RNA–Protein interactions for RNA: ENST00000237186.10

UBE3D-201, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,879 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-201ENST00000237186 DCAF11Q8TEB1 546 aa22.32■■□□□ 1.16
UBE3D-201ENST00000237186 CARD11Q9BXL7 1154 aa22.32■■□□□ 1.16
UBE3D-201ENST00000237186 IQGAP3Q86VI3 1631 aa22.32■■□□□ 1.16
UBE3D-201ENST00000237186 RTEL1-TNFRSF6BF6WH68 1400 aa22.31■■□□□ 1.16
UBE3D-201ENST00000237186 ROCK2O75116 1388 aaKnown RBP22.31■■□□□ 1.16
UBE3D-201ENST00000237186 DHX29Q7Z478 1369 aaKnown RBP22.3■■□□□ 1.16
UBE3D-201ENST00000237186 TRAPPC8Q9Y2L5 1435 aa22.29■■□□□ 1.16
UBE3D-201ENST00000237186 BCORL1Q5H9F3 1711 aa22.29■■□□□ 1.16
UBE3D-201ENST00000237186 HNRNPUQ00839 825 aaKnown RBP eCLIP22.29■■□□□ 1.16
UBE3D-201ENST00000237186 ASXL2Q76L83 1435 aa22.29■■□□□ 1.16
UBE3D-201ENST00000237186 NPM1P06748 294 aaKnown RBP eCLIP22.28■■□□□ 1.16
UBE3D-201ENST00000237186 CCDC184Q52MB2 194 aa22.28■■□□□ 1.16
UBE3D-201ENST00000237186 KDM2AQ9Y2K7 1162 aa22.27■■□□□ 1.16
UBE3D-201ENST00000237186 PRAG1Q86YV5 1406 aa22.27■■□□□ 1.16
UBE3D-201ENST00000237186 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.26■■□□□ 1.15
UBE3D-201ENST00000237186 FKBP8Q14318 412 aa22.25■■□□□ 1.15
UBE3D-201ENST00000237186 GPRASP1Q5JY77 1395 aa22.23■■□□□ 1.15
UBE3D-201ENST00000237186 MRS2Q9HD23 443 aa22.23■■□□□ 1.15
UBE3D-201ENST00000237186 NEFLP07196 543 aa22.22■■□□□ 1.15
UBE3D-201ENST00000237186 SPAG9O60271 1321 aaKnown RBP22.22■■□□□ 1.15
UBE3D-201ENST00000237186 ABCA9Q8IUA7 1624 aa22.22■■□□□ 1.15
UBE3D-201ENST00000237186 ST20-MTHFSA0A0A6YYL1 179 aa22.22■■□□□ 1.15
UBE3D-201ENST00000237186 A2MP01023 1474 aa22.21■■□□□ 1.15
UBE3D-201ENST00000237186 AFAP1Q8N556 730 aa22.17■■□□□ 1.14
UBE3D-201ENST00000237186 ZFYVE16Q7Z3T8 1539 aa22.17■■□□□ 1.14
UBE3D-201ENST00000237186 TRPM1Q7Z4N2 1603 aa22.17■■□□□ 1.14
UBE3D-201ENST00000237186 ZBED9Q6R2W3 1325 aa22.15■■□□□ 1.14
UBE3D-201ENST00000237186 FANCAO15360 1455 aa22.15■■□□□ 1.14
UBE3D-201ENST00000237186 RGL3Q3MIN7 710 aa22.15■■□□□ 1.14
UBE3D-201ENST00000237186 FAM9BQ8IZU0 186 aa22.14■■□□□ 1.13
UBE3D-201ENST00000237186 KTN1Q86UP2 1357 aaKnown RBP22.13■■□□□ 1.13
UBE3D-201ENST00000237186 LAMC1P11047 1609 aa22.13■■□□□ 1.13
UBE3D-201ENST00000237186 PTPRTO14522 1441 aa22.12■■□□□ 1.13
UBE3D-201ENST00000237186 NBPF1Q3BBV0 1214 aa22.11■■□□□ 1.13
UBE3D-201ENST00000237186 STAC3Q96MF2 364 aa22.11■■□□□ 1.13
UBE3D-201ENST00000237186 POLR3GLQ9BT43 218 aa22.11■■□□□ 1.13
UBE3D-201ENST00000237186 EIF2AK4Q9P2K8 1649 aaKnown RBP22.09■■□□□ 1.13
UBE3D-201ENST00000237186 CYB5RLQ6IPT4 315 aa22.09■■□□□ 1.13
UBE3D-201ENST00000237186 RIMBP3CA6NJZ7 1639 aa22.09■■□□□ 1.13
UBE3D-201ENST00000237186 RIMBP3BA6NNM3 1639 aa22.09■■□□□ 1.13
UBE3D-201ENST00000237186 DEPDC5O75140 1603 aa22.09■■□□□ 1.13
UBE3D-201ENST00000237186 RIMBP3Q9UFD9 1639 aa22.09■■□□□ 1.13
UBE3D-201ENST00000237186 PRDM15P57071 1507 aaPredicted RBP22.09■■□□□ 1.13
UBE3D-201ENST00000237186 INO80Q9ULG1 1556 aaPredicted RBP22.09■■□□□ 1.13
UBE3D-201ENST00000237186 ATP7AQ04656 1500 aa22.08■■□□□ 1.12
UBE3D-201ENST00000237186 SCAPERQ9BY12 1400 aa22.07■■□□□ 1.12
UBE3D-201ENST00000237186 VWDEQ8N2E2 1590 aa22.06■■□□□ 1.12
UBE3D-201ENST00000237186 ADGRL1O94910 1474 aa22.06■■□□□ 1.12
UBE3D-201ENST00000237186 RALBP1Q15311 655 aa22.06■■□□□ 1.12
UBE3D-201ENST00000237186 BCANQ96GW7 911 aa22.06■■□□□ 1.12
UBE3D-201ENST00000237186 TRPM2O94759 1503 aa22.06■■□□□ 1.12
UBE3D-201ENST00000237186 ERICH6BQ5W0A0 696 aa22.05■■□□□ 1.12
UBE3D-201ENST00000237186 TESK2Q96S53 571 aa22.05■■□□□ 1.12
UBE3D-201ENST00000237186 CD109Q6YHK3 1445 aa22.04■■□□□ 1.12
UBE3D-201ENST00000237186 PNISRQ8TF01 805 aaKnown RBP22.03■■□□□ 1.12
UBE3D-201ENST00000237186 KANK1Q14678 1352 aa22.03■■□□□ 1.12
UBE3D-201ENST00000237186 E9PCH4 1651 aa22.03■■□□□ 1.12
UBE3D-201ENST00000237186 COL17A1Q9UMD9 1497 aaPredicted RBP22.02■■□□□ 1.12
UBE3D-201ENST00000237186 TSHZ2Q9NRE2 1034 aa22.01■■□□□ 1.11
UBE3D-201ENST00000237186 BRD4O60885 1362 aaPredicted RBP22.01■■□□□ 1.11
UBE3D-201ENST00000237186 WASHC2CQ9Y4E1 1318 aa22.01■■□□□ 1.11
UBE3D-201ENST00000237186 MYBBP1AQ9BQG0 1328 aaKnown RBP22■■□□□ 1.11
UBE3D-201ENST00000237186 TET3O43151 1660 aa22■■□□□ 1.11
UBE3D-201ENST00000237186 NEURL4Q96JN8 1562 aa21.99■■□□□ 1.11
UBE3D-201ENST00000237186 PER1O15534 1290 aaPredicted RBP21.99■■□□□ 1.11
UBE3D-201ENST00000237186 TMC1Q8TDI8 760 aa21.98■■□□□ 1.11
UBE3D-201ENST00000237186 RNF17Q9BXT8 1623 aaKnown RBP21.98■■□□□ 1.11
UBE3D-201ENST00000237186 KIF3BO15066 747 aa21.97■■□□□ 1.11
UBE3D-201ENST00000237186 CFAP74Q9C0B2 1584 aa21.97■■□□□ 1.11
UBE3D-201ENST00000237186 LRPPRCP42704 1394 aaKnown RBP21.96■■□□□ 1.11
UBE3D-201ENST00000237186 PARD3Q8TEW0 1356 aa21.96■■□□□ 1.11
UBE3D-201ENST00000237186 TMF1P82094 1093 aa21.95■■□□□ 1.1
UBE3D-201ENST00000237186 ZNF518AQ6AHZ1 1483 aa21.95■■□□□ 1.1
UBE3D-201ENST00000237186 DISP3Q9P2K9 1392 aa21.94■■□□□ 1.1
UBE3D-201ENST00000237186 SPHKAPQ2M3C7 1700 aa21.94■■□□□ 1.1
UBE3D-201ENST00000237186 MADDQ8WXG6 1647 aa21.93■■□□□ 1.1
UBE3D-201ENST00000237186 MROH1Q8NDA8 1641 aa21.93■■□□□ 1.1
UBE3D-201ENST00000237186 SMG6Q86US8 1419 aaKnown RBP21.93■■□□□ 1.1
UBE3D-201ENST00000237186 MYT1LQ9UL68 1186 aa21.92■■□□□ 1.1
UBE3D-201ENST00000237186 CLTCL1P53675 1640 aa21.92■■□□□ 1.1
UBE3D-201ENST00000237186 CEP152O94986 1710 aa21.91■■□□□ 1.1
UBE3D-201ENST00000237186 LMTK2Q8IWU2 1503 aa21.91■■□□□ 1.1
UBE3D-201ENST00000237186 NLRP13Q86W25 1043 aa21.9■■□□□ 1.1
UBE3D-201ENST00000237186 CNGB1Q14028 1251 aaPredicted RBP21.9■■□□□ 1.1
UBE3D-201ENST00000237186 KIDINS220Q9ULH0 1771 aa21.89■■□□□ 1.09
UBE3D-201ENST00000237186 POGZQ7Z3K3 1410 aa21.88■■□□□ 1.09
UBE3D-201ENST00000237186 NEO1Q92859 1461 aa21.88■■□□□ 1.09
UBE3D-201ENST00000237186 SCAF11Q99590 1463 aaKnown RBP21.88■■□□□ 1.09
UBE3D-201ENST00000237186 MLH3Q9UHC1 1453 aa21.88■■□□□ 1.09
UBE3D-201ENST00000237186 NUDCQ9Y266 331 aa21.86■■□□□ 1.09
UBE3D-201ENST00000237186 GLI2P10070 1586 aa21.86■■□□□ 1.09
UBE3D-201ENST00000237186 EFCAB6Q5THR3 1501 aa21.85■■□□□ 1.09
UBE3D-201ENST00000237186 MAP3K4Q9Y6R4 1608 aa21.85■■□□□ 1.09
UBE3D-201ENST00000237186 PANK3Q9H999 370 aa21.85■■□□□ 1.09
UBE3D-201ENST00000237186 INSRP06213 1382 aa21.84■■□□□ 1.09
UBE3D-201ENST00000237186 PPP4R2Q9NY27 417 aa21.84■■□□□ 1.09
UBE3D-201ENST00000237186 IQGAP1P46940 1657 aa21.84■■□□□ 1.09
UBE3D-201ENST00000237186 MYOM2P54296 1465 aa21.83■■□□□ 1.09
UBE3D-201ENST00000237186 RNF123Q5XPI4 1314 aa21.83■■□□□ 1.08
UBE3D-201ENST00000237186 CDCA8Q53HL2 280 aa21.83■■□□□ 1.08
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms