RNA–Protein interactions for RNA: ENST00000241393.3

CXCR4-201, Transcript of C-X-C motif chemokine receptor 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CXCR4, Length 1,682 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCR4-201ENST00000241393 PTGDRQ13258 359 aa12.64□□□□□ -0.39
CXCR4-201ENST00000241393 PCDHGA10Q9Y5H3 936 aa12.64□□□□□ -0.39
CXCR4-201ENST00000241393 BAZ1AQ9NRL2 1556 aaPredicted RBP12.63□□□□□ -0.39
CXCR4-201ENST00000241393 HOXB3P14651 431 aaPredicted RBP12.63□□□□□ -0.39
CXCR4-201ENST00000241393 POTEB2H3BUK9 544 aa12.62□□□□□ -0.39
CXCR4-201ENST00000241393 FOSBP53539 338 aa12.62□□□□□ -0.39
CXCR4-201ENST00000241393 ARSIQ5FYB1 569 aa12.62□□□□□ -0.39
CXCR4-201ENST00000241393 ZNF454Q8N9F8 522 aa12.62□□□□□ -0.39
CXCR4-201ENST00000241393 ZDHHC16Q969W1 377 aa12.62□□□□□ -0.39
CXCR4-201ENST00000241393 RBM33Q96EV2 1170 aaKnown RBP12.62□□□□□ -0.39
CXCR4-201ENST00000241393 IRF6O14896 467 aa12.61□□□□□ -0.39
CXCR4-201ENST00000241393 KDM4FA0A1W2PPD8 638 aa12.61□□□□□ -0.39
CXCR4-201ENST00000241393 TRIM66O15016 1216 aa12.61□□□□□ -0.39
CXCR4-201ENST00000241393 NUDT7P0C024 238 aa12.61□□□□□ -0.39
CXCR4-201ENST00000241393 PPP4R3BQ5MIZ7 849 aa12.58□□□□□ -0.4
CXCR4-201ENST00000241393 CCDC102AQ96A19 550 aa12.58□□□□□ -0.4
CXCR4-201ENST00000241393 PDE4DQ08499 809 aa12.57□□□□□ -0.4
CXCR4-201ENST00000241393 GPR153Q6NV75 609 aa12.57□□□□□ -0.4
CXCR4-201ENST00000241393 ERICH6Q7L0X2 663 aa12.57□□□□□ -0.4
CXCR4-201ENST00000241393 WIZO95785 1651 aa12.56□□□□□ -0.4
CXCR4-201ENST00000241393 PRIM1P49642 420 aaKnown RBP12.56□□□□□ -0.4
CXCR4-201ENST00000241393 HRCP23327 699 aa12.54□□□□□ -0.4
CXCR4-201ENST00000241393 LOC105371045A0A1W2PR82 267 aa12.54□□□□□ -0.4
CXCR4-201ENST00000241393 C6orf132Q5T0Z8 1188 aa12.54□□□□□ -0.4
CXCR4-201ENST00000241393 AMHR2Q16671 573 aa12.53□□□□□ -0.4
CXCR4-201ENST00000241393 KCNH8Q96L42 1107 aa12.52□□□□□ -0.4
CXCR4-201ENST00000241393 CDHR5Q9HBB8 845 aa12.52□□□□□ -0.4
CXCR4-201ENST00000241393 RBM27Q9P2N5 1060 aaKnown RBP12.52□□□□□ -0.4
CXCR4-201ENST00000241393 HOXB1P14653 301 aaPredicted RBP12.51□□□□□ -0.41
CXCR4-201ENST00000241393 TSR1Q2NL82 804 aaKnown RBP12.51□□□□□ -0.41
CXCR4-201ENST00000241393 KHSRPQ92945 711 aaKnown RBP eCLIP12.51□□□□□ -0.41
CXCR4-201ENST00000241393 KDM4CQ9H3R0 1056 aa12.51□□□□□ -0.41
CXCR4-201ENST00000241393 OATP04181 439 aa12.5□□□□□ -0.41
CXCR4-201ENST00000241393 NPDC1Q9NQX5 325 aaPredicted RBP12.5□□□□□ -0.41
CXCR4-201ENST00000241393 LHX6Q9UPM6 363 aa12.5□□□□□ -0.41
CXCR4-201ENST00000241393 SMARCA4P51532 1647 aa12.49□□□□□ -0.41
CXCR4-201ENST00000241393 TOP2AP11388 1531 aaKnown RBP12.49□□□□□ -0.41
CXCR4-201ENST00000241393 GTF3C3Q9Y5Q9 886 aa12.49□□□□□ -0.41
CXCR4-201ENST00000241393 UNC13AQ9UPW8 1703 aa12.48□□□□□ -0.41
CXCR4-201ENST00000241393 FECHP22830 423 aa12.48□□□□□ -0.41
CXCR4-201ENST00000241393 TTLL12Q14166 644 aaPredicted RBP12.48□□□□□ -0.41
CXCR4-201ENST00000241393 EIF4G1Q04637 1599 aaKnown RBP12.48□□□□□ -0.41
CXCR4-201ENST00000241393 PCGF6Q9BYE7 350 aa12.47□□□□□ -0.41
CXCR4-201ENST00000241393 ADAM33Q9BZ11 813 aa12.47□□□□□ -0.41
CXCR4-201ENST00000241393 PTPREP23469 700 aa12.46□□□□□ -0.41
CXCR4-201ENST00000241393 DDRGK1Q96HY6 314 aa12.46□□□□□ -0.41
CXCR4-201ENST00000241393 BCL2L12Q9HB09 334 aa12.46□□□□□ -0.41
CXCR4-201ENST00000241393 GPBP1L1Q9HC44 474 aaPredicted RBP12.46□□□□□ -0.41
CXCR4-201ENST00000241393 CLCN1P35523 988 aa12.45□□□□□ -0.42
CXCR4-201ENST00000241393 LHX8Q68G74 356 aa12.45□□□□□ -0.42
CXCR4-201ENST00000241393 PRSS12P56730 875 aa12.43□□□□□ -0.42
CXCR4-201ENST00000241393 PPP1R3GB7ZBB8 358 aa12.42□□□□□ -0.42
CXCR4-201ENST00000241393 PADI6Q6TGC4 694 aa12.42□□□□□ -0.42
CXCR4-201ENST00000241393 RBM46Q8TBY0 533 aaKnown RBP12.42□□□□□ -0.42
CXCR4-201ENST00000241393 OTUD5Q96G74 571 aa12.42□□□□□ -0.42
CXCR4-201ENST00000241393 TRIM26Q12899 539 aaPredicted RBP12.41□□□□□ -0.42
CXCR4-201ENST00000241393 PARP9Q8IXQ6 854 aa12.41□□□□□ -0.42
CXCR4-201ENST00000241393 CDCA7LQ96GN5 454 aa12.39□□□□□ -0.43
CXCR4-201ENST00000241393 IL27Q8NEV9 243 aa12.38□□□□□ -0.43
CXCR4-201ENST00000241393 GPCPD1Q9NPB8 672 aa12.38□□□□□ -0.43
CXCR4-201ENST00000241393 SMARCA2P51531 1590 aa12.37□□□□□ -0.43
CXCR4-201ENST00000241393 BICRAQ9NZM4 1560 aa12.37□□□□□ -0.43
CXCR4-201ENST00000241393 TTC13Q8NBP0 860 aa12.37□□□□□ -0.43
CXCR4-201ENST00000241393 ADGRG1Q9Y653 693 aa12.37□□□□□ -0.43
CXCR4-201ENST00000241393 METTL3Q86U44 580 aaKnown RBP12.36□□□□□ -0.43
CXCR4-201ENST00000241393 PACS2Q86VP3 889 aa12.36□□□□□ -0.43
CXCR4-201ENST00000241393 PEG3Q9GZU2 1588 aa12.36□□□□□ -0.43
CXCR4-201ENST00000241393 NBPF26B4DH59 902 aa12.35□□□□□ -0.43
CXCR4-201ENST00000241393 GIGYF2Q6Y7W6 1299 aaKnown RBP12.35□□□□□ -0.43
CXCR4-201ENST00000241393 CCDC88BA6NC98 1476 aa12.35□□□□□ -0.43
CXCR4-201ENST00000241393 ERBB3P21860 1342 aa12.34□□□□□ -0.43
CXCR4-201ENST00000241393 ONECUT3O60422 494 aaPredicted RBP12.34□□□□□ -0.43
CXCR4-201ENST00000241393 MDM2Q00987 491 aaPredicted RBP12.34□□□□□ -0.43
CXCR4-201ENST00000241393 PXYLP1Q8TE99 480 aa12.34□□□□□ -0.43
CXCR4-201ENST00000241393 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.32□□□□□ -0.44
CXCR4-201ENST00000241393 KCNK17Q96T54 332 aa12.31□□□□□ -0.44
CXCR4-201ENST00000241393 FAM117AQ9C073 453 aa12.31□□□□□ -0.44
CXCR4-201ENST00000241393 COL9A1P20849 921 aa12.3□□□□□ -0.44
CXCR4-201ENST00000241393 TRIM6-TRIM34B2RNG4 842 aa12.29□□□□□ -0.44
CXCR4-201ENST00000241393 PBX2P40425 430 aa12.29□□□□□ -0.44
CXCR4-201ENST00000241393 RSPH6AQ9H0K4 717 aa12.29□□□□□ -0.44
CXCR4-201ENST00000241393 EMP3P54852 163 aa12.28□□□□□ -0.44
CXCR4-201ENST00000241393 FAM9AQ8IZU1 332 aaPredicted RBP12.28□□□□□ -0.44
CXCR4-201ENST00000241393 GOPCQ9HD26 462 aa12.28□□□□□ -0.44
CXCR4-201ENST00000241393 SSTR3P32745 418 aaPredicted RBP12.27□□□□□ -0.45
CXCR4-201ENST00000241393 TMUB1Q9BVT8 246 aa12.27□□□□□ -0.45
CXCR4-201ENST00000241393 ARHGAP33O14559 1287 aa12.26□□□□□ -0.45
CXCR4-201ENST00000241393 DIXDC1Q155Q3 683 aa12.26□□□□□ -0.45
CXCR4-201ENST00000241393 FAM161AQ3B820 660 aa12.26□□□□□ -0.45
CXCR4-201ENST00000241393 SULF1Q8IWU6 871 aa12.26□□□□□ -0.45
CXCR4-201ENST00000241393 EEA1Q15075 1411 aa12.25□□□□□ -0.45
CXCR4-201ENST00000241393 DNAJB2P25686 324 aa12.25□□□□□ -0.45
CXCR4-201ENST00000241393 VARS2Q5ST30 1063 aaKnown RBP12.25□□□□□ -0.45
CXCR4-201ENST00000241393 PNMA3Q9UL41 463 aa12.25□□□□□ -0.45
CXCR4-201ENST00000241393 TATDN2Q93075 761 aa12.24□□□□□ -0.45
CXCR4-201ENST00000241393 PHOX2BQ99453 314 aa12.24□□□□□ -0.45
CXCR4-201ENST00000241393 FAM217BQ9NTX9 383 aaPredicted RBP12.24□□□□□ -0.45
CXCR4-201ENST00000241393 TSKSQ9UJT2 592 aa12.24□□□□□ -0.45
CXCR4-201ENST00000241393 SLC4A3P48751 1232 aa12.23□□□□□ -0.45
CXCR4-201ENST00000241393 RSPH4AQ5TD94 716 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms