RNA–Protein interactions for RNA: ENST00000263856.8

CHMP3-201, Transcript of charged multivesicular body protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHMP3, Length 3,171 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-201ENST00000263856 MBD5Q9P267 1494 aa16.45■□□□□ 0.22
CHMP3-201ENST00000263856 C9orf84Q5VXU9 1444 aa16.45■□□□□ 0.22
CHMP3-201ENST00000263856 NLRP13Q86W25 1043 aa16.44■□□□□ 0.22
CHMP3-201ENST00000263856 PDE4AP27815 886 aa16.44■□□□□ 0.22
CHMP3-201ENST00000263856 GRIN2AQ12879 1464 aa16.43■□□□□ 0.22
CHMP3-201ENST00000263856 BRD4O60885 1362 aaPredicted RBP16.43■□□□□ 0.22
CHMP3-201ENST00000263856 NEFMP07197 916 aa16.43■□□□□ 0.22
CHMP3-201ENST00000263856 ARID4BQ4LE39 1312 aaPredicted RBP16.43■□□□□ 0.22
CHMP3-201ENST00000263856 CRBNQ96SW2 442 aa16.41■□□□□ 0.22
CHMP3-201ENST00000263856 RALGAPBQ86X10 1494 aa16.41■□□□□ 0.22
CHMP3-201ENST00000263856 PANK3Q9H999 370 aa16.4■□□□□ 0.22
CHMP3-201ENST00000263856 ADGBQ8N7X0 1667 aa16.4■□□□□ 0.22
CHMP3-201ENST00000263856 ITSN2Q9NZM3 1697 aa16.4■□□□□ 0.22
CHMP3-201ENST00000263856 TCERG1O14776 1098 aaKnown RBP16.39■□□□□ 0.21
CHMP3-201ENST00000263856 CARMIL2Q6F5E8 1435 aa16.38■□□□□ 0.21
CHMP3-201ENST00000263856 IFT140Q96RY7 1462 aa16.38■□□□□ 0.21
CHMP3-201ENST00000263856 SLC4A3P48751 1232 aa16.38■□□□□ 0.21
CHMP3-201ENST00000263856 LRPPRCP42704 1394 aaKnown RBP16.37■□□□□ 0.21
CHMP3-201ENST00000263856 CCDC144AA2RUR9 1427 aa16.37■□□□□ 0.21
CHMP3-201ENST00000263856 C20orf194Q5TEA3 1177 aa16.36■□□□□ 0.21
CHMP3-201ENST00000263856 ERCC6Q03468 1493 aa16.35■□□□□ 0.21
CHMP3-201ENST00000263856 DAXXQ9UER7 740 aaPredicted RBP16.34■□□□□ 0.21
CHMP3-201ENST00000263856 ADGRL2O95490 1459 aa16.34■□□□□ 0.21
CHMP3-201ENST00000263856 BACH2Q9BYV9 841 aa16.33■□□□□ 0.21
CHMP3-201ENST00000263856 UHRF1BP1Q6BDS2 1440 aa16.33■□□□□ 0.2
CHMP3-201ENST00000263856 EIF4G3O43432 1585 aaKnown RBP16.33■□□□□ 0.2
CHMP3-201ENST00000263856 WDR43Q15061 677 aaKnown RBP eCLIP16.33■□□□□ 0.2
CHMP3-201ENST00000263856 DISP3Q9P2K9 1392 aa16.32■□□□□ 0.2
CHMP3-201ENST00000263856 RGS3P49796 1198 aa16.32■□□□□ 0.2
CHMP3-201ENST00000263856 IL27Q8NEV9 243 aa16.32■□□□□ 0.2
CHMP3-201ENST00000263856 ADAMTS8Q9UP79 889 aa16.31■□□□□ 0.2
CHMP3-201ENST00000263856 TMF1P82094 1093 aa16.31■□□□□ 0.2
CHMP3-201ENST00000263856 PDE3BQ13370 1112 aa16.31■□□□□ 0.2
CHMP3-201ENST00000263856 MAGI1Q96QZ7 1491 aaPredicted RBP16.3■□□□□ 0.2
CHMP3-201ENST00000263856 CROCC2H7BZ55 1655 aa16.3■□□□□ 0.2
CHMP3-201ENST00000263856 CCDC146Q8IYE0 955 aa16.3■□□□□ 0.2
CHMP3-201ENST00000263856 CEP170Q5SW79 1584 aa16.3■□□□□ 0.2
CHMP3-201ENST00000263856 PER1O15534 1290 aaPredicted RBP16.29■□□□□ 0.2
CHMP3-201ENST00000263856 PARD3Q8TEW0 1356 aa16.29■□□□□ 0.2
CHMP3-201ENST00000263856 KNSTRNQ9Y448 316 aa16.28■□□□□ 0.2
CHMP3-201ENST00000263856 ATP10BO94823 1461 aa16.28■□□□□ 0.2
CHMP3-201ENST00000263856 CDC42BPAQ5VT25 1732 aa16.28■□□□□ 0.2
CHMP3-201ENST00000263856 ARHGEF12Q9NZN5 1544 aa16.26■□□□□ 0.19
CHMP3-201ENST00000263856 PRAG1Q86YV5 1406 aa16.26■□□□□ 0.19
CHMP3-201ENST00000263856 FAM135AQ9P2D6 1515 aa16.25■□□□□ 0.19
CHMP3-201ENST00000263856 TESK2Q96S53 571 aa16.24■□□□□ 0.19
CHMP3-201ENST00000263856 SYNJ2O15056 1496 aa16.23■□□□□ 0.19
CHMP3-201ENST00000263856 MS4A1P11836 297 aa16.23■□□□□ 0.19
CHMP3-201ENST00000263856 ERBINQ96RT1 1412 aa16.23■□□□□ 0.19
CHMP3-201ENST00000263856 PPM1GO15355 546 aaPredicted RBP16.21■□□□□ 0.19
CHMP3-201ENST00000263856 ABCC10Q5T3U5 1492 aa16.21■□□□□ 0.19
CHMP3-201ENST00000263856 PTPRGP23470 1445 aa16.21■□□□□ 0.19
CHMP3-201ENST00000263856 CCDC141Q6ZP82 1450 aa16.2■□□□□ 0.18
CHMP3-201ENST00000263856 KDM5DQ9BY66 1539 aa16.2■□□□□ 0.18
CHMP3-201ENST00000263856 DDRGK1Q96HY6 314 aa16.2■□□□□ 0.18
CHMP3-201ENST00000263856 ADCY10Q96PN6 1610 aa16.2■□□□□ 0.18
CHMP3-201ENST00000263856 A2MP01023 1474 aa16.2■□□□□ 0.18
CHMP3-201ENST00000263856 PPP2R1AP30153 589 aa16.19■□□□□ 0.18
CHMP3-201ENST00000263856 NEUROD2Q15784 382 aa16.19■□□□□ 0.18
CHMP3-201ENST00000263856 SHANK2Q9UPX8 1470 aa16.19■□□□□ 0.18
CHMP3-201ENST00000263856 CANXP27824 592 aaKnown RBP16.18■□□□□ 0.18
CHMP3-201ENST00000263856 GOLGA2Q08379 1002 aa16.18■□□□□ 0.18
CHMP3-201ENST00000263856 ANO8Q9HCE9 1232 aaPredicted RBP16.18■□□□□ 0.18
CHMP3-201ENST00000263856 ARHGAP5Q13017 1502 aa16.18■□□□□ 0.18
CHMP3-201ENST00000263856 PLEKHH2Q8IVE3 1493 aa16.18■□□□□ 0.18
CHMP3-201ENST00000263856 TNNT2P45379 298 aaPredicted RBP16.18■□□□□ 0.18
CHMP3-201ENST00000263856 SYCP2Q9BX26 1530 aa16.17■□□□□ 0.18
CHMP3-201ENST00000263856 COL17A1Q9UMD9 1497 aaPredicted RBP16.17■□□□□ 0.18
CHMP3-201ENST00000263856 PLEKHH1Q9ULM0 1364 aa16.17■□□□□ 0.18
CHMP3-201ENST00000263856 E9PCH4 1651 aa16.17■□□□□ 0.18
CHMP3-201ENST00000263856 TRPM1Q7Z4N2 1603 aa16.16■□□□□ 0.18
CHMP3-201ENST00000263856 APAF1O14727 1248 aa16.16■□□□□ 0.18
CHMP3-201ENST00000263856 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.16■□□□□ 0.18
CHMP3-201ENST00000263856 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.16■□□□□ 0.18
CHMP3-201ENST00000263856 BCAR3O75815 825 aa16.15■□□□□ 0.18
CHMP3-201ENST00000263856 NFKBIBQ15653 356 aa16.15■□□□□ 0.18
CHMP3-201ENST00000263856 DUSP27Q5VZP5 1158 aa16.15■□□□□ 0.18
CHMP3-201ENST00000263856 PLA2R1Q13018 1463 aa16.14■□□□□ 0.17
CHMP3-201ENST00000263856 SAMD9LQ8IVG5 1584 aa16.14■□□□□ 0.17
CHMP3-201ENST00000263856 CENPQQ7L2Z9 268 aaPredicted RBP16.14■□□□□ 0.17
CHMP3-201ENST00000263856 SENP3Q9H4L4 574 aaPredicted RBP16.14■□□□□ 0.17
CHMP3-201ENST00000263856 BRPF3Q9ULD4 1205 aa16.14■□□□□ 0.17
CHMP3-201ENST00000263856 ABCA8O94911 1581 aa16.13■□□□□ 0.17
CHMP3-201ENST00000263856 FRAT1Q92837 279 aaPredicted RBP16.12■□□□□ 0.17
CHMP3-201ENST00000263856 BLMP54132 1417 aaPredicted RBP16.12■□□□□ 0.17
CHMP3-201ENST00000263856 FAM161AQ3B820 660 aa16.12■□□□□ 0.17
CHMP3-201ENST00000263856 RSPH4AQ5TD94 716 aa16.12■□□□□ 0.17
CHMP3-201ENST00000263856 SPINK5Q9NQ38 1064 aaPredicted RBP16.12■□□□□ 0.17
CHMP3-201ENST00000263856 USP35Q9P2H5 1018 aa16.11■□□□□ 0.17
CHMP3-201ENST00000263856 WASHC2CQ9Y4E1 1318 aa16.11■□□□□ 0.17
CHMP3-201ENST00000263856 CHGAP10645 457 aaKnown RBP16.1■□□□□ 0.17
CHMP3-201ENST00000263856 NUP160Q12769 1436 aa16.1■□□□□ 0.17
CHMP3-201ENST00000263856 ARXQ96QS3 562 aa16.1■□□□□ 0.17
CHMP3-201ENST00000263856 RRP7AQ9Y3A4 280 aaKnown RBP16.09■□□□□ 0.17
CHMP3-201ENST00000263856 ZMYM4Q5VZL5 1548 aa16.09■□□□□ 0.17
CHMP3-201ENST00000263856 MAGI2Q86UL8 1455 aa16.09■□□□□ 0.17
CHMP3-201ENST00000263856 GSE1Q14687 1217 aa16.08■□□□□ 0.16
CHMP3-201ENST00000263856 CDC42BPBQ9Y5S2 1711 aa16.08■□□□□ 0.16
CHMP3-201ENST00000263856 GPRASP1Q5JY77 1395 aa16.08■□□□□ 0.16
CHMP3-201ENST00000263856 AMER1Q5JTC6 1135 aaPredicted RBP16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms