RNA–Protein interactions for RNA: ENST00000641597.1

PHGDH-223, Transcript of phosphoglycerate dehydrogenase, human

APPRIS P1 BASIC

Gene PHGDH, Length 2,585 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PHGDH-223	ENST00000641597	TMEM39B	Q9GZU3	492 aa		18.33	■□□□□ 0.52
PHGDH-223	ENST00000641597	AGPAT3	Q9NRZ7	376 aa		18.33	■□□□□ 0.52
PHGDH-223	ENST00000641597		H0YIN7	160 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	C21orf2	O43822	256 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	HOXA7	P31268	230 aa	Predicted RBP	18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	PPFIA1	Q13136	1202 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	ZNF211	Q13398	564 aa	Predicted RBP	18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	DAW1	Q8N136	415 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	AGBL1	Q96MI9	1066 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	LXN	Q9BS40	222 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	ZNF577	Q9BSK1	485 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	ZNF646	O15015	1829 aa	Predicted RBP	18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	SHTN1	A0MZ66	631 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	VGLL3	A8MV65	326 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	GCOM1	H8Y6P7	765 aa	Predicted RBP	18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	PIK3CD	O00329	1044 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	POLR2M	P0CAP2	368 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	PSMC2	P35998	433 aa	Known RBP	18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	PHLDB3	Q6NSJ2	640 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	NT5DC3	Q86UY8	548 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	SCFD2	Q8WU76	684 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	SLC20A1	Q8WUM9	679 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	SLC5A5	Q92911	643 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	VEZT	Q9HBM0	779 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	METTL14	Q9HCE5	456 aa	Known RBP	18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	COL20A1	Q9P218	1284 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	RNF14	Q9UBS8	474 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	PLAA	Q9Y263	795 aa		18.32	■□□□□ 0.52
PHGDH-223	ENST00000641597	GOLGA8K	D6RF30	607 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	KRIT1	O00522	736 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	TTI1	O43156	1089 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	PPIP5K2	O43314	1243 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	OPA1	O60313	960 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	UAP1	Q16222	522 aa	Predicted RBP	18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	GRIPAP1	Q4V328	841 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	CEP55	Q53EZ4	464 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	DCAF12L1	Q5VU92	463 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	ALS2CL	Q60I27	953 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	CC2D2B	Q6DHV5	1058 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	MAATS1	Q7Z4T9	603 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	SLC35G2	Q8TBE7	412 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	ATRNL1	Q5VV63	1379 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	SLC16A3	O15427	465 aa	Known RBP	18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	DAPK3	O43293	454 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	ITGB5	P18084	799 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	SOX5	P35711	763 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	PRELP	P51888	382 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	PRPF4B	Q13523	1007 aa	Known RBP	18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	ZNF746	Q6NUN9	644 aa	Predicted RBP	18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	MRI	Q9BWK5	157 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	THAP2	Q9H0W7	228 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	RASSF4	Q9H2L5	321 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	DPH5	Q9H2P9	285 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	COG5	Q9UP83	839 aa		18.31	■□□□□ 0.52
PHGDH-223	ENST00000641597	EIF3H	O15372	352 aa	Known RBP eCLIP	18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	HIP1R	O75146	1068 aa		18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	HPD	P32754	393 aa	Predicted RBP	18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	STAT1	P42224	750 aa		18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	TNNC1	P63316	161 aa		18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	HDLBP	Q00341	1268 aa	Known RBP	18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	CEP85L	Q5SZL2	805 aa		18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	SLC30A5	Q8TAD4	765 aa		18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	KAT5	Q92993	513 aa		18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	FAM84A	Q96KN4	292 aa		18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	TRIM51	Q9BSJ1	452 aa		18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	STXBP5L	Q9Y2K9	1186 aa		18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	BZW2	Q9Y6E2	419 aa	Known RBP	18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	MYH11	P35749	1972 aa		18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	FOXN3	O00409	490 aa	Predicted RBP	18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	MAPK7	Q13164	816 aa		18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	PPP2R5C	Q13362	524 aa		18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	WDR11	Q9BZH6	1224 aa		18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	INTS2	Q9H0H0	1204 aa	Known RBP	18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	HOMER2	Q9NSB8	354 aa		18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	RBBP6	Q7Z6E9	1792 aa	Known RBP	18.3	■□□□□ 0.52
PHGDH-223	ENST00000641597	PGRMC1	O00264	195 aa	Known RBP	18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	IPO5	O00410	1097 aa	Known RBP	18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	EXOC3	O60645	756 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	HSD17B3	P37058	310 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	SEC24C	P53992	1094 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	CPNE8	Q86YQ8	564 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	SYCP3	Q8IZU3	236 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	18.29	■□□□□ 0.52	6e-10	■■■■□ 22.4
PHGDH-223	ENST00000641597	TAF1D	Q9H5J8	278 aa	Predicted RBP	18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	TMX2	Q9Y320	296 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	FRMPD4	Q14CM0	1322 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	BTNL10	A8MVZ5	291 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	NFIB	O00712	420 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	ENTPD3	O75355	529 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	FGG	P02679	453 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	MKRN4P	Q13434	485 aa	Predicted RBP	18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	LLGL1	Q15334	1064 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	LDHD	Q86WU2	507 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	RUBCN	Q92622	972 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	CBWD1	Q9BRT8	395 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	PDGFD	Q9GZP0	370 aa	Predicted RBP	18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	ERVK-5	Q9HDB9	667 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	TUFT1	Q9NNX1	390 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	TMOD4	Q9NZQ9	345 aa		18.29	■□□□□ 0.52
PHGDH-223	ENST00000641597	KIF13B	Q9NQT8	1826 aa		18.28	■□□□□ 0.52

Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms