1-201ENST00000267996 GPRASP1Q5JY77 1395 aa23.06■■□□□ 1.28
TPM1-201ENST00000267996 SYNMO15061 1565 aa23.06■■□□□ 1.28
TPM1-201ENST00000267996 ADGRB3O60242 1522 aa23.06■■□□□ 1.28
TPM1-201ENST00000267996 USP47Q96K76 1375 aa23.05■■□□□ 1.28
TPM1-201ENST00000267996 MADDQ8WXG6 1647 aa23.04■■□□□ 1.28
TPM1-201ENST00000267996 LAMC1P11047 1609 aa23.03■■□□□ 1.28
TPM1-201ENST00000267996 CARD11Q9BXL7 1154 aa23.03■■□□□ 1.28
TPM1-201ENST00000267996 MROH2AA6NES4 1674 aa23.03■■□□□ 1.28
TPM1-201ENST00000267996 PREX1Q8TCU6 1659 aa23.02■■□□□ 1.28
TPM1-201ENST00000267996 ROCK2O75116 1388 aaKnown RBP23.02■■□□□ 1.28
TPM1-201ENST00000267996 MYOM2P54296 1465 aa23.02■■□□□ 1.28
TPM1-201ENST00000267996 IFT172Q9UG01 1749 aa23.01■■□□□ 1.27
TPM1-201ENST00000267996 MIER1Q8N108 512 aa23.01■■□□□ 1.27
TPM1-201ENST00000267996 DDX10Q13206 875 aaKnown RBP23■■□□□ 1.27
TPM1-201ENST00000267996 CLTCQ00610 1675 aaKnown RBP23■■□□□ 1.27
TPM1-201ENST00000267996 WASHC2AQ641Q2 1341 aa22.99■■□□□ 1.27
TPM1-201ENST00000267996 SLC52A1Q9NWF4 448 aa22.98■■□□□ 1.27
TPM1-201ENST00000267996 ERVK-7P63135 1459 aa22.98■■□□□ 1.27
TPM1-201ENST00000267996 NBPF1Q3BBV0 1214 aa22.97■■□□□ 1.27
TPM1-201ENST00000267996 C11orf95C9JLR9 678 aaPredicted RBP22.96■■□□□ 1.27
TPM1-201ENST00000267996 NRXN1Q9ULB1 1477 aa22.96■■□□□ 1.27
TPM1-201ENST00000267996 POLR1AO95602 1720 aaPredicted RBP22.96■■□□□ 1.27
TPM1-201ENST00000267996 CCDC7Q96M83 1385 aa22.95■■□□□ 1.27
TPM1-201ENST00000267996 KIAA1210Q9ULL0 1709 aa22.95■■□□□ 1.26
TPM1-201ENST00000267996 RPGRIP1LQ68CZ1 1315 aa22.95■■□□□ 1.26
TPM1-201ENST00000267996 IDI1Q13907 227 aa22.93■■□□□ 1.26
TPM1-201ENST00000267996 MLECQ14165 292 aa22.93■■□□□ 1.26
TPM1-201ENST00000267996 SPATA31D1Q6ZQQ2 1576 aa22.93■■□□□ 1.26
TPM1-201ENST00000267996 PPLO60437 1756 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms