RNA–Protein interactions for RNA: ENST00000640653.1

VEGFA-232, Transcript of vascular endothelial growth factor A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VEGFA, Length 1,170 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-232ENST00000640653 SAFBQ15424 915 aaKnown RBP eCLIP28.26■■■□□ 2.11
VEGFA-232ENST00000640653 NCAPH2Q6IBW4 605 aa28.26■■■□□ 2.11
VEGFA-232ENST00000640653 ZNF668Q96K58 619 aaPredicted RBP28.26■■■□□ 2.11
VEGFA-232ENST00000640653 UHRF1Q96T88 793 aaPredicted RBP28.26■■■□□ 2.11
VEGFA-232ENST00000640653 ELAC1Q9H777 363 aaKnown RBP28.26■■■□□ 2.11
VEGFA-232ENST00000640653 PPME1Q9Y570 386 aa28.26■■■□□ 2.11
VEGFA-232ENST00000640653 XIRP2A4UGR9 3374 aa28.26■■■□□ 2.11
VEGFA-232ENST00000640653 GATMP50440 423 aa28.25■■■□□ 2.11
VEGFA-232ENST00000640653 FAM189BP81408 668 aa28.25■■■□□ 2.11
VEGFA-232ENST00000640653 DRP2Q13474 957 aa28.25■■■□□ 2.11
VEGFA-232ENST00000640653 CALCRLQ16602 461 aa28.25■■■□□ 2.11
VEGFA-232ENST00000640653 NAALADL2Q58DX5 795 aa28.25■■■□□ 2.11
VEGFA-232ENST00000640653 PLA2G4FQ68DD2 849 aa28.25■■■□□ 2.11
VEGFA-232ENST00000640653 EXOC8Q8IYI6 725 aa28.25■■■□□ 2.11
VEGFA-232ENST00000640653 P2RX5Q93086 422 aa28.25■■■□□ 2.11
VEGFA-232ENST00000640653 LXNQ9BS40 222 aa28.25■■■□□ 2.11
VEGFA-232ENST00000640653 GCOM2Q9BZD3 368 aaPredicted RBP28.25■■■□□ 2.11
VEGFA-232ENST00000640653 NSUN3Q9H649 340 aaKnown RBP28.25■■■□□ 2.11
VEGFA-232ENST00000640653 UBE2ZQ9H832 354 aaPredicted RBP28.25■■■□□ 2.11
VEGFA-232ENST00000640653 ATP6V0A4Q9HBG4 840 aa28.25■■■□□ 2.11
VEGFA-232ENST00000640653 CYP26B1Q9NR63 512 aa28.25■■■□□ 2.11
VEGFA-232ENST00000640653 SH2B1Q9NRF2 756 aaPredicted RBP28.25■■■□□ 2.11
VEGFA-232ENST00000640653 TMEM161AQ9NX61 479 aa28.25■■■□□ 2.11
VEGFA-232ENST00000640653 TNFRSF10AO00220 468 aa28.24■■■□□ 2.11
VEGFA-232ENST00000640653 C4orf19Q8IY42 314 aa28.24■■■□□ 2.11
VEGFA-232ENST00000640653 SUCLA2Q9P2R7 463 aaPredicted RBP28.24■■■□□ 2.11
VEGFA-232ENST00000640653 GRM6O15303 877 aa28.23■■■□□ 2.11
VEGFA-232ENST00000640653 NEMFO60524 1076 aa28.23■■■□□ 2.11
VEGFA-232ENST00000640653 HMGN5P82970 282 aaKnown RBP28.23■■■□□ 2.11
VEGFA-232ENST00000640653 SPIRE1Q08AE8 756 aa28.23■■■□□ 2.11
VEGFA-232ENST00000640653 OTUD6AQ7L8S5 288 aa28.23■■■□□ 2.11
VEGFA-232ENST00000640653 ZNF410Q86VK4 478 aa28.23■■■□□ 2.11
VEGFA-232ENST00000640653 SLC7A3Q8WY07 619 aa28.23■■■□□ 2.11
VEGFA-232ENST00000640653 C8orf76Q96K31 380 aa28.23■■■□□ 2.11
VEGFA-232ENST00000640653 CEP170P1Q96L14 293 aa28.23■■■□□ 2.11
VEGFA-232ENST00000640653 KIF2CQ99661 725 aa28.23■■■□□ 2.11
VEGFA-232ENST00000640653 ZSWIM4Q9H7M6 989 aa28.23■■■□□ 2.11
VEGFA-232ENST00000640653 PCDHA12Q9UN75 941 aa28.23■■■□□ 2.11
VEGFA-232ENST00000640653 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP28.22■■■□□ 2.11
VEGFA-232ENST00000640653 TBKBP1A7MCY6 615 aa28.22■■■□□ 2.11
VEGFA-232ENST00000640653 TCEAL5Q5H9L2 206 aa28.22■■■□□ 2.11
VEGFA-232ENST00000640653 RHPN2Q8IUC4 686 aa28.22■■■□□ 2.11
VEGFA-232ENST00000640653 DYDC2Q96IM9 177 aa28.22■■■□□ 2.11
VEGFA-232ENST00000640653 INO80BQ9C086 356 aaPredicted RBP28.22■■■□□ 2.11
VEGFA-232ENST00000640653 RGL1Q9NZL6 768 aa28.22■■■□□ 2.11
VEGFA-232ENST00000640653 WRAP73Q9P2S5 460 aaPredicted RBP28.22■■■□□ 2.11
VEGFA-232ENST00000640653 HOXA2O43364 376 aa28.21■■■□□ 2.11
VEGFA-232ENST00000640653 YWHABP31946 246 aaKnown RBP28.21■■■□□ 2.11
VEGFA-232ENST00000640653 RBM25P49756 843 aaKnown RBP28.21■■■□□ 2.11
VEGFA-232ENST00000640653 POLGP54098 1239 aaPredicted RBP28.21■■■□□ 2.11
VEGFA-232ENST00000640653 NPEPPSP55786 919 aa28.21■■■□□ 2.11
VEGFA-232ENST00000640653 GUCY1B3Q02153 619 aa28.21■■■□□ 2.11
VEGFA-232ENST00000640653 SPOUT1Q5T280 376 aaKnown RBP28.21■■■□□ 2.11
VEGFA-232ENST00000640653 FAM102BQ5T8I3 360 aa28.21■■■□□ 2.11
VEGFA-232ENST00000640653 AAASQ9NRG9 546 aa28.21■■■□□ 2.11
VEGFA-232ENST00000640653 PLAGL2Q9UPG8 496 aa28.21■■■□□ 2.11
VEGFA-232ENST00000640653 CUL9Q8IWT3 2517 aa28.2■■■□□ 2.11
VEGFA-232ENST00000640653 A0A087WZ62 844 aa28.2■■■□□ 2.1
VEGFA-232ENST00000640653 SFPQP23246 707 aaKnown RBP eCLIP28.2■■■□□ 2.1
VEGFA-232ENST00000640653 RFC5P40937 340 aa28.2■■■□□ 2.1
VEGFA-232ENST00000640653 CYP4A11Q02928 519 aa28.2■■■□□ 2.1
VEGFA-232ENST00000640653 FDXACB1Q9BRP7 624 aaPredicted RBP28.2■■■□□ 2.1
VEGFA-232ENST00000640653 TTC12Q9H892 705 aaPredicted RBP28.2■■■□□ 2.1
VEGFA-232ENST00000640653 ALG13Q9NP73 1137 aaKnown RBP28.2■■■□□ 2.1
VEGFA-232ENST00000640653 DACT1Q9NYF0 836 aa28.2■■■□□ 2.1
VEGFA-232ENST00000640653 FGFR1P11362 822 aa28.19■■■□□ 2.1
VEGFA-232ENST00000640653 FGFR4P22455 802 aa28.19■■■□□ 2.1
VEGFA-232ENST00000640653 KCNA5P22460 613 aa28.19■■■□□ 2.1
VEGFA-232ENST00000640653 CTTNQ14247 550 aaKnown RBP28.19■■■□□ 2.1
VEGFA-232ENST00000640653 FAM184AQ8NB25 1140 aa28.19■■■□□ 2.1
VEGFA-232ENST00000640653 KLHL23Q8NBE8 558 aa28.19■■■□□ 2.1
VEGFA-232ENST00000640653 NEK9Q8TD19 979 aa28.19■■■□□ 2.1
VEGFA-232ENST00000640653 NLRP4Q96MN2 994 aa28.19■■■□□ 2.1
VEGFA-232ENST00000640653 DHX33Q9H6R0 707 aaKnown RBP28.19■■■□□ 2.1
VEGFA-232ENST00000640653 PCDHB12Q9Y5F1 795 aa28.19■■■□□ 2.1
VEGFA-232ENST00000640653 NCK2O43639 380 aa28.18■■■□□ 2.1
VEGFA-232ENST00000640653 GAS2O43903 313 aaKnown RBP28.18■■■□□ 2.1
VEGFA-232ENST00000640653 CSDE1O75534 798 aaKnown RBP28.18■■■□□ 2.1
VEGFA-232ENST00000640653 ITGB1P05556 798 aa28.18■■■□□ 2.1
VEGFA-232ENST00000640653 TXKP42681 527 aa28.18■■■□□ 2.1
VEGFA-232ENST00000640653 ECHDC2Q86YB7 292 aa28.18■■■□□ 2.1
VEGFA-232ENST00000640653 TPH2Q8IWU9 490 aa28.18■■■□□ 2.1
VEGFA-232ENST00000640653 ZNF579Q8NAF0 562 aaKnown RBP28.18■■■□□ 2.1
VEGFA-232ENST00000640653 EIF2AK1Q9BQI3 630 aaKnown RBP28.18■■■□□ 2.1
VEGFA-232ENST00000640653 TMEM117Q9H0C3 514 aa28.18■■■□□ 2.1
VEGFA-232ENST00000640653 CHST12Q9NRB3 414 aa28.18■■■□□ 2.1
VEGFA-232ENST00000640653 COL4A3BPQ9Y5P4 624 aa28.18■■■□□ 2.1
VEGFA-232ENST00000640653 WNT7AO00755 349 aa28.17■■■□□ 2.1
VEGFA-232ENST00000640653 SLITRK3O94933 977 aa28.17■■■□□ 2.1
VEGFA-232ENST00000640653 RABEP1Q15276 862 aa28.17■■■□□ 2.1
VEGFA-232ENST00000640653 LEXMQ3ZCV2 418 aa28.17■■■□□ 2.1
VEGFA-232ENST00000640653 XKR9Q5GH70 373 aa28.17■■■□□ 2.1
VEGFA-232ENST00000640653 ABI1Q8IZP0 508 aa28.17■■■□□ 2.1
VEGFA-232ENST00000640653 SPPL3Q8TCT6 385 aa28.17■■■□□ 2.1
VEGFA-232ENST00000640653 TCP11Q8WWU5 503 aa28.17■■■□□ 2.1
VEGFA-232ENST00000640653 PSPC1Q8WXF1 523 aaKnown RBP28.17■■■□□ 2.1
VEGFA-232ENST00000640653 PABPC5Q96DU9 382 aaKnown RBP28.17■■■□□ 2.1
VEGFA-232ENST00000640653 MTMR9Q96QG7 549 aa28.17■■■□□ 2.1
VEGFA-232ENST00000640653 FOXP1Q9H334 677 aaPredicted RBP28.17■■■□□ 2.1
VEGFA-232ENST00000640653 KIAA1671Q9BY89 1806 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms