RNA–Protein interactions for RNA: ENST00000225441.11

RUNDC3A-201, Transcript of RUN domain containing 3A, humanhuman

TSL 1 (best) BASIC

Gene RUNDC3A, Length 1,821 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RUNDC3A-201ENST00000225441 RAPGEF3O95398 923 aa35.03■■■■□ 3.2
RUNDC3A-201ENST00000225441 MYT1LQ9UL68 1186 aa35.03■■■■□ 3.2
RUNDC3A-201ENST00000225441 ANP32CO43423 234 aa35.01■■■■□ 3.19
RUNDC3A-201ENST00000225441 FRMPD1Q5SYB0 1578 aa34.99■■■■□ 3.19
RUNDC3A-201ENST00000225441 MPHOSPH9Q99550 1183 aa34.97■■■■□ 3.19
RUNDC3A-201ENST00000225441 PZPP20742 1482 aa34.97■■■■□ 3.19
RUNDC3A-201ENST00000225441 KDM5DQ9BY66 1539 aa34.96■■■■□ 3.19
RUNDC3A-201ENST00000225441 UNC13BO14795 1591 aa34.95■■■■□ 3.18
RUNDC3A-201ENST00000225441 MYT1Q01538 1121 aa34.95■■■■□ 3.18
RUNDC3A-201ENST00000225441 NUP155O75694 1391 aa34.92■■■■□ 3.18
RUNDC3A-201ENST00000225441 DHX29Q7Z478 1369 aaKnown RBP34.92■■■■□ 3.18
RUNDC3A-201ENST00000225441 ZMYM4Q5VZL5 1548 aa34.91■■■■□ 3.18
RUNDC3A-201ENST00000225441 ABCA6Q8N139 1617 aa34.9■■■■□ 3.18
RUNDC3A-201ENST00000225441 SLC4A1APQ9BWU0 796 aaKnown RBP34.9■■■■□ 3.18
RUNDC3A-201ENST00000225441 A2MP01023 1474 aa34.88■■■■□ 3.17
RUNDC3A-201ENST00000225441 MAGI2Q86UL8 1455 aa34.87■■■■□ 3.17
RUNDC3A-201ENST00000225441 EIF2AK4Q9P2K8 1649 aaKnown RBP34.87■■■■□ 3.17
RUNDC3A-201ENST00000225441 TRHP20396 242 aaPredicted RBP34.86■■■■□ 3.17
RUNDC3A-201ENST00000225441 DIP2CQ9Y2E4 1556 aa34.84■■■■□ 3.17
RUNDC3A-201ENST00000225441 COL17A1Q9UMD9 1497 aaPredicted RBP34.83■■■■□ 3.17
RUNDC3A-201ENST00000225441 FAM135AQ9P2D6 1515 aa34.81■■■■□ 3.16
RUNDC3A-201ENST00000225441 YEATS2Q9ULM3 1422 aa34.8■■■■□ 3.16
RUNDC3A-201ENST00000225441 DEPDC5O75140 1603 aa34.8■■■■□ 3.16
RUNDC3A-201ENST00000225441 IQGAP3Q86VI3 1631 aa34.79■■■■□ 3.16
RUNDC3A-201ENST00000225441 GRWD1Q9BQ67 446 aaKnown RBP eCLIP34.78■■■■□ 3.16
RUNDC3A-201ENST00000225441 FOXD1Q16676 465 aa34.76■■■■□ 3.15
RUNDC3A-201ENST00000225441 KIF3BO15066 747 aa34.75■■■■□ 3.15
RUNDC3A-201ENST00000225441 PKD2Q13563 968 aa34.74■■■■□ 3.15
RUNDC3A-201ENST00000225441 HIRIP3Q9BW71 556 aaPredicted RBP34.74■■■■□ 3.15
RUNDC3A-201ENST00000225441 BCORL1Q5H9F3 1711 aa34.71■■■■□ 3.15
RUNDC3A-201ENST00000225441 ANKRD30BQ9BXX2 1392 aa34.71■■■■□ 3.15
RUNDC3A-201ENST00000225441 PRDM15P57071 1507 aaPredicted RBP34.7■■■■□ 3.15
RUNDC3A-201ENST00000225441 MROH1Q8NDA8 1641 aa34.7■■■■□ 3.15
RUNDC3A-201ENST00000225441 RPRD2Q5VT52 1461 aaKnown RBP34.69■■■■□ 3.14
RUNDC3A-201ENST00000225441 RNF17Q9BXT8 1623 aaKnown RBP34.69■■■■□ 3.14
RUNDC3A-201ENST00000225441 EIF4G2P78344 907 aaKnown RBP eCLIP34.68■■■■□ 3.14
RUNDC3A-201ENST00000225441 VWDEQ8N2E2 1590 aa34.67■■■■□ 3.14
RUNDC3A-201ENST00000225441 ATP10AO60312 1499 aa34.66■■■■□ 3.14
RUNDC3A-201ENST00000225441 KANK1Q14678 1352 aa34.65■■■■□ 3.14
RUNDC3A-201ENST00000225441 HSPA5P11021 654 aaKnown RBP34.63■■■■□ 3.13
RUNDC3A-201ENST00000225441 REREQ9P2R6 1566 aa34.62■■■■□ 3.13
RUNDC3A-201ENST00000225441 ARHGEF40Q8TER5 1519 aa34.62■■■■□ 3.13
RUNDC3A-201ENST00000225441 L3MBTL2Q969R5 705 aa34.58■■■■□ 3.13
RUNDC3A-201ENST00000225441 TET3O43151 1660 aa34.56■■■■□ 3.12
RUNDC3A-201ENST00000225441 WASHC2AQ641Q2 1341 aa34.56■■■■□ 3.12
RUNDC3A-201ENST00000225441 NEFLP07196 543 aa34.55■■■■□ 3.12
RUNDC3A-201ENST00000225441 CNTLNQ9NXG0 1405 aa34.54■■■■□ 3.12
RUNDC3A-201ENST00000225441 GGT6Q6P531 493 aa34.53■■■■□ 3.12
RUNDC3A-201ENST00000225441 LMTK2Q8IWU2 1503 aa34.53■■■■□ 3.12
RUNDC3A-201ENST00000225441 AGLP35573 1532 aa34.52■■■■□ 3.12
RUNDC3A-201ENST00000225441 E9PCH4 1651 aa34.5■■■■□ 3.11
RUNDC3A-201ENST00000225441 CEP152O94986 1710 aa34.47■■■■□ 3.11
RUNDC3A-201ENST00000225441 POLR1AO95602 1720 aaPredicted RBP34.46■■■■□ 3.11
RUNDC3A-201ENST00000225441 FKBP8Q14318 412 aa34.46■■■■□ 3.11
RUNDC3A-201ENST00000225441 EFCAB6Q5THR3 1501 aa34.46■■■■□ 3.11
RUNDC3A-201ENST00000225441 PLA2R1Q13018 1463 aa34.45■■■■□ 3.11
RUNDC3A-201ENST00000225441 SIGLEC1Q9BZZ2 1709 aa34.44■■■■□ 3.1
RUNDC3A-201ENST00000225441 ABCC3O15438 1527 aa34.44■■■■□ 3.1
RUNDC3A-201ENST00000225441 CCDC7Q96M83 1385 aa34.44■■■■□ 3.1
RUNDC3A-201ENST00000225441 SPATA31E1Q6ZUB1 1445 aa34.41■■■■□ 3.1
RUNDC3A-201ENST00000225441 TSHZ2Q9NRE2 1034 aa34.39■■■■□ 3.1
RUNDC3A-201ENST00000225441 WASHC2CQ9Y4E1 1318 aa34.39■■■■□ 3.1
RUNDC3A-201ENST00000225441 ZC3H13Q5T200 1668 aaKnown RBP34.39■■■■□ 3.1
RUNDC3A-201ENST00000225441 CCDC144AA2RUR9 1427 aa34.38■■■■□ 3.09
RUNDC3A-201ENST00000225441 PTPRTO14522 1441 aa34.36■■■■□ 3.09
RUNDC3A-201ENST00000225441 SPHKAPQ2M3C7 1700 aa34.35■■■■□ 3.09
RUNDC3A-201ENST00000225441 CAMSAP1Q5T5Y3 1602 aa34.35■■■■□ 3.09
RUNDC3A-201ENST00000225441 TRPM2O94759 1503 aa34.35■■■■□ 3.09
RUNDC3A-201ENST00000225441 NBPF8Q3BBV2 869 aa34.32■■■■□ 3.09
RUNDC3A-201ENST00000225441 NPATQ14207 1427 aa34.3■■■■□ 3.08
RUNDC3A-201ENST00000225441 PPP6R1Q9UPN7 881 aa34.3■■■■□ 3.08
RUNDC3A-201ENST00000225441 ARHGAP31Q2M1Z3 1444 aa34.26■■■■□ 3.08
RUNDC3A-201ENST00000225441 ARID4BQ4LE39 1312 aaPredicted RBP34.26■■■■□ 3.07
RUNDC3A-201ENST00000225441 ERICH6BQ5W0A0 696 aa34.25■■■■□ 3.07
RUNDC3A-201ENST00000225441 PRKRIP1Q9H875 184 aaPredicted RBP34.24■■■■□ 3.07
RUNDC3A-201ENST00000225441 HNRNPUQ00839 825 aaKnown RBP eCLIP34.23■■■■□ 3.07
RUNDC3A-201ENST00000225441 MLECQ14165 292 aa34.22■■■■□ 3.07
RUNDC3A-201ENST00000225441 CLTCL1P53675 1640 aa34.21■■■■□ 3.07
RUNDC3A-201ENST00000225441 UHRF1BP1Q6BDS2 1440 aa34.2■■■■□ 3.07
RUNDC3A-201ENST00000225441 C11orf95C9JLR9 678 aaPredicted RBP34.2■■■■□ 3.07
RUNDC3A-201ENST00000225441 KIF7Q2M1P5 1343 aa34.18■■■■□ 3.06
RUNDC3A-201ENST00000225441 CLTCQ00610 1675 aaKnown RBP34.17■■■■□ 3.06
RUNDC3A-201ENST00000225441 NOS1P29475 1434 aa34.15■■■■□ 3.06
RUNDC3A-201ENST00000225441 BCANQ96GW7 911 aa34.14■■■■□ 3.06
RUNDC3A-201ENST00000225441 UGGT1Q9NYU2 1555 aa34.13■■■■□ 3.05
RUNDC3A-201ENST00000225441 CFAP65Q6ZU64 1925 aaKnown RBP34.09■■■■□ 3.05
RUNDC3A-201ENST00000225441 RALGAPBQ86X10 1494 aa34.08■■■■□ 3.05
RUNDC3A-201ENST00000225441 PREX1Q8TCU6 1659 aa34.08■■■■□ 3.05
RUNDC3A-201ENST00000225441 SYNMO15061 1565 aa34.07■■■■□ 3.05
RUNDC3A-201ENST00000225441 RGL3Q3MIN7 710 aa34.07■■■■□ 3.04
RUNDC3A-201ENST00000225441 NEURL4Q96JN8 1562 aa34.07■■■■□ 3.04
RUNDC3A-201ENST00000225441 ESF1Q9H501 851 aaKnown RBP34.07■■■■□ 3.04
RUNDC3A-201ENST00000225441 ROCK2O75116 1388 aaKnown RBP34.06■■■■□ 3.04
RUNDC3A-201ENST00000225441 USP47Q96K76 1375 aa34.06■■■■□ 3.04
RUNDC3A-201ENST00000225441 ZBED9Q6R2W3 1325 aa34.05■■■■□ 3.04
RUNDC3A-201ENST00000225441 DCAF11Q8TEB1 546 aa34.04■■■■□ 3.04
RUNDC3A-201ENST00000225441 PIK3C2BO00750 1634 aa34.03■■■■□ 3.04
RUNDC3A-201ENST00000225441 KIF1BO60333 1816 aa34.02■■■■□ 3.04
RUNDC3A-201ENST00000225441 ERVK-7P63135 1459 aa34.02■■■■□ 3.04
RUNDC3A-201ENST00000225441 MRS2Q9HD23 443 aa34.02■■■■□ 3.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms