RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 SNX29Q8TEQ0 813 aa20.36■□□□□ 0.85
CLN3-259ENST00000637551 NFKBIZQ9BYH8 718 aa20.36■□□□□ 0.85
CLN3-259ENST00000637551 TSPYL2Q9H2G4 693 aaPredicted RBP20.36■□□□□ 0.85
CLN3-259ENST00000637551 SUGCTQ9HAC7 445 aa20.36■□□□□ 0.85
CLN3-259ENST00000637551 KCND2Q9NZV8 630 aa20.36■□□□□ 0.85
CLN3-259ENST00000637551 MSRAQ9UJ68 235 aa20.36■□□□□ 0.85
CLN3-259ENST00000637551 TNFRSF10AO00220 468 aa20.35■□□□□ 0.85
CLN3-259ENST00000637551 RPS6KA5O75582 802 aa20.35■□□□□ 0.85
CLN3-259ENST00000637551 DARSP14868 501 aaKnown RBP20.35■□□□□ 0.85
CLN3-259ENST00000637551 FOSL2P15408 326 aa20.35■□□□□ 0.85
CLN3-259ENST00000637551 NPEPPSP55786 919 aa20.35■□□□□ 0.85
CLN3-259ENST00000637551 NLRP11P59045 1033 aaKnown RBP20.35■□□□□ 0.85
CLN3-259ENST00000637551 PTPAQ15257 358 aa20.35■□□□□ 0.85
CLN3-259ENST00000637551 TRMT1LQ7Z2T5 733 aaKnown RBP20.35■□□□□ 0.85
CLN3-259ENST00000637551 IFNLR1Q8IU57 520 aaPredicted RBP20.35■□□□□ 0.85
CLN3-259ENST00000637551 HERC6Q8IVU3 1022 aa20.35■□□□□ 0.85
CLN3-259ENST00000637551 LRRC71Q8N4P6 559 aa20.35■□□□□ 0.85
CLN3-259ENST00000637551 ZNF396Q96N95 335 aaPredicted RBP20.35■□□□□ 0.85
CLN3-259ENST00000637551 TIPINQ9BVW5 301 aa20.35■□□□□ 0.85
CLN3-259ENST00000637551 GCOM2Q9BZD3 368 aaPredicted RBP20.35■□□□□ 0.85
CLN3-259ENST00000637551 C1orf112Q9NSG2 853 aa20.35■□□□□ 0.85
CLN3-259ENST00000637551 SUCLA2Q9P2R7 463 aaPredicted RBP20.35■□□□□ 0.85
CLN3-259ENST00000637551 RAPGEFL1Q9UHV5 662 aa20.35■□□□□ 0.85
CLN3-259ENST00000637551 PADI3Q9ULW8 664 aa20.35■□□□□ 0.85
CLN3-259ENST00000637551 COL4A3BPQ9Y5P4 624 aa20.35■□□□□ 0.85
CLN3-259ENST00000637551 GJB5O95377 273 aa20.34■□□□□ 0.85
CLN3-259ENST00000637551 VTNP04004 478 aa20.34■□□□□ 0.85
CLN3-259ENST00000637551 DNAJB2P25686 324 aa20.34■□□□□ 0.85
CLN3-259ENST00000637551 IL17AQ16552 155 aa20.34■□□□□ 0.85
CLN3-259ENST00000637551 KIZQ2M2Z5 673 aa20.34■□□□□ 0.85
CLN3-259ENST00000637551 TJAP1Q5JTD0 557 aa20.34■□□□□ 0.85
CLN3-259ENST00000637551 ZBTB10Q96DT7 871 aa20.34■□□□□ 0.85
CLN3-259ENST00000637551 TRAIPQ9BWF2 469 aa20.34■□□□□ 0.85
CLN3-259ENST00000637551 AGO3Q9H9G7 860 aaKnown RBP20.34■□□□□ 0.85
CLN3-259ENST00000637551 ERVK-5Q9HDB9 667 aa20.34■□□□□ 0.85
CLN3-259ENST00000637551 TMEM150BA6NC51 233 aa20.33■□□□□ 0.85
CLN3-259ENST00000637551 VWA3AA6NCI4 1184 aa20.33■□□□□ 0.85
CLN3-259ENST00000637551 YEATS4O95619 227 aa20.33■□□□□ 0.85
CLN3-259ENST00000637551 F13A1P00488 732 aa20.33■□□□□ 0.85
CLN3-259ENST00000637551 SFPQP23246 707 aaKnown RBP eCLIP20.33■□□□□ 0.85
CLN3-259ENST00000637551 TFDP1Q14186 410 aa20.33■□□□□ 0.85
CLN3-259ENST00000637551 SLC39A14Q15043 492 aa20.33■□□□□ 0.85
CLN3-259ENST00000637551 POTEGQ6S5H5 508 aa20.33■□□□□ 0.85
CLN3-259ENST00000637551 SRGAP1Q7Z6B7 1085 aa20.33■□□□□ 0.85
CLN3-259ENST00000637551 TOP1MTQ969P6 601 aa20.33■□□□□ 0.85
CLN3-259ENST00000637551 PBX4Q9BYU1 374 aa20.33■□□□□ 0.85
CLN3-259ENST00000637551 XPNPEP1Q9NQW7 623 aa20.33■□□□□ 0.85
CLN3-259ENST00000637551 CHST12Q9NRB3 414 aa20.33■□□□□ 0.85
CLN3-259ENST00000637551 DNM3Q9UQ16 869 aa20.33■□□□□ 0.85
CLN3-259ENST00000637551 SRPRBQ9Y5M8 271 aaKnown RBP20.33■□□□□ 0.85
CLN3-259ENST00000637551 EYA4O95677 639 aa20.32■□□□□ 0.84
CLN3-259ENST00000637551 CD52P31358 61 aa20.32■□□□□ 0.84
CLN3-259ENST00000637551 TMEM62Q0P6H9 643 aa20.32■□□□□ 0.84
CLN3-259ENST00000637551 PIGOQ8TEQ8 1089 aa20.32■□□□□ 0.84
CLN3-259ENST00000637551 TMEM40Q8WWA1 233 aa20.32■□□□□ 0.84
CLN3-259ENST00000637551 NLRP7Q8WX94 980 aa20.32■□□□□ 0.84
CLN3-259ENST00000637551 RAD9AQ99638 391 aa20.32■□□□□ 0.84
CLN3-259ENST00000637551 OSMRQ99650 979 aa20.32■□□□□ 0.84
CLN3-259ENST00000637551 MMTAG2Q9BU76 263 aaKnown RBP20.32■□□□□ 0.84
CLN3-259ENST00000637551 CCSER1Q9C0I3 900 aa20.32■□□□□ 0.84
CLN3-259ENST00000637551 FOXD4L1Q9NU39 408 aa20.32■□□□□ 0.84
CLN3-259ENST00000637551 KCNG1Q9UIX4 513 aa20.32■□□□□ 0.84
CLN3-259ENST00000637551 INSL6Q9Y581 213 aa20.32■□□□□ 0.84
CLN3-259ENST00000637551 ATP6V1DQ9Y5K8 247 aa20.32■□□□□ 0.84
CLN3-259ENST00000637551 PHLPP2Q6ZVD8 1323 aa20.31■□□□□ 0.84
CLN3-259ENST00000637551 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.31■□□□□ 0.84
CLN3-259ENST00000637551 ARHGEF35A5YM69 484 aa20.31■□□□□ 0.84
CLN3-259ENST00000637551 PPP6R2O75170 966 aa20.31■□□□□ 0.84
CLN3-259ENST00000637551 CYP11B2P19099 503 aa20.31■□□□□ 0.84
CLN3-259ENST00000637551 ARL2P36404 184 aa20.31■□□□□ 0.84
CLN3-259ENST00000637551 PLA2G5P39877 138 aa20.31■□□□□ 0.84
CLN3-259ENST00000637551 UBA7P41226 1012 aa20.31■□□□□ 0.84
CLN3-259ENST00000637551 HTRA4P83105 476 aaPredicted RBP20.31■□□□□ 0.84
CLN3-259ENST00000637551 FAM228AQ86W67 206 aa20.31■□□□□ 0.84
CLN3-259ENST00000637551 ZNF579Q8NAF0 562 aaKnown RBP20.31■□□□□ 0.84
CLN3-259ENST00000637551 KIFAP3Q92845 792 aa20.31■□□□□ 0.84
CLN3-259ENST00000637551 TIFAQ96CG3 184 aa20.31■□□□□ 0.84
CLN3-259ENST00000637551 SCLT1Q96NL6 688 aa20.31■□□□□ 0.84
CLN3-259ENST00000637551 ELAC1Q9H777 363 aaKnown RBP20.31■□□□□ 0.84
CLN3-259ENST00000637551 C17orf75Q9HAS0 396 aa20.31■□□□□ 0.84
CLN3-259ENST00000637551 DDX19AQ9NUU7 478 aaKnown RBP20.31■□□□□ 0.84
CLN3-259ENST00000637551 DACT1Q9NYF0 836 aa20.31■□□□□ 0.84
CLN3-259ENST00000637551 ST3GAL5Q9UNP4 418 aa20.31■□□□□ 0.84
CLN3-259ENST00000637551 KIAA1024Q9UPX6 916 aa20.31■□□□□ 0.84
CLN3-259ENST00000637551 NOC2LQ9Y3T9 749 aaKnown RBP20.31■□□□□ 0.84
CLN3-259ENST00000637551 ZBTB39O15060 712 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 SCP2P22307 547 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 PHKA2P46019 1235 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 LAMTOR4Q0VGL1 99 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 DRP2Q13474 957 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 PPP2R5AQ15172 486 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 TCTN1Q2MV58 587 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 TMEM119Q4V9L6 283 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 PADI6Q6TGC4 694 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 RHPN2Q8IUC4 686 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 CRIPAKQ8N1N5 446 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 SP7Q8TDD2 431 aaPredicted RBP20.3■□□□□ 0.84
CLN3-259ENST00000637551 PRPF31Q8WWY3 499 aaKnown RBP20.3■□□□□ 0.84
CLN3-259ENST00000637551 CALML4Q96GE6 196 aa20.3■□□□□ 0.84
CLN3-259ENST00000637551 CDK5RAP3Q96JB5 506 aa20.3■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms