RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 TCERG1LQ5VWI1 586 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 HS2ST1Q7LGA3 356 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 FRMD5Q7Z6J6 570 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 TAX1BP1Q86VP1 789 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 ZNF513Q8N8E2 541 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-214ENST00000637038 DDX1Q92499 740 aaKnown RBP4.33□□□□□ -1.72
SCN1A-214ENST00000637038 ATP6V1G3Q96LB4 118 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 CCDC17Q96LX7 622 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 KRT12Q99456 494 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 PLVAPQ9BX97 442 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 SEMA6BQ9H3T3 888 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 ARHGAP20Q9P2F6 1191 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 MTRF1LQ9UGC7 380 aaKnown RBP4.33□□□□□ -1.72
SCN1A-214ENST00000637038 CNOT7Q9UIV1 285 aaKnown RBP4.33□□□□□ -1.72
SCN1A-214ENST00000637038 GGA2Q9UJY4 613 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 AMFRQ9UKV5 643 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 INTUQ9ULD6 942 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 RBAK-RBAKDNI3L0D1 243 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 TRIM66O15016 1216 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 SLC16A3O15427 465 aaKnown RBP4.33□□□□□ -1.72
SCN1A-214ENST00000637038 UFL1O94874 794 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 TTLL1O95922 423 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 GRK4P32298 578 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 CTNNA1P35221 906 aaKnown RBP4.33□□□□□ -1.72
SCN1A-214ENST00000637038 STAT1P42224 750 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 SLC1A4P43007 532 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 ATP2B2Q01814 1243 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 ARID5AQ03989 594 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 EHHADHQ08426 723 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 GRB10Q13322 594 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 MYBPC2Q14324 1141 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 NFIXQ14938 502 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 PLCB4Q15147 1175 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 CDC37Q16543 378 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-214ENST00000637038 EXOC3L4Q17RC7 722 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 TMEM119Q4V9L6 283 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 ARRDC4Q8NCT1 418 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 GIMAP7Q8NHV1 300 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 CTNNBL1Q8WYA6 563 aaPredicted RBP4.33□□□□□ -1.72
SCN1A-214ENST00000637038 CABS1Q96KC9 395 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 PSMB7Q99436 277 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 SH3GL2Q99962 352 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 ZC3H12CQ9C0D7 883 aaKnown RBP4.33□□□□□ -1.72
SCN1A-214ENST00000637038 EPN3Q9H201 632 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 PSTPIP2Q9H939 334 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 SUGT1Q9Y2Z0 365 aa4.33□□□□□ -1.72
SCN1A-214ENST00000637038 SPDYE3A6NKU9 549 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 KRIT1O00522 736 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 MPHOSPH10O00566 681 aaKnown RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 TLR3O15455 904 aaKnown RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 FAM13AO94988 1023 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 PLA2G4BP0C869 781 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 LIG3P49916 1009 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 USP11P51784 963 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 GFPT1Q06210 699 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 IKQ13123 557 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 MTA1Q13330 715 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 ITPK1Q13572 414 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 ENOX2Q16206 610 aaKnown RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 AGBL2Q5U5Z8 902 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 C15orf52Q6ZUT6 534 aaKnown RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 KLHL7Q8IXQ5 586 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 SP8Q8IXZ3 490 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 GSPT2Q8IYD1 628 aaKnown RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 KIAA0895Q8NCT3 520 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 CCDC114Q96M63 670 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 CSRNP1Q96S65 589 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 C11orf49Q9H6J7 331 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 GPCPD1Q9NPB8 672 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 GDF3Q9NR23 364 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 IL17RBQ9NRM6 502 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 EMILIN3Q9NT22 766 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 NFU1Q9UMS0 254 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 CAPN6Q9Y6Q1 641 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 ADGRA2Q96PE1 1338 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 SART1O43290 800 aaKnown RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 PPP1R37O75864 691 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 KRT13P13646 458 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 NR2F2P24468 414 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 ATP5DP30049 168 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 GUCY2FP51841 1108 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 SLC7A5Q01650 507 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 USP17L2Q6R6M4 530 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 MOXD1Q6UVY6 613 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 ARMCX6Q7L4S7 300 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 FASTKD5Q7L8L6 764 aaKnown RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 NELFCDQ8IXH7 590 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 ANKRD13CQ8N6S4 541 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 UBL4BQ8N7F7 174 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 BANK1Q8NDB2 785 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 SMCR8Q8TEV9 937 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 UBLCP1Q8WVY7 318 aaPredicted RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 UBA5Q9GZZ9 404 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 ISCUQ9H1K1 167 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 RIOX1Q9H6W3 641 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 RBM12Q9NTZ6 932 aaKnown RBP4.32□□□□□ -1.72
SCN1A-214ENST00000637038 CAPN7Q9Y6W3 813 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 PHIPQ8WWQ0 1821 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 GPR75-ASB3A0A0A6YYF3 556 aa4.32□□□□□ -1.72
SCN1A-214ENST00000637038 A0A0A6YYK5 440 aaPredicted RBP4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms