RNA–Protein interactions for RNA: ENSMUST00000035283.10

Nup88-201, Transcript of Nuclear pore complex protein Nup88, mousemouse

TSL 1 (best) BASIC

Gene Nup88, Length 2,450 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88-201ENSMUST00000035283 NeflP08551 543 aa17.87■□□□□ 0.45
Nup88-201ENSMUST00000035283 Prkrip1Q9CWV6 186 aaKnown RBP17.86■□□□□ 0.45
Nup88-201ENSMUST00000035283 Trpm2Q91YD4 1506 aa17.86■□□□□ 0.45
Nup88-201ENSMUST00000035283 Cpsf1Q9EPU4 1441 aaKnown RBP17.85■□□□□ 0.45
Nup88-201ENSMUST00000035283 Hsp90aa1P07901 733 aaKnown RBP17.84■□□□□ 0.45
Nup88-201ENSMUST00000035283 Shroom2A2ALU4 1481 aa17.84■□□□□ 0.45
Nup88-201ENSMUST00000035283 Polr3aB2RXC6 1390 aa17.83■□□□□ 0.44
Nup88-201ENSMUST00000035283 Mrc2Q64449 1479 aa17.83■□□□□ 0.44
Nup88-201ENSMUST00000035283 DroshaQ5HZJ0 1373 aaKnown RBP17.82■□□□□ 0.44
Nup88-201ENSMUST00000035283 Anp32bQ9EST5 272 aaKnown RBP17.82■□□□□ 0.44
Nup88-201ENSMUST00000035283 Magi1Q6RHR9 1471 aa17.81■□□□□ 0.44
Nup88-201ENSMUST00000035283 Ttll13A4Q9F6 804 aa17.8■□□□□ 0.44
Nup88-201ENSMUST00000035283 Asxl1P59598 1514 aa17.79■□□□□ 0.44
Nup88-201ENSMUST00000035283 Dot1lQ6XZL8 1540 aa17.79■□□□□ 0.44
Nup88-201ENSMUST00000035283 Abcc2Q8VI47 1543 aa17.79■□□□□ 0.44
Nup88-201ENSMUST00000035283 Prex2Q3LAC4 1598 aa17.79■□□□□ 0.44
Nup88-201ENSMUST00000035283 Ccdc141E9Q8Q6 1531 aa17.79■□□□□ 0.44
Nup88-201ENSMUST00000035283 Fam163aQ8CAA5 168 aa17.78■□□□□ 0.44
Nup88-201ENSMUST00000035283 Mapkbp1Q6NS57 1503 aa17.78■□□□□ 0.44
Nup88-201ENSMUST00000035283 B4galnt3Q6L8S8 986 aa17.77■□□□□ 0.44
Nup88-201ENSMUST00000035283 Pank3Q8R2W9 370 aa17.77■□□□□ 0.44
Nup88-201ENSMUST00000035283 Nup160Q9Z0W3 1402 aaKnown RBP17.77■□□□□ 0.44
Nup88-201ENSMUST00000035283 Inpp5dQ9ES52 1191 aa17.76■□□□□ 0.43
Nup88-201ENSMUST00000035283 TnikP83510 1323 aa17.76■□□□□ 0.43
Nup88-201ENSMUST00000035283 Iqgap1Q9JKF1 1657 aaKnown RBP17.76■□□□□ 0.43
Nup88-201ENSMUST00000035283 Mroh2aD3Z750 1679 aa17.75■□□□□ 0.43
Nup88-201ENSMUST00000035283 Kdm5cP41230 1554 aa17.74■□□□□ 0.43
Nup88-201ENSMUST00000035283 Esx1O88933 382 aa17.74■□□□□ 0.43
Nup88-201ENSMUST00000035283 Fkbp15Q6P9Q6 1216 aaKnown RBP17.74■□□□□ 0.43
Nup88-201ENSMUST00000035283 Zmym4A2A791 1549 aaKnown RBP17.73■□□□□ 0.43
Nup88-201ENSMUST00000035283 Gapvd1Q6PAR5 1458 aa17.73■□□□□ 0.43
Nup88-201ENSMUST00000035283 Mlh3A0A1Y7VMP7 1443 aa17.73■□□□□ 0.43
Nup88-201ENSMUST00000035283 PrxO55103 1391 aa17.73■□□□□ 0.43
Nup88-201ENSMUST00000035283 Gtf3c3Q3TMP1 882 aa17.73■□□□□ 0.43
Nup88-201ENSMUST00000035283 Ccdc9Q8VC31 543 aaKnown RBP17.73■□□□□ 0.43
Nup88-201ENSMUST00000035283 Ak9G3UYQ4 1894 aa17.73■□□□□ 0.43
Nup88-201ENSMUST00000035283 Tubgcp6G5E8P0 1769 aa17.72■□□□□ 0.43
Nup88-201ENSMUST00000035283 PtprgQ05909 1442 aa17.71■□□□□ 0.43
Nup88-201ENSMUST00000035283 Rock1P70335 1354 aa17.71■□□□□ 0.43
Nup88-201ENSMUST00000035283 Tarbp1E9Q368 1579 aa17.71■□□□□ 0.43
Nup88-201ENSMUST00000035283 DaxxO35613 739 aa17.71■□□□□ 0.42
Nup88-201ENSMUST00000035283 Nkx1-2P42580 305 aa17.71■□□□□ 0.42
Nup88-201ENSMUST00000035283 CrbnQ8C7D2 445 aa17.71■□□□□ 0.42
Nup88-201ENSMUST00000035283 Dbr1Q923B1 550 aa17.7■□□□□ 0.42
Nup88-201ENSMUST00000035283 Ifit1bl1D3Z6F0 470 aa17.7■□□□□ 0.42
Nup88-201ENSMUST00000035283 Rrp7aQ9D1C9 280 aaKnown RBP17.7■□□□□ 0.42
Nup88-201ENSMUST00000035283 Ssh2Q5SW75 1423 aa17.69■□□□□ 0.42
Nup88-201ENSMUST00000035283 CanxP35564 591 aaKnown RBP17.69■□□□□ 0.42
Nup88-201ENSMUST00000035283 Irx3P81067 507 aa17.69■□□□□ 0.42
Nup88-201ENSMUST00000035283 Caskin1Q6P9K8 1431 aa17.67■□□□□ 0.42
Nup88-201ENSMUST00000035283 Zscan10Q3URR7 782 aa17.67■□□□□ 0.42
Nup88-201ENSMUST00000035283 Kif16bB1AVY7 1312 aa17.67■□□□□ 0.42
Nup88-201ENSMUST00000035283 Atp7aQ64430 1491 aa17.66■□□□□ 0.42
Nup88-201ENSMUST00000035283 4933416C03RikQ3V063 378 aa17.65■□□□□ 0.42
Nup88-201ENSMUST00000035283 Cd109Q8R422 1442 aa17.65■□□□□ 0.42
Nup88-201ENSMUST00000035283 Fmn2Q9JL04 1578 aa17.65■□□□□ 0.42
Nup88-201ENSMUST00000035283 Kdm2bQ6P1G2 1309 aa17.65■□□□□ 0.42
Nup88-201ENSMUST00000035283 Lrrc9Q8CDN9 1456 aa17.65■□□□□ 0.42
Nup88-201ENSMUST00000035283 Sart3Q9JLI8 962 aaKnown RBP17.64■□□□□ 0.42
Nup88-201ENSMUST00000035283 Apbb1Q9QXJ1 710 aa17.64■□□□□ 0.42
Nup88-201ENSMUST00000035283 Plch2A2AP18 1501 aa17.64■□□□□ 0.41
Nup88-201ENSMUST00000035283 Setd1aE9PYH6 1716 aa17.64■□□□□ 0.41
Nup88-201ENSMUST00000035283 Eif4g3Q80XI3 1579 aaKnown RBP17.64■□□□□ 0.41
Nup88-201ENSMUST00000035283 Tex14Q7M6U3 1450 aa17.63■□□□□ 0.41
Nup88-201ENSMUST00000035283 Clstn2Q9ER65 966 aa17.61■□□□□ 0.41
Nup88-201ENSMUST00000035283 Tmf1B9EKI3 1091 aa17.61■□□□□ 0.41
Nup88-201ENSMUST00000035283 Plcd4Q8K3R3 807 aa17.61■□□□□ 0.41
Nup88-201ENSMUST00000035283 Ppp2r1aQ76MZ3 589 aa17.6■□□□□ 0.41
Nup88-201ENSMUST00000035283 Pbrm1Q8BSQ9 1634 aaKnown RBP17.6■□□□□ 0.41
Nup88-201ENSMUST00000035283 Mbd3Q9Z2D8 285 aaKnown RBP17.6■□□□□ 0.41
Nup88-201ENSMUST00000035283 Zcchc11B2RX14 1644 aaKnown RBP17.6■□□□□ 0.41
Nup88-201ENSMUST00000035283 Rwdd1Q9CQK7 243 aa17.6■□□□□ 0.41
Nup88-201ENSMUST00000035283 Adgrl2Q8JZZ7 1487 aa17.59■□□□□ 0.41
Nup88-201ENSMUST00000035283 Slc4a1apE9PX68 744 aa17.59■□□□□ 0.41
Nup88-201ENSMUST00000035283 Chmp5Q9D7S9 219 aa17.59■□□□□ 0.41
Nup88-201ENSMUST00000035283 EspnQ9ET47 871 aa17.59■□□□□ 0.41
Nup88-201ENSMUST00000035283 Ttc41Q692V3 1318 aa17.58■□□□□ 0.41
Nup88-201ENSMUST00000035283 NudcO35685 332 aaKnown RBP17.57■□□□□ 0.4
Nup88-201ENSMUST00000035283 Trappc8E9PWG2 1437 aa17.57■□□□□ 0.4
Nup88-201ENSMUST00000035283 Adamts13Q769J6 1426 aa17.57■□□□□ 0.4
Nup88-201ENSMUST00000035283 Dnai1Q8C0M8 701 aa17.56■□□□□ 0.4
Nup88-201ENSMUST00000035283 Sart1Q9Z315 806 aaKnown RBP17.56■□□□□ 0.4
Nup88-201ENSMUST00000035283 Arid4bA2CG63 1314 aaKnown RBP17.55■□□□□ 0.4
Nup88-201ENSMUST00000035283 Mroh3A0A1D5RM54 893 aa17.55■□□□□ 0.4
Nup88-201ENSMUST00000035283 Jph4Q80WT0 628 aa17.54■□□□□ 0.4
Nup88-201ENSMUST00000035283 Plekhh1Q80TI1 1356 aa17.53■□□□□ 0.4
Nup88-201ENSMUST00000035283 Neurod2Q62414 383 aa17.53■□□□□ 0.4
Nup88-201ENSMUST00000035283 Kdm2aP59997 1161 aa17.52■□□□□ 0.4
Nup88-201ENSMUST00000035283 Speer4f1Q9D5Q6 258 aa17.52■□□□□ 0.4
Nup88-201ENSMUST00000035283 Neo1P97798 1493 aa17.51■□□□□ 0.39
Nup88-201ENSMUST00000035283 Gm16486A0A1D5RMD1 1434 aa17.51■□□□□ 0.39
Nup88-201ENSMUST00000035283 Dcaf11Q91VU6 549 aa17.51■□□□□ 0.39
Nup88-201ENSMUST00000035283 Fam208aQ69ZR9 1610 aaKnown RBP17.51■□□□□ 0.39
Nup88-201ENSMUST00000035283 Rab3gap2Q8BMG7 1366 aa17.51■□□□□ 0.39
Nup88-201ENSMUST00000035283 Smc5Q8CG46 1101 aaKnown RBP17.5■□□□□ 0.39
Nup88-201ENSMUST00000035283 Dnajc5bQ9CQ94 199 aa17.5■□□□□ 0.39
Nup88-201ENSMUST00000035283 Srcin1Q9QWI6 1250 aa17.5■□□□□ 0.39
Nup88-201ENSMUST00000035283 Fancd2Q80V62 1450 aa17.5■□□□□ 0.39
Nup88-201ENSMUST00000035283 Fam184bQ0KK56 942 aa17.5■□□□□ 0.39
Nup88-201ENSMUST00000035283 Arhgap5P97393 1501 aa17.5■□□□□ 0.39
Retrieved 100 of 22,080 RNA–protein pairs in 15.2 ms