RNA–Protein interactions for RNA: ENST00000266679.8

CPSF6-201, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 1 (best) BASIC

Gene CPSF6, Length 2,229 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-201ENST00000266679 ZMYM4Q5VZL5 1548 aa17.96■□□□□ 0.47
CPSF6-201ENST00000266679 SCAPERQ9BY12 1400 aa17.96■□□□□ 0.46
CPSF6-201ENST00000266679 HNRNPMP52272 730 aaKnown RBP eCLIP17.95■□□□□ 0.46
CPSF6-201ENST00000266679 HECW2Q9P2P5 1572 aa17.95■□□□□ 0.46
CPSF6-201ENST00000266679 MADDQ8WXG6 1647 aa17.95■□□□□ 0.46
CPSF6-201ENST00000266679 ARID4BQ4LE39 1312 aaPredicted RBP17.94■□□□□ 0.46
CPSF6-201ENST00000266679 ZFYVE16Q7Z3T8 1539 aa17.94■□□□□ 0.46
CPSF6-201ENST00000266679 KDM5DQ9BY66 1539 aa17.94■□□□□ 0.46
CPSF6-201ENST00000266679 TSPY4P0CV99 314 aa17.94■□□□□ 0.46
CPSF6-201ENST00000266679 TSPY10P0CW01 314 aa17.94■□□□□ 0.46
CPSF6-201ENST00000266679 POGZQ7Z3K3 1410 aa17.94■□□□□ 0.46
CPSF6-201ENST00000266679 NUP155O75694 1391 aa17.94■□□□□ 0.46
CPSF6-201ENST00000266679 KIF15Q9NS87 1388 aa17.94■□□□□ 0.46
CPSF6-201ENST00000266679 SPATA31E1Q6ZUB1 1445 aa17.93■□□□□ 0.46
CPSF6-201ENST00000266679 CCDC141Q6ZP82 1450 aa17.93■□□□□ 0.46
CPSF6-201ENST00000266679 ZNF326Q5BKZ1 582 aaKnown RBP17.91■□□□□ 0.46
CPSF6-201ENST00000266679 RIMS1Q86UR5 1692 aaKnown RBP17.91■□□□□ 0.46
CPSF6-201ENST00000266679 SYCP2Q9BX26 1530 aa17.9■□□□□ 0.46
CPSF6-201ENST00000266679 FKBP8Q14318 412 aa17.9■□□□□ 0.46
CPSF6-201ENST00000266679 EFCAB2Q5VUJ9 269 aa17.9■□□□□ 0.46
CPSF6-201ENST00000266679 BCANQ96GW7 911 aa17.89■□□□□ 0.45
CPSF6-201ENST00000266679 KIF7Q2M1P5 1343 aa17.89■□□□□ 0.45
CPSF6-201ENST00000266679 PTPRMP28827 1452 aa17.88■□□□□ 0.45
CPSF6-201ENST00000266679 KDM5CP41229 1560 aa17.86■□□□□ 0.45
CPSF6-201ENST00000266679 HNRNPUQ00839 825 aaKnown RBP eCLIP17.86■□□□□ 0.45
CPSF6-201ENST00000266679 USP47Q96K76 1375 aa17.85■□□□□ 0.45
CPSF6-201ENST00000266679 ABCC1P33527 1531 aa17.85■□□□□ 0.45
CPSF6-201ENST00000266679 ARHGEF12Q9NZN5 1544 aa17.85■□□□□ 0.45
CPSF6-201ENST00000266679 NEFLP07196 543 aa17.84■□□□□ 0.45
CPSF6-201ENST00000266679 AFAP1Q8N556 730 aa17.84■□□□□ 0.45
CPSF6-201ENST00000266679 MAST1Q9Y2H9 1570 aa17.84■□□□□ 0.45
CPSF6-201ENST00000266679 MLECQ14165 292 aa17.84■□□□□ 0.45
CPSF6-201ENST00000266679 PLPPR3Q6T4P5 718 aa17.84■□□□□ 0.45
CPSF6-201ENST00000266679 ZNF518AQ6AHZ1 1483 aa17.84■□□□□ 0.45
CPSF6-201ENST00000266679 MAGI2Q86UL8 1455 aa17.84■□□□□ 0.45
CPSF6-201ENST00000266679 FAM135AQ9P2D6 1515 aa17.84■□□□□ 0.45
CPSF6-201ENST00000266679 CCDC184Q52MB2 194 aa17.83■□□□□ 0.45
CPSF6-201ENST00000266679 FER1L4A9Z1Z3 1794 aa17.83■□□□□ 0.45
CPSF6-201ENST00000266679 RALGAPBQ86X10 1494 aa17.83■□□□□ 0.44
CPSF6-201ENST00000266679 PRKRIP1Q9H875 184 aaPredicted RBP17.83■□□□□ 0.44
CPSF6-201ENST00000266679 ABCA6Q8N139 1617 aa17.82■□□□□ 0.44
CPSF6-201ENST00000266679 UHRF1BP1Q6BDS2 1440 aa17.82■□□□□ 0.44
CPSF6-201ENST00000266679 TRAPPC8Q9Y2L5 1435 aa17.81■□□□□ 0.44
CPSF6-201ENST00000266679 UNC13BO14795 1591 aa17.81■□□□□ 0.44
CPSF6-201ENST00000266679 DIP2CQ9Y2E4 1556 aa17.8■□□□□ 0.44
CPSF6-201ENST00000266679 MYT1LQ9UL68 1186 aa17.8■□□□□ 0.44
CPSF6-201ENST00000266679 RSPH4AQ5TD94 716 aa17.79■□□□□ 0.44
CPSF6-201ENST00000266679 POLR3GLQ9BT43 218 aa17.79■□□□□ 0.44
CPSF6-201ENST00000266679 PLXNC1O60486 1568 aa17.79■□□□□ 0.44
CPSF6-201ENST00000266679 ATP10AO60312 1499 aa17.79■□□□□ 0.44
CPSF6-201ENST00000266679 MRS2Q9HD23 443 aa17.77■□□□□ 0.44
CPSF6-201ENST00000266679 KDM2AQ9Y2K7 1162 aa17.77■□□□□ 0.44
CPSF6-201ENST00000266679 KIDINS220Q9ULH0 1771 aa17.77■□□□□ 0.43
CPSF6-201ENST00000266679 PLEKHH2Q8IVE3 1493 aa17.76■□□□□ 0.43
CPSF6-201ENST00000266679 IQGAP3Q86VI3 1631 aa17.74■□□□□ 0.43
CPSF6-201ENST00000266679 FAM9BQ8IZU0 186 aa17.74■□□□□ 0.43
CPSF6-201ENST00000266679 CARD11Q9BXL7 1154 aa17.74■□□□□ 0.43
CPSF6-201ENST00000266679 DHX29Q7Z478 1369 aaKnown RBP17.73■□□□□ 0.43
CPSF6-201ENST00000266679 DCAF11Q8TEB1 546 aa17.73■□□□□ 0.43
CPSF6-201ENST00000266679 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.73■□□□□ 0.435e-7■□□□□ 11.3
CPSF6-201ENST00000266679 TSHZ2Q9NRE2 1034 aa17.72■□□□□ 0.43
CPSF6-201ENST00000266679 CNGB1Q14028 1251 aaPredicted RBP17.72■□□□□ 0.43
CPSF6-201ENST00000266679 MLH3Q9UHC1 1453 aa17.72■□□□□ 0.43
CPSF6-201ENST00000266679 CCDC144AA2RUR9 1427 aa17.71■□□□□ 0.43
CPSF6-201ENST00000266679 DUOX2Q9NRD8 1548 aa17.71■□□□□ 0.43
CPSF6-201ENST00000266679 LMTK3Q96Q04 1460 aa17.71■□□□□ 0.43
CPSF6-201ENST00000266679 TRPM1Q7Z4N2 1603 aa17.71■□□□□ 0.42
CPSF6-201ENST00000266679 REREQ9P2R6 1566 aa17.68■□□□□ 0.42
CPSF6-201ENST00000266679 PLA2R1Q13018 1463 aa17.68■□□□□ 0.42
CPSF6-201ENST00000266679 ROCK2O75116 1388 aaKnown RBP17.68■□□□□ 0.42
CPSF6-201ENST00000266679 PRAG1Q86YV5 1406 aa17.66■□□□□ 0.42
CPSF6-201ENST00000266679 CEBPAP49715 358 aaPredicted RBP17.66■□□□□ 0.42
CPSF6-201ENST00000266679 ERBINQ96RT1 1412 aa17.66■□□□□ 0.42
CPSF6-201ENST00000266679 INO80Q9ULG1 1556 aaPredicted RBP17.66■□□□□ 0.42
CPSF6-201ENST00000266679 ST20-MTHFSA0A0A6YYL1 179 aa17.66■□□□□ 0.42
CPSF6-201ENST00000266679 ATP7AQ04656 1500 aa17.65■□□□□ 0.42
CPSF6-201ENST00000266679 E9PCH4 1651 aa17.65■□□□□ 0.42
CPSF6-201ENST00000266679 HSPA2P54652 639 aa17.65■□□□□ 0.42
CPSF6-201ENST00000266679 A2MP01023 1474 aa17.64■□□□□ 0.42
CPSF6-201ENST00000266679 RGL3Q3MIN7 710 aa17.64■□□□□ 0.42
CPSF6-201ENST00000266679 IRX6P78412 446 aaPredicted RBP17.64■□□□□ 0.41
CPSF6-201ENST00000266679 C3P01024 1663 aa17.63■□□□□ 0.41
CPSF6-201ENST00000266679 SPAG9O60271 1321 aaKnown RBP17.63■□□□□ 0.41
CPSF6-201ENST00000266679 ZBED9Q6R2W3 1325 aa17.63■□□□□ 0.41
CPSF6-201ENST00000266679 AGLP35573 1532 aa17.61■□□□□ 0.41
CPSF6-201ENST00000266679 PREX1Q8TCU6 1659 aa17.61■□□□□ 0.41
CPSF6-201ENST00000266679 EIF2AK4Q9P2K8 1649 aaKnown RBP17.59■□□□□ 0.41
CPSF6-201ENST00000266679 LAMC1P11047 1609 aa17.59■□□□□ 0.41
CPSF6-201ENST00000266679 NBPF1Q3BBV0 1214 aa17.57■□□□□ 0.4
CPSF6-201ENST00000266679 ILDR1Q86SU0 546 aaPredicted RBP17.57■□□□□ 0.4
CPSF6-201ENST00000266679 PRDM15P57071 1507 aaPredicted RBP17.56■□□□□ 0.4
CPSF6-201ENST00000266679 CLTCQ00610 1675 aaKnown RBP17.56■□□□□ 0.4
CPSF6-201ENST00000266679 GPRASP1Q5JY77 1395 aa17.55■□□□□ 0.4
CPSF6-201ENST00000266679 RNF17Q9BXT8 1623 aaKnown RBP17.53■□□□□ 0.4
CPSF6-201ENST00000266679 SPHKAPQ2M3C7 1700 aa17.53■□□□□ 0.4
CPSF6-201ENST00000266679 DEPDC5O75140 1603 aa17.52■□□□□ 0.4
CPSF6-201ENST00000266679 RTEL1-TNFRSF6BF6WH68 1400 aa17.52■□□□□ 0.4
CPSF6-201ENST00000266679 ESF1Q9H501 851 aaKnown RBP17.52■□□□□ 0.39
CPSF6-201ENST00000266679 CEP152O94986 1710 aa17.51■□□□□ 0.39
CPSF6-201ENST00000266679 SETD1BQ9UPS6 1966 aaKnown RBP17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms