RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 KTN1Q86UP2 1357 aaKnown RBP9.42□□□□□ -0.9
CSDE1-201ENST00000261443 HSP90AA2PQ14568 343 aaPredicted RBP9.42□□□□□ -0.9
CSDE1-201ENST00000261443 NUP153P49790 1475 aaKnown RBP9.42□□□□□ -0.9
CSDE1-201ENST00000261443 RALBP1Q15311 655 aa9.42□□□□□ -0.9
CSDE1-201ENST00000261443 CENPQQ7L2Z9 268 aaPredicted RBP9.41□□□□□ -0.9
CSDE1-201ENST00000261443 CEP170Q5SW79 1584 aa9.41□□□□□ -0.9
CSDE1-201ENST00000261443 SLC4A1APQ9BWU0 796 aaKnown RBP9.41□□□□□ -0.9
CSDE1-201ENST00000261443 HSP90AA1P07900 732 aaKnown RBP9.41□□□□□ -0.9
CSDE1-201ENST00000261443 KDM2BQ8NHM5 1336 aa9.4□□□□□ -0.9
CSDE1-201ENST00000261443 PNNQ9H307 717 aaKnown RBP9.4□□□□□ -0.9
CSDE1-201ENST00000261443 IFT140Q96RY7 1462 aa9.4□□□□□ -0.9
CSDE1-201ENST00000261443 RRP9O43818 475 aaKnown RBP9.4□□□□□ -0.91
CSDE1-201ENST00000261443 C20orf194Q5TEA3 1177 aa9.39□□□□□ -0.91
CSDE1-201ENST00000261443 GRIN2AQ12879 1464 aa9.38□□□□□ -0.91
CSDE1-201ENST00000261443 RGS3P49796 1198 aa9.38□□□□□ -0.91
CSDE1-201ENST00000261443 NLRP13Q86W25 1043 aa9.38□□□□□ -0.91
CSDE1-201ENST00000261443 DNAJC5Q9H3Z4 198 aa9.38□□□□□ -0.91
CSDE1-201ENST00000261443 DNMT1P26358 1616 aaKnown RBP9.37□□□□□ -0.91
CSDE1-201ENST00000261443 RAPGEF6Q8TEU7 1601 aa9.37□□□□□ -0.91
CSDE1-201ENST00000261443 KIAA0586Q9BVV6 1533 aa9.37□□□□□ -0.91
CSDE1-201ENST00000261443 KDM5CP41229 1560 aa9.37□□□□□ -0.91
CSDE1-201ENST00000261443 ARXQ96QS3 562 aa9.37□□□□□ -0.91
CSDE1-201ENST00000261443 KIF14Q15058 1648 aa9.36□□□□□ -0.91
CSDE1-201ENST00000261443 CLCN1P35523 988 aa9.36□□□□□ -0.91
CSDE1-201ENST00000261443 MBD5Q9P267 1494 aa9.35□□□□□ -0.91
CSDE1-201ENST00000261443 SLKQ9H2G2 1235 aaPredicted RBP9.35□□□□□ -0.91
CSDE1-201ENST00000261443 ABCC5O15440 1437 aa9.35□□□□□ -0.91
CSDE1-201ENST00000261443 BECN1Q14457 450 aa9.35□□□□□ -0.91
CSDE1-201ENST00000261443 CARD11Q9BXL7 1154 aa9.35□□□□□ -0.91
CSDE1-201ENST00000261443 ZNF644Q9H582 1327 aaPredicted RBP9.34□□□□□ -0.91
CSDE1-201ENST00000261443 GOLGA6L3A6NEY3 463 aa9.34□□□□□ -0.91
CSDE1-201ENST00000261443 ARID3CA6NKF2 412 aa9.34□□□□□ -0.91
CSDE1-201ENST00000261443 XRCC6P12956 609 aaKnown RBP eCLIP9.34□□□□□ -0.91
CSDE1-201ENST00000261443 ADCY10Q96PN6 1610 aa9.34□□□□□ -0.91
CSDE1-201ENST00000261443 DAPK1P53355 1430 aa9.34□□□□□ -0.92
CSDE1-201ENST00000261443 CROCC2H7BZ55 1655 aa9.33□□□□□ -0.92
CSDE1-201ENST00000261443 PLB1Q6P1J6 1458 aa9.33□□□□□ -0.92
CSDE1-201ENST00000261443 ST20-MTHFSA0A0A6YYL1 179 aa9.33□□□□□ -0.92
CSDE1-201ENST00000261443 ROCK1Q13464 1354 aa9.32□□□□□ -0.92
CSDE1-201ENST00000261443 PARD3Q8TEW0 1356 aa9.32□□□□□ -0.92
CSDE1-201ENST00000261443 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.31□□□□□ -0.92
CSDE1-201ENST00000261443 PRG4Q92954 1404 aaPredicted RBP9.31□□□□□ -0.92
CSDE1-201ENST00000261443 PANK2Q9BZ23 570 aa9.31□□□□□ -0.92
CSDE1-201ENST00000261443 USP19O94966 1318 aa9.31□□□□□ -0.92
CSDE1-201ENST00000261443 NUP160Q12769 1436 aa9.3□□□□□ -0.92
CSDE1-201ENST00000261443 PZPP20742 1482 aa9.3□□□□□ -0.92
CSDE1-201ENST00000261443 GZF1Q9H116 711 aaPredicted RBP9.3□□□□□ -0.92
CSDE1-201ENST00000261443 CDC42BPAQ5VT25 1732 aa9.3□□□□□ -0.92
CSDE1-201ENST00000261443 BLMP54132 1417 aaPredicted RBP9.3□□□□□ -0.92
CSDE1-201ENST00000261443 E9PCH4 1651 aa9.3□□□□□ -0.92
CSDE1-201ENST00000261443 RALGAPBQ86X10 1494 aa9.3□□□□□ -0.92
CSDE1-201ENST00000261443 PLEKHH2Q8IVE3 1493 aa9.3□□□□□ -0.92
CSDE1-201ENST00000261443 MAGI1Q96QZ7 1491 aaPredicted RBP9.3□□□□□ -0.92
CSDE1-201ENST00000261443 FSD2A1L4K1 749 aa9.29□□□□□ -0.92
CSDE1-201ENST00000261443 PODXL2Q9NZ53 605 aa9.29□□□□□ -0.92
CSDE1-201ENST00000261443 SYNJ2O15056 1496 aa9.29□□□□□ -0.92
CSDE1-201ENST00000261443 ZMYM4Q5VZL5 1548 aa9.29□□□□□ -0.92
CSDE1-201ENST00000261443 GPATCH8Q9UKJ3 1502 aaKnown RBP9.29□□□□□ -0.92
CSDE1-201ENST00000261443 ANTXR1Q9H6X2 564 aa9.29□□□□□ -0.92
CSDE1-201ENST00000261443 VIRMAQ69YN4 1812 aaKnown RBP9.29□□□□□ -0.92
CSDE1-201ENST00000261443 INSRP06213 1382 aa9.28□□□□□ -0.92
CSDE1-201ENST00000261443 KIAA1107Q9UPP5 1409 aa9.28□□□□□ -0.92
CSDE1-201ENST00000261443 ABCA8O94911 1581 aa9.28□□□□□ -0.92
CSDE1-201ENST00000261443 ADGBQ8N7X0 1667 aa9.28□□□□□ -0.92
CSDE1-201ENST00000261443 SEC24BO95487 1268 aa9.28□□□□□ -0.92
CSDE1-201ENST00000261443 CC2D1BQ5T0F9 858 aaKnown RBP9.28□□□□□ -0.92
CSDE1-201ENST00000261443 CAMSAP2Q08AD1 1489 aa9.28□□□□□ -0.92
CSDE1-201ENST00000261443 PKD2Q13563 968 aa9.27□□□□□ -0.92
CSDE1-201ENST00000261443 UHRF1BP1Q6BDS2 1440 aa9.27□□□□□ -0.92
CSDE1-201ENST00000261443 KDM2AQ9Y2K7 1162 aa9.27□□□□□ -0.92
CSDE1-201ENST00000261443 DUSP27Q5VZP5 1158 aa9.27□□□□□ -0.93
CSDE1-201ENST00000261443 ABCC10Q5T3U5 1492 aa9.26□□□□□ -0.93
CSDE1-201ENST00000261443 ESPNB1AK53 854 aa9.26□□□□□ -0.93
CSDE1-201ENST00000261443 MRE11P49959 708 aa9.26□□□□□ -0.93
CSDE1-201ENST00000261443 TROQ12816 1431 aaPredicted RBP9.26□□□□□ -0.93
CSDE1-201ENST00000261443 MYH16Q9H6N6 1097 aa9.26□□□□□ -0.93
CSDE1-201ENST00000261443 MCM4P33991 863 aa9.26□□□□□ -0.93
CSDE1-201ENST00000261443 ITSN2Q9NZM3 1697 aa9.25□□□□□ -0.93
CSDE1-201ENST00000261443 PER1O15534 1290 aaPredicted RBP9.25□□□□□ -0.93
CSDE1-201ENST00000261443 UPF2Q9HAU5 1272 aaKnown RBP9.25□□□□□ -0.93
CSDE1-201ENST00000261443 ADGRL2O95490 1459 aa9.25□□□□□ -0.93
CSDE1-201ENST00000261443 ADAMTS8Q9UP79 889 aa9.25□□□□□ -0.93
CSDE1-201ENST00000261443 MAPK8IP3Q9UPT6 1336 aa9.24□□□□□ -0.93
CSDE1-201ENST00000261443 PDCL3Q9H2J4 239 aa9.24□□□□□ -0.93
CSDE1-201ENST00000261443 TRAK2O60296 914 aa9.24□□□□□ -0.93
CSDE1-201ENST00000261443 IGHDP01880 384 aa9.24□□□□□ -0.93
CSDE1-201ENST00000261443 TPM2P07951 284 aa9.24□□□□□ -0.93
CSDE1-201ENST00000261443 GOLGA2Q08379 1002 aa9.24□□□□□ -0.93
CSDE1-201ENST00000261443 SPRYD3Q8NCJ5 442 aa9.24□□□□□ -0.93
CSDE1-201ENST00000261443 TRIM44Q96DX7 344 aaPredicted RBP9.24□□□□□ -0.93
CSDE1-201ENST00000261443 TBC1D2Q9BYX2 928 aa9.24□□□□□ -0.93
CSDE1-201ENST00000261443 EIF3AQ14152 1382 aaKnown RBP9.23□□□□□ -0.93
CSDE1-201ENST00000261443 GRPEL1Q9HAV7 217 aa9.23□□□□□ -0.93
CSDE1-201ENST00000261443 PLEKHG5O94827 1062 aa9.23□□□□□ -0.93
CSDE1-201ENST00000261443 PLEKHH1Q9ULM0 1364 aa9.23□□□□□ -0.93
CSDE1-201ENST00000261443 ERBB4Q15303 1308 aa9.23□□□□□ -0.93
CSDE1-201ENST00000261443 ATP10BO94823 1461 aa9.22□□□□□ -0.93
CSDE1-201ENST00000261443 NLRP1Q9C000 1473 aa9.22□□□□□ -0.93
CSDE1-201ENST00000261443 WDR43Q15061 677 aaKnown RBP eCLIP9.22□□□□□ -0.93
CSDE1-201ENST00000261443 CENPJQ9HC77 1338 aaPredicted RBP9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms